Wall clock time and date at job start Sat Apr 11 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48508 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47208 * 300.00068 * 3 2 1 6 6 H 1.48501 * 109.47154 * 60.00182 * 3 2 1 7 7 C 1.38813 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99883 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00277 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00454 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.47077 * 294.99877 * 11 10 9 13 13 N 1.46503 * 109.47080 * 55.00281 * 11 10 9 14 14 C 1.34777 * 119.99790 * 204.99842 * 13 11 10 15 15 O 1.21701 * 120.00083 * 359.97438 * 14 13 11 16 16 C 1.46653 * 119.99868 * 179.97438 * 14 13 11 17 17 C 1.37830 * 126.82259 * 180.02562 * 16 14 13 18 18 N 1.32965 * 107.99057 * 179.97438 * 17 16 14 19 19 C 1.31794 * 109.77864 * 0.02562 * 18 17 16 20 20 C 1.47816 * 125.50956 * 180.02562 * 19 18 17 21 21 C 1.39583 * 120.14438 * 179.69867 * 20 19 18 22 22 C 1.37965 * 119.84920 * 179.74014 * 21 20 19 23 23 C 1.38365 * 120.14365 * 0.51747 * 22 21 20 24 24 C 1.38350 * 120.29615 * 359.76148 * 23 22 21 25 25 C 1.37959 * 120.14608 * 359.97438 * 24 23 22 26 26 N 1.35908 * 108.98094 * 359.97438 * 19 18 17 27 27 H 0.96998 * 126.54847 * 180.26134 * 26 19 18 28 28 C 1.53006 * 109.46702 * 174.99879 * 11 10 9 29 29 C 1.52999 * 117.49794 * 248.74767 * 28 11 10 30 30 C 1.53005 * 117.49527 * 180.08992 * 28 11 10 31 31 H 0.97004 * 120.00122 * 359.97438 * 1 2 3 32 32 H 0.97008 * 119.99699 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.46846 * 59.99073 * 10 9 7 34 34 H 1.09000 * 109.46697 * 299.99954 * 10 9 7 35 35 H 0.97004 * 119.99822 * 24.99414 * 13 11 10 36 36 H 1.08004 * 126.00450 * 359.95495 * 17 16 14 37 37 H 1.07999 * 120.07479 * 359.97438 * 21 20 19 38 38 H 1.08000 * 119.92634 * 180.25408 * 22 21 20 39 39 H 1.08001 * 119.84799 * 179.74113 * 23 22 21 40 40 H 1.08006 * 119.92754 * 180.02562 * 24 23 22 41 41 H 1.08008 * 120.07308 * 180.02562 * 25 24 23 42 42 H 1.08998 * 115.54970 * 34.42159 * 28 11 10 43 43 H 1.09007 * 117.49622 * 0.02562 * 29 28 11 44 44 H 1.08994 * 117.49866 * 145.02205 * 29 28 11 45 45 H 1.08996 * 117.49355 * 214.97923 * 30 28 11 46 46 H 1.08995 * 117.49923 * 359.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.0637 -4.8197 -0.0031 12 1 0.4979 -4.8142 0.9284 13 7 0.1438 -4.6753 -1.1342 14 6 -1.0806 -5.2362 -1.0827 15 8 -1.4219 -5.8629 -0.0970 16 6 -2.0017 -5.0911 -2.2147 17 6 -3.2780 -5.6022 -2.3118 18 7 -3.7739 -5.2467 -3.4932 19 6 -2.8828 -4.5367 -4.1556 20 6 -3.0719 -3.9650 -5.5055 21 6 -2.0510 -3.2229 -6.1018 22 6 -2.2321 -2.6966 -7.3642 23 6 -3.4263 -2.8940 -8.0346 24 6 -4.4443 -3.6236 -7.4469 25 6 -4.2742 -4.1599 -6.1873 26 7 -1.7622 -4.4144 -3.3964 27 1 -0.9510 -3.9396 -3.6361 28 6 1.8246 -6.1411 -0.1301 29 6 1.6660 -6.9251 -1.4343 30 6 1.0017 -7.4308 -0.1514 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0016 33 1 2.6848 -3.7153 0.8872 34 1 2.6846 -3.7137 -0.8928 35 1 0.4160 -4.1759 -1.9200 36 1 -3.7860 -6.1886 -1.5605 37 1 -1.1201 -3.0644 -5.5777 38 1 -1.4415 -2.1257 -7.8284 39 1 -3.5644 -2.4762 -9.0209 40 1 -5.3739 -3.7743 -7.9757 41 1 -5.0696 -4.7297 -5.7297 42 1 2.7971 -6.1726 0.3611 43 1 1.0200 -6.4992 -2.2022 44 1 2.5341 -7.4727 -1.8011 45 1 1.4331 -8.3109 0.3254 46 1 -0.0816 -7.3380 -0.0745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733186811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:36 Heat of formation + Delta-G solvation = 68.246058 kcal Electronic energy + Delta-G solvation = -28833.762236 eV Core-core repulsion = 24917.527924 eV Total energy + Delta-G solvation = -3916.234311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.23998 -41.11773 -39.79871 -38.36027 -36.59140 -35.07402 -33.97311 -33.28314 -32.85269 -31.82367 -30.31493 -29.30818 -26.08885 -25.13647 -23.98740 -23.52706 -23.23167 -22.92673 -22.11678 -21.27449 -20.98161 -20.07292 -19.18069 -18.01371 -17.40368 -17.25169 -16.96860 -16.58241 -16.36930 -16.23874 -15.74546 -15.48930 -15.22492 -15.15679 -15.01289 -14.83318 -14.43734 -14.42253 -14.30698 -13.76022 -13.64045 -13.17006 -12.91621 -12.78916 -12.71145 -12.36774 -12.33721 -12.06988 -12.06588 -11.86577 -11.64893 -11.39772 -11.34330 -11.07939 -11.00554 -10.83697 -10.60191 -10.12204 -9.92878 -9.08551 -9.04856 -7.97206 -5.27161 -0.37567 0.43707 0.53046 1.46140 1.47842 1.57120 1.59901 1.78675 2.00507 2.20432 2.53240 2.90640 2.92025 3.06375 3.37898 3.55832 3.64989 3.81880 3.94286 3.97998 4.05935 4.08618 4.15077 4.20523 4.28707 4.37118 4.45141 4.46921 4.52567 4.58294 4.66074 4.79793 4.83902 4.89258 5.04053 5.08897 5.10346 5.21881 5.29422 5.37357 5.43861 5.46601 5.49553 5.50422 5.56225 5.96107 6.04603 6.22727 6.34085 6.69799 7.01458 7.30772 8.03064 8.26833 9.25605 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007367 B = 0.003770 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3799.779504 B = 7425.459856 C =10113.614224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.299 1.299 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.179 3.821 12 H 0.067 0.933 13 N -0.699 5.699 14 C 0.598 3.402 15 O -0.552 6.552 16 C -0.088 4.088 17 C 0.063 3.937 18 N -0.499 5.499 19 C 0.278 3.722 20 C -0.047 4.047 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.103 4.103 24 C -0.121 4.121 25 C -0.086 4.086 26 N -0.535 5.535 27 H 0.432 0.568 28 C -0.164 4.164 29 C -0.163 4.163 30 C -0.189 4.189 31 H 0.249 0.751 32 H 0.373 0.627 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.403 0.597 36 H 0.195 0.805 37 H 0.128 0.872 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.082 0.918 44 H 0.110 0.890 45 H 0.104 0.896 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 -11.659 -16.558 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.264 4.264 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.227 1.227 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.074 3.926 12 H 0.085 0.915 13 N -0.349 5.349 14 C 0.385 3.615 15 O -0.431 6.431 16 C -0.205 4.205 17 C -0.093 4.093 18 N -0.218 5.218 19 C 0.018 3.982 20 C -0.049 4.049 21 C -0.134 4.134 22 C -0.139 4.139 23 C -0.121 4.121 24 C -0.138 4.138 25 C -0.106 4.106 26 N -0.139 5.139 27 H 0.274 0.726 28 C -0.183 4.183 29 C -0.200 4.200 30 C -0.226 4.226 31 H 0.058 0.942 32 H 0.205 0.795 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.238 0.762 36 H 0.212 0.788 37 H 0.146 0.854 38 H 0.168 0.832 39 H 0.173 0.827 40 H 0.172 0.828 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.100 0.900 44 H 0.129 0.871 45 H 0.123 0.877 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.097 -12.225 -16.053 20.414 hybrid contribution 1.162 1.740 0.493 2.150 sum -1.934 -10.485 -15.560 18.863 Atomic orbital electron populations 1.69837 1.06673 1.25864 1.59497 1.25514 0.96208 1.00972 1.03656 0.85118 0.78415 0.80011 0.76454 1.18781 1.22074 1.22653 1.19653 0.91606 0.84978 1.41065 0.90174 1.42534 1.05584 1.00947 1.89566 1.21054 0.93280 0.83625 0.99726 1.20588 0.89484 0.93720 0.88801 0.91463 1.45775 1.14204 1.54095 1.20840 1.16852 0.80837 0.78786 0.84996 1.90762 1.76396 1.43116 1.32785 1.21383 0.99966 1.09315 0.89862 1.23109 0.90705 1.00208 0.95240 1.70258 1.29507 1.15826 1.06235 1.21780 0.83105 0.99123 0.94162 1.17785 0.97175 1.01316 0.88662 1.21341 0.98101 0.97234 0.96723 1.21387 0.99023 0.99599 0.93897 1.21736 0.92626 0.96766 1.01007 1.21466 1.00661 0.97351 0.94365 1.21354 0.95705 0.98500 0.95057 1.43321 1.16390 1.40822 1.13413 0.72620 1.22624 1.01224 0.90898 1.03571 1.22930 1.03236 1.03096 0.90786 1.23295 1.00339 0.97214 1.01717 0.94214 0.79498 0.94089 0.93969 0.76172 0.78789 0.85434 0.83200 0.82680 0.82813 0.84953 0.85324 0.89975 0.87122 0.87739 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.99 13.06 21.65 0.28 -57.71 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.97 44.68 29.55 68.60 2.03 46.70 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 7 C -0.24 -12.73 9.99 84.03 0.84 -11.89 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -35.34 5.43 -343.45 -1.87 -37.20 16 10 C 0.15 5.42 5.80 86.38 0.50 5.92 16 11 C 0.18 5.74 2.59 44.99 0.12 5.86 16 12 H 0.07 2.55 7.58 -2.39 -0.02 2.54 16 13 N -0.70 -21.52 3.05 -446.51 -1.36 -22.88 16 14 C 0.60 19.90 6.62 86.44 0.57 20.47 16 15 O -0.55 -21.06 13.93 -4.35 -0.06 -21.12 16 16 C -0.09 -2.69 7.11 40.23 0.29 -2.41 16 17 C 0.06 1.93 11.69 84.42 0.99 2.92 16 18 N -0.50 -15.13 10.79 -187.96 -2.03 -17.16 16 19 C 0.28 7.65 7.74 136.59 1.06 8.71 16 20 C -0.05 -1.09 5.87 -20.09 -0.12 -1.21 16 21 C -0.11 -2.19 9.69 22.53 0.22 -1.98 16 22 C -0.12 -1.82 10.03 22.24 0.22 -1.60 16 23 C -0.10 -1.33 10.04 22.33 0.22 -1.11 16 24 C -0.12 -1.77 10.03 22.23 0.22 -1.55 16 25 C -0.09 -1.76 9.69 22.53 0.22 -1.54 16 26 N -0.53 -14.00 5.99 -176.48 -1.06 -15.05 16 27 H 0.43 9.38 7.40 -92.71 -0.69 8.70 16 28 C -0.16 -4.21 5.71 -10.79 -0.06 -4.27 16 29 C -0.16 -3.75 9.74 30.62 0.30 -3.45 16 30 C -0.19 -4.88 9.82 30.62 0.30 -4.58 16 31 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.37 19.49 7.33 -92.70 -0.68 18.81 16 33 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.40 11.51 7.84 -92.71 -0.73 10.78 16 36 H 0.20 5.34 8.06 -2.91 -0.02 5.32 16 37 H 0.13 2.15 7.14 -2.91 -0.02 2.13 16 38 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 39 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 40 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.13 2.75 7.82 -2.91 -0.02 2.73 16 42 H 0.13 2.88 8.11 -2.39 -0.02 2.86 16 43 H 0.08 1.99 6.67 -2.38 -0.02 1.97 16 44 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.10 2.29 8.14 -2.39 -0.02 2.28 16 46 H 0.09 2.94 5.01 -2.39 -0.01 2.93 16 Total: -1.00 -69.77 386.66 1.24 -68.53 By element: Atomic # 1 Polarization: 52.11 SS G_CDS: -1.05 Total: 51.06 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 6.35 Total: 4.83 kcal Atomic # 7 Polarization: -143.97 SS G_CDS: -6.03 Total: -150.00 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.06 Total: -21.12 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -69.77 1.24 -68.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733186811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.771 kcal (2) G-P(sol) polarization free energy of solvation -69.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds