Wall clock time and date at job start Sat Apr 11 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00154 * 2 1 4 4 H 1.48502 * 109.47085 * 174.99774 * 3 2 1 5 5 H 1.48503 * 109.46925 * 294.99690 * 3 2 1 6 6 H 1.48496 * 109.47210 * 54.99529 * 3 2 1 7 7 C 1.38814 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00683 * 185.08268 * 7 2 1 9 9 N 1.36942 * 119.99923 * 5.09045 * 7 2 1 10 10 C 1.46500 * 119.99950 * 174.87939 * 9 7 2 11 11 C 1.53000 * 112.84896 * 54.36793 * 10 9 7 12 12 N 1.46501 * 109.46794 * 67.78554 * 11 10 9 13 13 C 1.34787 * 119.99722 * 184.80872 * 12 11 10 14 14 O 1.21622 * 119.99669 * 5.00875 * 13 12 11 15 15 C 1.47288 * 119.99933 * 185.01061 * 13 12 11 16 16 C 1.37959 * 126.80821 * 353.36632 * 15 13 12 17 17 N 1.34163 * 107.88878 * 179.83606 * 16 15 13 18 18 H 0.96994 * 125.16346 * 180.16796 * 17 16 15 19 19 N 1.39779 * 109.66808 * 0.44219 * 17 16 15 20 20 C 1.31363 * 109.08284 * 359.72664 * 19 17 16 21 21 C 1.48291 * 126.51425 * 179.97438 * 20 19 17 22 22 C 1.39379 * 120.12351 * 144.76044 * 21 20 19 23 23 C 1.38010 * 119.87112 * 179.74605 * 22 21 20 24 24 C 1.38332 * 120.12176 * 0.55578 * 23 22 21 25 25 C 1.38322 * 120.25460 * 359.69813 * 24 23 22 26 26 C 1.38006 * 120.12583 * 0.02562 * 25 24 23 27 27 C 1.53777 * 113.61417 * 283.05971 * 10 9 7 28 28 C 1.53784 * 87.08104 * 270.88395 * 27 10 9 29 29 C 1.53775 * 87.08311 * 334.57070 * 28 27 10 30 30 H 0.97001 * 119.99634 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99561 * 355.15465 * 9 7 2 32 32 H 1.08998 * 109.46799 * 187.77961 * 11 10 9 33 33 H 1.08997 * 109.46973 * 307.78614 * 11 10 9 34 34 H 0.96998 * 120.00584 * 4.81267 * 12 11 10 35 35 H 1.07999 * 126.05908 * 0.02562 * 16 15 13 36 36 H 1.08000 * 120.06732 * 0.02847 * 22 21 20 37 37 H 1.08001 * 119.93802 * 180.30411 * 23 22 21 38 38 H 1.07997 * 119.87051 * 179.72061 * 24 23 22 39 39 H 1.07997 * 119.93968 * 180.02562 * 25 24 23 40 40 H 1.07996 * 120.06291 * 180.02562 * 26 25 24 41 41 H 1.08997 * 113.61676 * 25.43264 * 27 10 9 42 42 H 1.08998 * 113.61538 * 156.34037 * 27 10 9 43 43 H 1.08998 * 113.61382 * 220.01648 * 28 27 10 44 44 H 1.09002 * 113.61270 * 89.11925 * 28 27 10 45 45 H 1.08997 * 113.61285 * 270.88588 * 29 28 27 46 46 H 1.09000 * 113.61707 * 139.97781 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7056 1.3490 0.1221 5 1 1.9853 2.3422 -1.2690 6 1 1.8022 2.4480 1.1468 7 6 2.0103 -1.2022 0.0005 8 1 3.0871 -1.2041 0.0834 9 7 1.3296 -2.3858 -0.1042 10 6 2.0665 -3.6470 -0.2166 11 6 3.0759 -3.8483 0.9154 12 7 2.3604 -4.0403 2.1793 13 6 3.0478 -4.1404 3.3343 14 8 4.2535 -3.9807 3.3402 15 6 2.3388 -4.4433 4.5893 16 6 0.9733 -4.5246 4.7684 17 7 0.7436 -4.8241 6.0558 18 1 -0.1328 -4.9431 6.4539 19 7 1.9590 -4.9325 6.7377 20 6 2.9442 -4.7118 5.8973 21 6 4.3932 -4.7300 6.2118 22 6 5.3072 -5.2025 5.2716 23 6 6.6551 -5.2123 5.5679 24 6 7.0984 -4.7651 6.7996 25 6 6.1954 -4.3000 7.7385 26 6 4.8457 -4.2803 7.4510 27 6 2.6506 -3.8964 -1.6171 28 6 1.3187 -4.5819 -1.9646 29 6 1.1640 -4.8679 -0.4616 30 1 -0.4850 0.8401 -0.0004 31 1 0.3597 -2.3887 -0.1079 32 1 3.6859 -4.7270 0.7061 33 1 3.7172 -2.9702 0.9906 34 1 1.3920 -4.0954 2.1849 35 1 0.2224 -4.3768 4.0065 36 1 4.9618 -5.5561 4.3114 37 1 7.3647 -5.5736 4.8383 38 1 8.1537 -4.7788 7.0288 39 1 6.5471 -3.9516 8.6983 40 1 4.1416 -3.9166 8.1847 41 1 2.8324 -2.9830 -2.1834 42 1 3.5042 -4.5742 -1.6198 43 1 1.4351 -5.4806 -2.5704 44 1 0.5660 -3.8991 -2.3589 45 1 1.6112 -5.8112 -0.1484 46 1 0.1456 -4.7387 -0.0951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754989578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:01 Heat of formation + Delta-G solvation = 98.292747 kcal Electronic energy + Delta-G solvation = -29168.238585 eV Core-core repulsion = 25253.307196 eV Total energy + Delta-G solvation = -3914.931389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.18389 -39.29127 -38.77247 -38.10424 -33.93405 -33.28896 -32.78970 -30.92809 -30.53432 -29.92150 -29.68769 -27.01992 -25.26408 -24.01299 -23.48050 -23.07186 -22.31437 -21.50640 -20.13062 -19.55877 -18.68143 -18.03514 -17.15310 -16.72375 -16.28339 -15.50644 -15.36576 -15.20264 -14.93831 -14.57424 -14.38159 -14.22757 -13.89928 -13.72489 -13.49474 -13.27009 -13.16781 -12.91141 -12.62765 -12.46313 -12.04239 -11.77608 -11.37003 -11.30860 -11.18839 -11.02431 -10.87280 -10.80752 -10.40997 -10.18500 -10.09667 -10.07219 -9.68858 -9.56562 -9.44819 -8.92776 -8.89302 -8.74930 -8.41715 -8.28103 -7.05731 -5.84682 -3.13177 1.04948 1.53301 1.57546 2.35975 2.59304 3.41238 3.48964 3.50643 3.66338 3.73426 3.97548 4.31148 4.53904 4.57284 4.98975 5.05153 5.12026 5.15735 5.20878 5.25906 5.29764 5.35493 5.41819 5.49411 5.54336 5.59231 5.72772 5.75337 5.94446 6.05066 6.10407 6.16572 6.17823 6.21841 6.29307 6.37470 6.53788 6.56176 6.63122 6.68128 6.73036 6.90255 6.97138 6.99687 7.06422 7.09880 7.40905 7.71671 8.04890 8.34164 8.72621 9.46488 9.99247 10.34264 11.37526 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.003273 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.754884 B = 8553.108688 C = 8968.784256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.233 4.233 8 H 0.073 0.927 9 N -0.699 5.699 10 C 0.176 3.824 11 C 0.125 3.875 12 N -0.702 5.702 13 C 0.586 3.414 14 O -0.543 6.543 15 C -0.272 4.272 16 C 0.109 3.891 17 N -0.466 5.466 18 H 0.443 0.557 19 N -0.288 5.288 20 C 0.171 3.829 21 C -0.026 4.026 22 C -0.047 4.047 23 C -0.130 4.130 24 C -0.109 4.109 25 C -0.137 4.137 26 C -0.089 4.089 27 C -0.156 4.156 28 C -0.130 4.130 29 C -0.146 4.146 30 H 0.254 0.746 31 H 0.386 0.614 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.396 0.604 35 H 0.190 0.810 36 H 0.139 0.861 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.562 -14.432 9.998 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.364 4.364 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.082 3.918 11 C 0.000 4.000 12 N -0.351 5.351 13 C 0.373 3.627 14 O -0.422 6.422 15 C -0.288 4.288 16 C -0.041 4.041 17 N -0.172 5.172 18 H 0.287 0.713 19 N -0.109 5.109 20 C 0.002 3.998 21 C -0.028 4.028 22 C -0.066 4.066 23 C -0.148 4.148 24 C -0.127 4.127 25 C -0.155 4.155 26 C -0.108 4.108 27 C -0.197 4.197 28 C -0.167 4.167 29 C -0.184 4.184 30 H 0.064 0.936 31 H 0.221 0.779 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.229 0.771 35 H 0.206 0.794 36 H 0.157 0.843 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.179 -14.437 11.174 18.728 hybrid contribution -0.869 1.368 -0.735 1.779 sum 3.310 -13.070 10.439 17.051 Atomic orbital electron populations 1.69666 1.05078 1.25603 1.57619 1.24693 0.95435 0.97584 1.02690 0.86195 0.79162 0.84254 0.77120 1.20405 1.21841 1.21986 1.19170 0.91556 0.83688 1.42004 0.90953 1.42086 1.05253 0.99583 1.87004 1.20797 0.91882 0.87455 0.91640 1.21732 0.95175 1.00529 0.82581 1.45570 1.10207 1.72923 1.06379 1.17101 0.86669 0.76867 0.82086 1.90743 1.13924 1.51349 1.86204 1.21428 0.91748 1.20165 0.95410 1.23102 0.97295 0.95761 0.87973 1.45909 1.08516 1.55842 1.06911 0.71294 1.77294 0.89123 1.25206 1.19234 1.21828 0.92725 0.95724 0.89499 1.17649 0.87540 1.02671 0.94961 1.21461 0.92325 0.94842 0.97987 1.21067 0.95582 1.01301 0.96842 1.21224 0.99410 0.98170 0.93934 1.20957 0.92936 1.01819 0.99743 1.21145 0.95867 0.98420 0.95405 1.23441 0.96025 1.00497 0.99691 1.22638 0.98886 0.99605 0.95613 1.23191 0.99994 0.97982 0.97221 0.93603 0.77946 0.92784 0.90862 0.77068 0.79359 0.84322 0.85890 0.86277 0.86094 0.86015 0.90835 0.91414 0.92759 0.90147 0.90378 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.63 13.07 55.49 0.73 -25.91 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 22.19 29.56 -169.99 -5.02 17.17 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.23 -6.05 9.42 -15.06 -0.14 -6.19 16 8 H 0.07 1.91 6.92 -52.49 -0.36 1.54 16 9 N -0.70 -15.55 5.24 -46.48 -0.24 -15.79 16 10 C 0.18 3.08 0.85 -131.01 -0.11 2.97 16 11 C 0.13 2.19 4.98 -4.04 -0.02 2.17 16 12 N -0.70 -11.27 5.43 -61.43 -0.33 -11.60 16 13 C 0.59 10.02 7.53 -12.58 -0.09 9.92 16 14 O -0.54 -10.67 12.77 5.26 0.07 -10.60 16 15 C -0.27 -4.06 6.26 -102.95 -0.64 -4.70 16 16 C 0.11 1.21 11.50 -16.64 -0.19 1.02 16 17 N -0.47 -4.81 7.20 30.81 0.22 -4.59 16 18 H 0.44 2.81 8.96 -182.85 -1.64 1.17 16 19 N -0.29 -3.95 12.63 34.57 0.44 -3.52 16 20 C 0.17 2.61 6.94 -80.56 -0.56 2.05 16 21 C -0.03 -0.39 5.70 -104.91 -0.60 -0.99 16 22 C -0.05 -0.70 7.75 -39.24 -0.30 -1.00 16 23 C -0.13 -1.66 10.03 -39.63 -0.40 -2.06 16 24 C -0.11 -1.24 10.04 -39.52 -0.40 -1.64 16 25 C -0.14 -1.58 10.03 -39.64 -0.40 -1.98 16 26 C -0.09 -1.19 9.76 -39.24 -0.38 -1.57 16 27 C -0.16 -2.58 7.39 -25.92 -0.19 -2.77 16 28 C -0.13 -1.93 7.99 -25.92 -0.21 -2.14 16 29 C -0.15 -2.08 6.95 -25.92 -0.18 -2.26 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.39 9.15 7.83 -40.82 -0.32 8.83 16 32 H 0.05 0.87 8.02 -51.93 -0.42 0.45 16 33 H 0.07 1.53 6.92 -51.93 -0.36 1.17 16 34 H 0.40 5.67 7.21 -40.82 -0.29 5.37 16 35 H 0.19 1.47 7.50 -52.49 -0.39 1.07 16 36 H 0.14 2.19 5.88 -52.49 -0.31 1.88 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.07 0.99 8.02 -51.93 -0.42 0.57 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 46 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -32.63 384.29 -10.72 -43.35 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -7.45 Total: 15.19 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -4.91 Total: -9.49 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.81 Total: -61.40 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.07 Total: -10.60 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.63 -10.72 -43.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754989578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.639 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds