Wall clock time and date at job start Sat Apr 11 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00154 * 2 1 4 4 H 1.48502 * 109.47085 * 174.99774 * 3 2 1 5 5 H 1.48503 * 109.46925 * 294.99690 * 3 2 1 6 6 H 1.48496 * 109.47210 * 54.99529 * 3 2 1 7 7 C 1.38814 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00683 * 185.08268 * 7 2 1 9 9 N 1.36942 * 119.99923 * 5.09045 * 7 2 1 10 10 C 1.46500 * 119.99950 * 174.87939 * 9 7 2 11 11 C 1.53000 * 112.84896 * 54.36793 * 10 9 7 12 12 N 1.46501 * 109.46794 * 67.78554 * 11 10 9 13 13 C 1.34787 * 119.99722 * 184.80872 * 12 11 10 14 14 O 1.21622 * 119.99669 * 5.00875 * 13 12 11 15 15 C 1.47288 * 119.99933 * 185.01061 * 13 12 11 16 16 C 1.37959 * 126.80821 * 353.36632 * 15 13 12 17 17 N 1.34163 * 107.88878 * 179.83606 * 16 15 13 18 18 H 0.96994 * 125.16346 * 180.16796 * 17 16 15 19 19 N 1.39779 * 109.66808 * 0.44219 * 17 16 15 20 20 C 1.31363 * 109.08284 * 359.72664 * 19 17 16 21 21 C 1.48291 * 126.51425 * 179.97438 * 20 19 17 22 22 C 1.39379 * 120.12351 * 144.76044 * 21 20 19 23 23 C 1.38010 * 119.87112 * 179.74605 * 22 21 20 24 24 C 1.38332 * 120.12176 * 0.55578 * 23 22 21 25 25 C 1.38322 * 120.25460 * 359.69813 * 24 23 22 26 26 C 1.38006 * 120.12583 * 0.02562 * 25 24 23 27 27 C 1.53777 * 113.61417 * 283.05971 * 10 9 7 28 28 C 1.53784 * 87.08104 * 270.88395 * 27 10 9 29 29 C 1.53775 * 87.08311 * 334.57070 * 28 27 10 30 30 H 0.97001 * 119.99634 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99561 * 355.15465 * 9 7 2 32 32 H 1.08998 * 109.46799 * 187.77961 * 11 10 9 33 33 H 1.08997 * 109.46973 * 307.78614 * 11 10 9 34 34 H 0.96998 * 120.00584 * 4.81267 * 12 11 10 35 35 H 1.07999 * 126.05908 * 0.02562 * 16 15 13 36 36 H 1.08000 * 120.06732 * 0.02847 * 22 21 20 37 37 H 1.08001 * 119.93802 * 180.30411 * 23 22 21 38 38 H 1.07997 * 119.87051 * 179.72061 * 24 23 22 39 39 H 1.07997 * 119.93968 * 180.02562 * 25 24 23 40 40 H 1.07996 * 120.06291 * 180.02562 * 26 25 24 41 41 H 1.08997 * 113.61676 * 25.43264 * 27 10 9 42 42 H 1.08998 * 113.61538 * 156.34037 * 27 10 9 43 43 H 1.08998 * 113.61382 * 220.01648 * 28 27 10 44 44 H 1.09002 * 113.61270 * 89.11925 * 28 27 10 45 45 H 1.08997 * 113.61285 * 270.88588 * 29 28 27 46 46 H 1.09000 * 113.61707 * 139.97781 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7056 1.3490 0.1221 5 1 1.9853 2.3422 -1.2690 6 1 1.8022 2.4480 1.1468 7 6 2.0103 -1.2022 0.0005 8 1 3.0871 -1.2041 0.0834 9 7 1.3296 -2.3858 -0.1042 10 6 2.0665 -3.6470 -0.2166 11 6 3.0759 -3.8483 0.9154 12 7 2.3604 -4.0403 2.1793 13 6 3.0478 -4.1404 3.3343 14 8 4.2535 -3.9807 3.3402 15 6 2.3388 -4.4433 4.5893 16 6 0.9733 -4.5246 4.7684 17 7 0.7436 -4.8241 6.0558 18 1 -0.1328 -4.9431 6.4539 19 7 1.9590 -4.9325 6.7377 20 6 2.9442 -4.7118 5.8973 21 6 4.3932 -4.7300 6.2118 22 6 5.3072 -5.2025 5.2716 23 6 6.6551 -5.2123 5.5679 24 6 7.0984 -4.7651 6.7996 25 6 6.1954 -4.3000 7.7385 26 6 4.8457 -4.2803 7.4510 27 6 2.6506 -3.8964 -1.6171 28 6 1.3187 -4.5819 -1.9646 29 6 1.1640 -4.8679 -0.4616 30 1 -0.4850 0.8401 -0.0004 31 1 0.3597 -2.3887 -0.1079 32 1 3.6859 -4.7270 0.7061 33 1 3.7172 -2.9702 0.9906 34 1 1.3920 -4.0954 2.1849 35 1 0.2224 -4.3768 4.0065 36 1 4.9618 -5.5561 4.3114 37 1 7.3647 -5.5736 4.8383 38 1 8.1537 -4.7788 7.0288 39 1 6.5471 -3.9516 8.6983 40 1 4.1416 -3.9166 8.1847 41 1 2.8324 -2.9830 -2.1834 42 1 3.5042 -4.5742 -1.6198 43 1 1.4351 -5.4806 -2.5704 44 1 0.5660 -3.8991 -2.3589 45 1 1.6112 -5.8112 -0.1484 46 1 0.1456 -4.7387 -0.0951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754989578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:59 Heat of formation + Delta-G solvation = 76.744604 kcal Electronic energy + Delta-G solvation = -29169.172983 eV Core-core repulsion = 25253.307196 eV Total energy + Delta-G solvation = -3915.865787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.20150 -40.64388 -39.75601 -39.41688 -35.30283 -35.15411 -33.78598 -32.08237 -31.83902 -31.36690 -30.69205 -28.40266 -26.62776 -25.79530 -24.47720 -24.22966 -23.38809 -22.78128 -21.19221 -20.70721 -19.83757 -19.42145 -19.02996 -17.68063 -17.47361 -16.90715 -16.45764 -16.43482 -16.19908 -15.93337 -15.69521 -15.54939 -15.25267 -14.97317 -14.76262 -14.70481 -14.27564 -14.11490 -13.88587 -13.58404 -13.42939 -13.06952 -12.95327 -12.92235 -12.63454 -12.31818 -12.14004 -12.09921 -11.97339 -11.80566 -11.51232 -11.38572 -11.07591 -10.97783 -10.81902 -10.67892 -10.04352 -9.78122 -9.66600 -9.31063 -8.95121 -7.93907 -5.18104 0.03658 0.54210 0.58650 1.29197 1.42706 1.46212 1.53166 1.73813 2.40432 2.50221 2.55634 2.97623 3.31876 3.39149 3.63015 3.79804 3.86193 4.03270 4.06975 4.09631 4.17725 4.21421 4.27353 4.34928 4.35258 4.44066 4.61433 4.73991 4.76354 4.89505 4.93374 4.96931 4.98171 5.06896 5.17228 5.18881 5.21885 5.37369 5.48315 5.57441 5.59073 5.64315 5.69049 5.70957 5.77296 6.12118 6.21856 6.31613 6.42101 6.79964 7.38756 7.45014 8.12970 8.36728 9.28753 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.003273 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.754884 B = 8553.108688 C = 8968.784256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.063 4.063 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.299 1.299 7 C -0.216 4.216 8 H 0.063 0.937 9 N -0.703 5.703 10 C 0.161 3.839 11 C 0.135 3.865 12 N -0.696 5.696 13 C 0.582 3.418 14 O -0.577 6.577 15 C -0.311 4.311 16 C 0.137 3.863 17 N -0.446 5.446 18 H 0.462 0.538 19 N -0.302 5.302 20 C 0.155 3.845 21 C -0.051 4.051 22 C -0.067 4.067 23 C -0.139 4.139 24 C -0.107 4.107 25 C -0.134 4.134 26 C -0.102 4.102 27 C -0.156 4.156 28 C -0.123 4.123 29 C -0.125 4.125 30 H 0.248 0.752 31 H 0.379 0.621 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.405 0.595 35 H 0.227 0.773 36 H 0.121 0.879 37 H 0.138 0.862 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.126 0.874 41 H 0.042 0.958 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.107 0.893 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.475 -16.106 10.758 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.255 4.255 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.226 1.226 7 C -0.349 4.349 8 H 0.080 0.920 9 N -0.343 5.343 10 C 0.069 3.931 11 C 0.009 3.991 12 N -0.345 5.345 13 C 0.371 3.629 14 O -0.458 6.458 15 C -0.326 4.326 16 C -0.015 4.015 17 N -0.154 5.154 18 H 0.310 0.690 19 N -0.124 5.124 20 C -0.013 4.013 21 C -0.053 4.053 22 C -0.087 4.087 23 C -0.157 4.157 24 C -0.125 4.125 25 C -0.152 4.152 26 C -0.122 4.122 27 C -0.197 4.197 28 C -0.160 4.160 29 C -0.163 4.163 30 H 0.058 0.942 31 H 0.212 0.788 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.241 0.759 35 H 0.243 0.757 36 H 0.138 0.862 37 H 0.156 0.844 38 H 0.170 0.830 39 H 0.169 0.831 40 H 0.144 0.856 41 H 0.061 0.939 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.125 0.875 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.085 -16.156 11.951 20.507 hybrid contribution -0.792 1.803 -0.936 2.180 sum 3.293 -14.353 11.015 18.390 Atomic orbital electron populations 1.69757 1.05843 1.25498 1.59926 1.25206 0.96106 0.99826 1.04402 0.85440 0.78241 0.81756 0.76597 1.20276 1.21946 1.22620 1.19294 0.91211 0.85138 1.39214 0.91950 1.42107 1.04969 1.00294 1.86903 1.21093 0.92878 0.87075 0.92030 1.21544 0.94851 0.99446 0.83236 1.45468 1.10563 1.72773 1.05741 1.17444 0.86432 0.76141 0.82868 1.90720 1.15484 1.52863 1.86768 1.21341 0.93311 1.23390 0.94550 1.23546 0.96539 0.92768 0.88604 1.45953 1.08670 1.54101 1.06629 0.68971 1.77234 0.89871 1.25635 1.19612 1.22007 0.93209 0.96167 0.89949 1.17903 0.87922 1.03637 0.95827 1.21418 0.93480 0.96241 0.97537 1.21344 0.95041 1.01307 0.98045 1.21604 1.01083 0.96786 0.93014 1.21351 0.92181 1.00699 1.00981 1.21337 0.97040 0.98764 0.95015 1.23456 0.98074 1.00020 0.98128 1.22568 0.96835 1.00069 0.96574 1.23134 0.99714 0.97102 0.96372 0.94245 0.78782 0.90974 0.95073 0.75943 0.75714 0.86160 0.84441 0.83047 0.83101 0.85562 0.93940 0.88914 0.89743 0.92218 0.87482 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.56 13.07 21.65 0.28 -55.27 16 2 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 3 Si 0.95 46.45 29.56 68.60 2.03 48.48 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 7 C -0.22 -11.39 9.42 84.03 0.79 -10.60 16 8 H 0.06 3.38 6.92 -2.91 -0.02 3.36 16 9 N -0.70 -31.30 5.24 -300.96 -1.58 -32.88 16 10 C 0.16 5.47 0.85 4.13 0.00 5.47 16 11 C 0.14 4.69 4.98 86.38 0.43 5.12 16 12 N -0.70 -21.93 5.43 -466.49 -2.53 -24.46 16 13 C 0.58 20.15 7.53 86.62 0.65 20.80 16 14 O -0.58 -23.57 12.77 -4.10 -0.05 -23.62 16 15 C -0.31 -9.16 6.26 -18.78 -0.12 -9.28 16 16 C 0.14 2.76 11.50 84.27 0.97 3.73 16 17 N -0.45 -8.27 7.20 -56.43 -0.41 -8.68 16 18 H 0.46 4.59 8.96 -213.53 -1.91 2.68 16 19 N -0.30 -8.08 12.63 -44.53 -0.56 -8.64 16 20 C 0.15 4.76 6.94 44.07 0.31 5.07 16 21 C -0.05 -1.58 5.70 -20.05 -0.11 -1.69 16 22 C -0.07 -2.08 7.75 22.49 0.17 -1.90 16 23 C -0.14 -3.55 10.03 22.24 0.22 -3.32 16 24 C -0.11 -2.26 10.04 22.31 0.22 -2.03 16 25 C -0.13 -2.91 10.03 22.23 0.22 -2.69 16 26 C -0.10 -2.72 9.76 22.49 0.22 -2.50 16 27 C -0.16 -4.97 7.39 31.12 0.23 -4.74 16 28 C -0.12 -3.35 7.99 31.12 0.25 -3.10 16 29 C -0.13 -3.19 6.95 31.12 0.22 -2.98 16 30 H 0.25 14.18 8.31 -92.71 -0.77 13.40 16 31 H 0.38 17.93 7.83 -92.71 -0.73 17.20 16 32 H 0.07 2.23 8.02 -2.39 -0.02 2.21 16 33 H 0.03 1.34 6.92 -2.39 -0.02 1.32 16 34 H 0.41 10.95 7.21 -92.71 -0.67 10.28 16 35 H 0.23 2.70 7.50 -2.91 -0.02 2.68 16 36 H 0.12 4.07 5.88 -2.91 -0.02 4.05 16 37 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.13 3.11 8.06 -2.91 -0.02 3.08 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.09 2.48 8.02 -2.39 -0.02 2.46 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.11 2.19 8.10 -2.39 -0.02 2.17 16 46 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 Total: -1.00 -73.82 384.29 0.06 -73.76 By element: Atomic # 1 Polarization: 41.23 SS G_CDS: -2.26 Total: 38.97 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 5.15 Total: -7.65 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -4.80 Total: -129.94 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -73.82 0.06 -73.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754989578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.500 kcal (2) G-P(sol) polarization free energy of solvation -73.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds