Wall clock time and date at job start Sat Apr 11 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99971 * 2 1 4 4 H 1.48498 * 109.47037 * 239.99968 * 3 2 1 5 5 H 1.48499 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46830 * 120.00188 * 3 2 1 7 7 C 1.38818 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00222 * 190.85903 * 7 2 1 9 9 N 1.36943 * 119.99763 * 10.85427 * 7 2 1 10 10 C 1.46679 * 121.32816 * 28.06261 * 9 7 2 11 11 C 1.50815 * 109.68544 * 135.69962 * 10 9 7 12 12 C 1.38844 * 117.81247 * 191.35617 * 11 10 9 13 13 C 1.37954 * 120.50415 * 180.46496 * 12 11 10 14 14 C 1.38264 * 119.72287 * 0.08134 * 13 12 11 15 15 C 1.37908 * 119.82188 * 359.75681 * 14 13 12 16 16 C 1.37671 * 122.34619 * 11.44780 * 11 10 9 17 17 C 1.50601 * 122.85523 * 358.57596 * 16 11 10 18 18 C 1.47232 * 121.32753 * 208.08750 * 9 7 2 19 19 H 1.09000 * 109.77456 * 124.55004 * 18 9 7 20 20 C 1.52999 * 109.77589 * 3.79823 * 18 9 7 21 21 N 1.46503 * 109.46917 * 55.00341 * 20 18 9 22 22 C 1.34779 * 119.99939 * 179.97438 * 21 20 18 23 23 O 1.21282 * 120.00100 * 0.02562 * 22 21 20 24 24 C 1.50707 * 119.99642 * 180.02562 * 22 21 20 25 25 C 1.50705 * 109.46590 * 179.97438 * 24 22 21 26 26 C 1.34675 * 126.58900 * 84.98088 * 25 24 22 27 27 N 1.34129 * 108.01977 * 180.02562 * 26 25 24 28 28 C 1.30498 * 109.25657 * 359.97438 * 27 26 25 29 29 N 1.35050 * 108.70188 * 0.26459 * 28 27 26 30 30 H 0.96998 * 126.40254 * 179.73431 * 29 28 27 31 31 H 0.97001 * 120.00285 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.43414 * 255.76317 * 10 9 7 33 33 H 1.08997 * 109.43817 * 15.67802 * 10 9 7 34 34 H 1.08000 * 119.74518 * 0.49023 * 12 11 10 35 35 H 1.08001 * 120.13337 * 180.08426 * 13 12 11 36 36 H 1.08003 * 120.08686 * 179.77622 * 14 13 12 37 37 H 1.08002 * 119.70497 * 179.97438 * 15 14 13 38 38 H 1.09008 * 109.19987 * 259.87239 * 17 16 11 39 39 H 1.09003 * 109.20551 * 140.58046 * 17 16 11 40 40 H 1.08997 * 109.47722 * 295.00561 * 20 18 9 41 41 H 1.09000 * 109.47040 * 175.00072 * 20 18 9 42 42 H 0.97004 * 120.00143 * 0.02562 * 21 20 18 43 43 H 1.08998 * 109.47096 * 60.00555 * 24 22 21 44 44 H 1.09000 * 109.47124 * 299.99942 * 24 22 21 45 45 H 1.08006 * 125.98813 * 0.03354 * 26 25 24 46 46 H 1.08000 * 125.65473 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0757 -1.2107 0.1756 9 7 1.3439 -2.3774 -0.2244 10 6 0.1200 -2.4183 -1.0318 11 6 0.1765 -3.5889 -1.9810 12 6 -0.7772 -3.6528 -2.9881 13 6 -0.7830 -4.7042 -3.8813 14 6 0.1673 -5.7025 -3.7712 15 6 1.1170 -5.6382 -2.7734 16 6 1.1291 -4.5772 -1.8759 17 6 2.2117 -4.5605 -0.8291 18 6 1.8271 -3.6502 0.3362 19 1 1.0377 -4.1172 0.9251 20 6 3.0501 -3.3956 1.2196 21 7 2.7155 -2.4011 2.2420 22 6 3.6453 -2.0182 3.1394 23 8 4.7591 -2.4965 3.1003 24 6 3.3008 -0.9956 4.1915 25 6 4.5051 -0.7456 5.0623 26 6 5.5120 0.1132 4.8126 27 7 6.3840 0.0370 5.8289 28 6 5.9555 -0.8360 6.6991 29 7 4.7886 -1.3519 6.2563 30 1 4.2508 -2.0249 6.7021 31 1 -0.4850 0.8400 0.0004 32 1 -0.7439 -2.5248 -0.3757 33 1 0.0306 -1.4937 -1.6020 34 1 -1.5198 -2.8733 -3.0731 35 1 -1.5268 -4.7472 -4.6632 36 1 0.1659 -6.5301 -4.4650 37 1 1.8582 -6.4192 -2.6889 38 1 3.1375 -4.1985 -1.2765 39 1 2.3664 -5.5733 -0.4571 40 1 3.8706 -3.0238 0.6059 41 1 3.3498 -4.3260 1.7020 42 1 1.8245 -2.0188 2.2735 43 1 2.4803 -1.3677 4.8049 44 1 3.0011 -0.0650 3.7093 45 1 5.6015 0.7516 3.9460 46 1 6.4536 -1.1046 7.6189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755076063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:05 Heat of formation + Delta-G solvation = 70.962582 kcal Electronic energy + Delta-G solvation = -29431.362058 eV Core-core repulsion = 25515.245544 eV Total energy + Delta-G solvation = -3916.116514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.90629 -39.53202 -38.87349 -36.60695 -33.74528 -32.97207 -32.65419 -31.70287 -31.43629 -30.24075 -29.00020 -27.13802 -25.66293 -25.01789 -22.88686 -21.61785 -21.55340 -21.23281 -20.77149 -19.89575 -19.09182 -17.83269 -16.94433 -16.27895 -16.10504 -15.54591 -15.23687 -14.83806 -14.64205 -14.57595 -14.29121 -14.20804 -13.85920 -13.56984 -13.34130 -13.06378 -12.93479 -12.80612 -12.61464 -12.49874 -12.38426 -11.91145 -11.61217 -11.57981 -11.14958 -10.91631 -10.88462 -10.75058 -10.57250 -10.24066 -10.05651 -9.90865 -9.88442 -9.77357 -9.39929 -8.82360 -8.33951 -8.25936 -8.22005 -7.89209 -6.87441 -5.97230 -3.41909 1.83155 1.90747 2.12992 3.10478 3.20999 3.28202 3.30771 3.35407 3.39153 3.89803 4.25224 4.33125 4.71923 4.92451 5.08702 5.16692 5.17011 5.24112 5.32885 5.39993 5.43564 5.52788 5.54355 5.67935 5.73651 5.78328 5.85985 5.90266 6.00627 6.02221 6.15410 6.25690 6.31661 6.34298 6.51465 6.58661 6.76359 6.87729 6.90918 6.92029 7.08374 7.09772 7.15112 7.45558 7.45873 7.59654 7.67364 8.16545 8.18891 8.22480 8.81032 9.01885 9.61433 10.19972 11.11532 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.003240 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.004835 B = 8639.810828 C =10041.236679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.008 3.992 3 Si 0.897 3.103 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.588 5.588 10 C 0.208 3.792 11 C -0.078 4.078 12 C -0.123 4.123 13 C -0.130 4.130 14 C -0.140 4.140 15 C -0.128 4.128 16 C -0.068 4.068 17 C -0.091 4.091 18 C 0.158 3.842 19 H 0.041 0.959 20 C 0.138 3.862 21 N -0.692 5.692 22 C 0.508 3.492 23 O -0.555 6.555 24 C -0.069 4.069 25 C 0.007 3.993 26 C -0.011 4.011 27 N -0.495 5.495 28 C 0.176 3.824 29 N -0.564 5.564 30 H 0.416 0.584 31 H 0.257 0.743 32 H 0.042 0.958 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.417 0.583 43 H 0.096 0.904 44 H 0.120 0.880 45 H 0.167 0.833 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -7.460 5.299 9.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.191 4.191 3 Si 0.726 3.274 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.312 5.312 10 C 0.083 3.917 11 C -0.079 4.079 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.130 4.130 18 C 0.051 3.949 19 H 0.059 0.941 20 C 0.013 3.987 21 N -0.343 5.343 22 C 0.293 3.707 23 O -0.434 6.434 24 C -0.110 4.110 25 C -0.109 4.109 26 C -0.159 4.159 27 N -0.214 5.214 28 C -0.107 4.107 29 N -0.168 5.168 30 H 0.253 0.747 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.254 0.746 43 H 0.114 0.886 44 H 0.138 0.862 45 H 0.184 0.816 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.120 -7.125 5.320 8.962 hybrid contribution -1.064 0.213 -0.176 1.100 sum 0.056 -6.912 5.144 8.616 Atomic orbital electron populations 1.69946 1.05074 1.25898 1.54047 1.25039 0.95333 0.98081 1.00620 0.86452 0.78944 0.83353 0.78607 1.20986 1.21571 1.20503 1.19090 0.91326 0.83198 1.43999 0.91040 1.44030 1.28505 1.02254 1.56400 1.19777 0.88587 0.93040 0.90309 1.21024 0.93229 0.97226 0.96470 1.21120 0.99195 0.98397 0.95487 1.20955 0.99186 0.95198 0.99498 1.20852 0.96664 0.99186 0.99119 1.21125 0.99048 0.98424 0.95974 1.19481 0.96514 0.94013 0.96823 1.20887 0.96943 0.99454 0.95724 1.20710 0.93864 0.88679 0.91635 0.94086 1.21222 0.97659 0.90589 0.89196 1.45892 1.15994 1.42667 1.29758 1.20273 0.85123 0.82760 0.82562 1.90680 1.21652 1.56844 1.74216 1.20068 0.94349 1.01435 0.95122 1.20572 1.00647 1.00371 0.89334 1.22027 0.91829 1.02707 0.99361 1.70238 1.28928 1.19095 1.03168 1.24833 0.87056 0.97259 1.01572 1.43160 1.21078 1.33925 1.18587 0.74669 0.93323 0.94020 0.88565 0.86464 0.86988 0.87121 0.87097 0.90787 0.91915 0.91556 0.92619 0.74562 0.88589 0.86215 0.81604 0.77890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -22.77 11.06 55.49 0.61 -22.16 16 2 C 0.01 0.20 5.08 -17.43 -0.09 0.11 16 3 Si 0.90 19.99 29.57 -169.99 -5.03 14.96 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.25 -5.73 6.96 -15.05 -0.10 -5.84 16 8 H 0.07 1.72 6.18 -52.49 -0.32 1.40 16 9 N -0.59 -12.53 2.85 -166.39 -0.47 -13.01 16 10 C 0.21 4.46 4.80 -5.04 -0.02 4.44 16 11 C -0.08 -1.48 5.82 -104.55 -0.61 -2.08 16 12 C -0.12 -2.09 9.62 -39.46 -0.38 -2.47 16 13 C -0.13 -1.93 10.05 -39.68 -0.40 -2.33 16 14 C -0.14 -2.02 10.04 -39.69 -0.40 -2.41 16 15 C -0.13 -1.96 9.59 -39.43 -0.38 -2.33 16 16 C -0.07 -1.19 5.76 -104.61 -0.60 -1.79 16 17 C -0.09 -1.49 5.21 -28.04 -0.15 -1.64 16 18 C 0.16 2.84 3.02 -67.64 -0.20 2.63 16 19 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 20 C 0.14 2.39 4.45 -4.04 -0.02 2.37 16 21 N -0.69 -11.94 4.01 -60.29 -0.24 -12.18 16 22 C 0.51 8.73 7.82 -10.98 -0.09 8.64 16 23 O -0.55 -11.39 16.03 5.56 0.09 -11.30 16 24 C -0.07 -0.95 6.26 -29.03 -0.18 -1.13 16 25 C 0.01 0.10 5.73 -81.60 -0.47 -0.37 16 26 C -0.01 -0.19 11.79 -17.81 -0.21 -0.40 16 27 N -0.50 -7.96 11.25 -14.66 -0.16 -8.12 16 28 C 0.18 2.14 13.04 -90.37 -1.18 0.97 16 29 N -0.56 -6.53 6.15 -10.29 -0.06 -6.59 16 30 H 0.42 3.35 8.96 -40.82 -0.37 2.98 16 31 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 2.33 6.46 -51.93 -0.34 2.00 16 34 H 0.12 1.86 8.05 -52.49 -0.42 1.44 16 35 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.11 1.45 8.05 -52.49 -0.42 1.03 16 38 H 0.07 1.26 8.01 -51.92 -0.42 0.85 16 39 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 40 H 0.07 1.28 7.31 -51.93 -0.38 0.90 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.42 7.43 7.34 -40.82 -0.30 7.14 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 45 H 0.17 2.66 8.06 -52.48 -0.42 2.23 16 46 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -30.40 377.05 -11.39 -41.79 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -6.33 Total: 14.57 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -5.48 Total: -3.64 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.33 Total: -62.06 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.40 -11.39 -41.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755076063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.749 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds