Wall clock time and date at job start Sat Apr 11 2020 06:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99971 * 2 1 4 4 H 1.48498 * 109.47037 * 239.99968 * 3 2 1 5 5 H 1.48499 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46830 * 120.00188 * 3 2 1 7 7 C 1.38818 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00222 * 190.85903 * 7 2 1 9 9 N 1.36943 * 119.99763 * 10.85427 * 7 2 1 10 10 C 1.46679 * 121.32816 * 28.06261 * 9 7 2 11 11 C 1.50815 * 109.68544 * 135.69962 * 10 9 7 12 12 C 1.38844 * 117.81247 * 191.35617 * 11 10 9 13 13 C 1.37954 * 120.50415 * 180.46496 * 12 11 10 14 14 C 1.38264 * 119.72287 * 0.08134 * 13 12 11 15 15 C 1.37908 * 119.82188 * 359.75681 * 14 13 12 16 16 C 1.37671 * 122.34619 * 11.44780 * 11 10 9 17 17 C 1.50601 * 122.85523 * 358.57596 * 16 11 10 18 18 C 1.47232 * 121.32753 * 208.08750 * 9 7 2 19 19 H 1.09000 * 109.77456 * 124.55004 * 18 9 7 20 20 C 1.52999 * 109.77589 * 3.79823 * 18 9 7 21 21 N 1.46503 * 109.46917 * 55.00341 * 20 18 9 22 22 C 1.34779 * 119.99939 * 179.97438 * 21 20 18 23 23 O 1.21282 * 120.00100 * 0.02562 * 22 21 20 24 24 C 1.50707 * 119.99642 * 180.02562 * 22 21 20 25 25 C 1.50705 * 109.46590 * 179.97438 * 24 22 21 26 26 C 1.34675 * 126.58900 * 84.98088 * 25 24 22 27 27 N 1.34129 * 108.01977 * 180.02562 * 26 25 24 28 28 C 1.30498 * 109.25657 * 359.97438 * 27 26 25 29 29 N 1.35050 * 108.70188 * 0.26459 * 28 27 26 30 30 H 0.96998 * 126.40254 * 179.73431 * 29 28 27 31 31 H 0.97001 * 120.00285 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.43414 * 255.76317 * 10 9 7 33 33 H 1.08997 * 109.43817 * 15.67802 * 10 9 7 34 34 H 1.08000 * 119.74518 * 0.49023 * 12 11 10 35 35 H 1.08001 * 120.13337 * 180.08426 * 13 12 11 36 36 H 1.08003 * 120.08686 * 179.77622 * 14 13 12 37 37 H 1.08002 * 119.70497 * 179.97438 * 15 14 13 38 38 H 1.09008 * 109.19987 * 259.87239 * 17 16 11 39 39 H 1.09003 * 109.20551 * 140.58046 * 17 16 11 40 40 H 1.08997 * 109.47722 * 295.00561 * 20 18 9 41 41 H 1.09000 * 109.47040 * 175.00072 * 20 18 9 42 42 H 0.97004 * 120.00143 * 0.02562 * 21 20 18 43 43 H 1.08998 * 109.47096 * 60.00555 * 24 22 21 44 44 H 1.09000 * 109.47124 * 299.99942 * 24 22 21 45 45 H 1.08006 * 125.98813 * 0.03354 * 26 25 24 46 46 H 1.08000 * 125.65473 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0757 -1.2107 0.1756 9 7 1.3439 -2.3774 -0.2244 10 6 0.1200 -2.4183 -1.0318 11 6 0.1765 -3.5889 -1.9810 12 6 -0.7772 -3.6528 -2.9881 13 6 -0.7830 -4.7042 -3.8813 14 6 0.1673 -5.7025 -3.7712 15 6 1.1170 -5.6382 -2.7734 16 6 1.1291 -4.5772 -1.8759 17 6 2.2117 -4.5605 -0.8291 18 6 1.8271 -3.6502 0.3362 19 1 1.0377 -4.1172 0.9251 20 6 3.0501 -3.3956 1.2196 21 7 2.7155 -2.4011 2.2420 22 6 3.6453 -2.0182 3.1394 23 8 4.7591 -2.4965 3.1003 24 6 3.3008 -0.9956 4.1915 25 6 4.5051 -0.7456 5.0623 26 6 5.5120 0.1132 4.8126 27 7 6.3840 0.0370 5.8289 28 6 5.9555 -0.8360 6.6991 29 7 4.7886 -1.3519 6.2563 30 1 4.2508 -2.0249 6.7021 31 1 -0.4850 0.8400 0.0004 32 1 -0.7439 -2.5248 -0.3757 33 1 0.0306 -1.4937 -1.6020 34 1 -1.5198 -2.8733 -3.0731 35 1 -1.5268 -4.7472 -4.6632 36 1 0.1659 -6.5301 -4.4650 37 1 1.8582 -6.4192 -2.6889 38 1 3.1375 -4.1985 -1.2765 39 1 2.3664 -5.5733 -0.4571 40 1 3.8706 -3.0238 0.6059 41 1 3.3498 -4.3260 1.7020 42 1 1.8245 -2.0188 2.2735 43 1 2.4803 -1.3677 4.8049 44 1 3.0011 -0.0650 3.7093 45 1 5.6015 0.7516 3.9460 46 1 6.4536 -1.1046 7.6189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755076063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:03 Heat of formation + Delta-G solvation = 53.915068 kcal Electronic energy + Delta-G solvation = -29432.101293 eV Core-core repulsion = 25515.245544 eV Total energy + Delta-G solvation = -3916.855750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.95894 -40.92137 -40.23677 -38.07113 -35.29295 -34.48704 -33.77586 -32.98118 -32.75772 -31.66494 -30.45751 -28.31180 -27.33910 -26.31819 -24.51684 -22.88742 -22.75519 -22.42338 -21.97231 -21.21875 -20.57123 -18.96333 -18.37986 -17.72508 -17.57836 -16.95285 -16.55054 -16.24986 -16.02719 -15.85334 -15.68899 -15.49652 -15.10942 -15.06111 -14.59196 -14.48218 -14.29071 -14.09134 -13.92284 -13.77710 -13.70847 -13.23844 -13.18866 -12.93709 -12.70641 -12.59176 -12.48251 -12.26460 -12.15411 -11.84966 -11.59667 -11.29873 -11.01997 -10.97360 -10.78385 -10.62995 -9.79916 -9.53046 -9.33502 -9.25377 -8.64445 -7.84331 -5.28615 0.59403 0.63492 1.06424 1.45283 1.51304 1.54323 1.76576 2.16292 2.27314 2.48573 2.62255 2.99165 3.34363 3.53352 3.69608 3.86326 3.96819 4.10122 4.12151 4.15656 4.24533 4.25941 4.40883 4.44022 4.52669 4.55875 4.63260 4.69306 4.69875 4.73334 4.84357 4.93204 4.94091 5.22357 5.24068 5.25455 5.28176 5.44980 5.53625 5.65248 5.71102 5.74313 5.74951 5.75984 6.02770 6.28690 6.38063 6.60256 6.78548 7.12865 7.17179 7.41123 7.83019 8.39158 9.22523 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.003240 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.004835 B = 8639.810828 C =10041.236679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.028 4.028 3 Si 0.937 3.063 4 H -0.296 1.296 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.231 4.231 8 H 0.063 0.937 9 N -0.599 5.599 10 C 0.224 3.776 11 C -0.109 4.109 12 C -0.138 4.138 13 C -0.128 4.128 14 C -0.132 4.132 15 C -0.128 4.128 16 C -0.084 4.084 17 C -0.085 4.085 18 C 0.161 3.839 19 H 0.045 0.955 20 C 0.143 3.857 21 N -0.692 5.692 22 C 0.508 3.492 23 O -0.589 6.589 24 C -0.061 4.061 25 C 0.001 3.999 26 C -0.045 4.045 27 N -0.538 5.538 28 C 0.193 3.807 29 N -0.552 5.552 30 H 0.435 0.565 31 H 0.250 0.750 32 H 0.017 0.983 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.139 0.861 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.414 0.586 43 H 0.132 0.868 44 H 0.118 0.882 45 H 0.153 0.847 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.210 -10.205 5.690 11.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.224 4.224 3 Si 0.767 3.233 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.361 4.361 8 H 0.080 0.920 9 N -0.323 5.323 10 C 0.099 3.901 11 C -0.110 4.110 12 C -0.156 4.156 13 C -0.145 4.145 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.084 4.084 17 C -0.124 4.124 18 C 0.055 3.945 19 H 0.063 0.937 20 C 0.019 3.981 21 N -0.342 5.342 22 C 0.295 3.705 23 O -0.471 6.471 24 C -0.102 4.102 25 C -0.116 4.116 26 C -0.193 4.193 27 N -0.258 5.258 28 C -0.091 4.091 29 N -0.156 5.156 30 H 0.275 0.725 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.251 0.749 43 H 0.150 0.850 44 H 0.136 0.864 45 H 0.171 0.829 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 1.207 -9.901 5.721 11.499 hybrid contribution -1.069 0.956 -0.338 1.474 sum 0.137 -8.945 5.383 10.441 Atomic orbital electron populations 1.70061 1.05792 1.25564 1.55796 1.25404 0.95681 0.99690 1.01642 0.85823 0.77882 0.81453 0.78183 1.22349 1.22173 1.19595 1.19053 0.90844 0.84034 1.42151 0.91963 1.44162 1.28290 1.02957 1.56912 1.19334 0.87849 0.92914 0.90046 1.20816 0.95563 0.97235 0.97403 1.21238 0.99002 0.99511 0.95863 1.21304 0.99826 0.94204 0.99207 1.21323 0.95268 0.99553 0.98816 1.21435 0.99785 0.98076 0.95303 1.19664 0.96353 0.94521 0.97903 1.20837 0.96237 1.00600 0.94772 1.20826 0.93934 0.87358 0.92424 0.93692 1.21160 0.96550 0.91323 0.89064 1.45921 1.15896 1.42633 1.29745 1.20783 0.84330 0.82660 0.82719 1.90660 1.22936 1.58271 1.75197 1.20035 0.95301 1.00268 0.94557 1.20535 1.00353 1.00338 0.90376 1.22080 0.93233 1.04049 0.99894 1.70191 1.30042 1.21406 1.04180 1.25733 0.86470 0.95124 1.01760 1.43114 1.21120 1.33818 1.17578 0.72451 0.94071 0.96550 0.92249 0.86696 0.84020 0.83475 0.84293 0.91608 0.88717 0.93782 0.90684 0.74857 0.85018 0.86431 0.82910 0.73337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -48.52 11.06 21.65 0.24 -48.28 16 2 C -0.03 -1.38 5.08 84.86 0.43 -0.95 16 3 Si 0.94 42.26 29.57 68.60 2.03 44.29 16 4 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 5 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.23 -11.03 6.96 84.03 0.58 -10.44 16 8 H 0.06 3.09 6.18 -2.91 -0.02 3.07 16 9 N -0.60 -26.21 2.85 -680.33 -1.94 -28.15 16 10 C 0.22 10.05 4.80 85.64 0.41 10.46 16 11 C -0.11 -4.15 5.82 -19.82 -0.12 -4.27 16 12 C -0.14 -4.62 9.62 22.35 0.22 -4.41 16 13 C -0.13 -3.44 10.05 22.21 0.22 -3.21 16 14 C -0.13 -3.25 10.04 22.20 0.22 -3.03 16 15 C -0.13 -3.49 9.59 22.37 0.21 -3.28 16 16 C -0.08 -2.83 5.76 -19.85 -0.11 -2.94 16 17 C -0.09 -2.68 5.21 29.75 0.15 -2.53 16 18 C 0.16 5.71 3.02 44.78 0.14 5.85 16 19 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 20 C 0.14 4.94 4.45 86.38 0.38 5.32 16 21 N -0.69 -23.80 4.01 -463.05 -1.86 -25.66 16 22 C 0.51 17.30 7.82 87.66 0.69 17.99 16 23 O -0.59 -24.11 16.03 -3.04 -0.05 -24.16 16 24 C -0.06 -1.62 6.26 29.11 0.18 -1.44 16 25 C 0.00 0.03 5.73 40.96 0.23 0.26 16 26 C -0.05 -1.51 11.79 83.52 0.98 -0.53 16 27 N -0.54 -17.04 11.25 -200.30 -2.25 -19.29 16 28 C 0.19 4.26 13.04 180.26 2.35 6.61 16 29 N -0.55 -11.54 6.15 -186.48 -1.15 -12.68 16 30 H 0.43 5.67 8.96 -92.71 -0.83 4.84 16 31 H 0.25 13.03 8.31 -92.71 -0.77 12.26 16 32 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 3.06 6.46 -2.39 -0.02 3.04 16 34 H 0.11 3.76 8.05 -2.91 -0.02 3.74 16 35 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.14 2.98 8.05 -2.91 -0.02 2.96 16 38 H 0.07 2.18 8.01 -2.38 -0.02 2.16 16 39 H 0.09 2.36 8.11 -2.39 -0.02 2.34 16 40 H 0.04 1.72 7.31 -2.39 -0.02 1.70 16 41 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 42 H 0.41 14.84 7.34 -92.71 -0.68 14.16 16 43 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 45 H 0.15 5.21 8.06 -2.91 -0.02 5.19 16 46 H 0.25 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -69.13 377.05 1.72 -67.41 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: -0.49 Total: 37.06 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 7.19 Total: 9.46 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -6.96 Total: -134.06 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.05 Total: -24.16 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -69.13 1.72 -67.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755076063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.324 kcal (2) G-P(sol) polarization free energy of solvation -69.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds