Wall clock time and date at job start Sat Apr 11 2020 06:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99748 * 2 1 4 4 H 1.48504 * 109.46889 * 239.99676 * 3 2 1 5 5 H 1.48496 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46968 * 119.99807 * 3 2 1 7 7 C 1.38810 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00000 * 192.01027 * 7 2 1 9 9 N 1.36933 * 120.00227 * 12.01026 * 7 2 1 10 10 C 1.47229 * 121.32801 * 37.27818 * 9 7 2 11 11 C 1.52789 * 107.90525 * 115.83687 * 10 9 7 12 12 C 1.50603 * 110.85725 * 47.51875 * 11 10 9 13 13 C 1.38982 * 117.62978 * 160.28999 * 12 11 10 14 14 C 1.37902 * 120.58223 * 178.87482 * 13 12 11 15 15 C 1.38262 * 119.82594 * 0.08759 * 14 13 12 16 16 C 1.37963 * 119.71655 * 0.25213 * 15 14 13 17 17 C 1.37668 * 122.85034 * 339.69550 * 12 11 10 18 18 C 1.46687 * 121.32939 * 217.30491 * 9 7 2 19 19 H 1.09002 * 109.39929 * 104.31817 * 18 9 7 20 20 C 1.53002 * 109.43420 * 344.42865 * 18 9 7 21 21 N 1.46499 * 109.47314 * 61.06077 * 20 18 9 22 22 C 1.34773 * 120.00160 * 183.40764 * 21 20 18 23 23 O 1.21282 * 119.99627 * 359.97438 * 22 21 20 24 24 C 1.50700 * 120.00045 * 180.02562 * 22 21 20 25 25 C 1.50705 * 109.46810 * 179.97438 * 24 22 21 26 26 C 1.34667 * 126.59089 * 274.67990 * 25 24 22 27 27 N 1.34134 * 108.01998 * 179.87719 * 26 25 24 28 28 C 1.30498 * 109.25297 * 0.40101 * 27 26 25 29 29 N 1.35046 * 108.70066 * 359.75477 * 28 27 26 30 30 H 0.96997 * 126.39500 * 179.97438 * 29 28 27 31 31 H 0.96994 * 120.00210 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.77448 * 235.43673 * 10 9 7 33 33 H 1.08999 * 109.77374 * 356.18094 * 10 9 7 34 34 H 1.08997 * 109.20056 * 167.88693 * 11 10 9 35 35 H 1.09004 * 109.20548 * 287.22822 * 11 10 9 36 36 H 1.07997 * 119.70674 * 359.15807 * 13 12 11 37 37 H 1.07998 * 120.08824 * 180.02562 * 14 13 12 38 38 H 1.08007 * 120.14050 * 180.28078 * 15 14 13 39 39 H 1.08000 * 119.74559 * 179.84210 * 16 15 14 40 40 H 1.08994 * 109.46789 * 181.06091 * 20 18 9 41 41 H 1.09006 * 109.47004 * 301.05882 * 20 18 9 42 42 H 0.97005 * 119.99746 * 3.39363 * 21 20 18 43 43 H 1.09000 * 109.47227 * 299.99311 * 24 22 21 44 44 H 1.09000 * 109.47261 * 59.99411 * 24 22 21 45 45 H 1.08000 * 125.98968 * 0.03908 * 26 25 24 46 46 H 1.07993 * 125.64743 * 179.77252 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0726 -1.2122 0.1952 9 7 1.3482 -2.3752 -0.2457 10 6 0.2581 -2.4463 -1.2328 11 6 0.7038 -3.3785 -2.3584 12 6 1.2819 -4.6529 -1.8019 13 6 1.3444 -5.7550 -2.6464 14 6 1.8835 -6.9458 -2.2071 15 6 2.3653 -7.0475 -0.9152 16 6 2.2981 -5.9572 -0.0725 17 6 1.7532 -4.7587 -0.5127 18 6 1.6963 -3.6109 0.4639 19 1 0.9416 -3.8175 1.2227 20 6 3.0612 -3.4453 1.1351 21 7 2.9982 -2.3502 2.1062 22 6 4.1082 -1.9757 2.7725 23 8 5.1592 -2.5457 2.5686 24 6 4.0433 -0.8496 3.7719 25 6 5.4082 -0.6318 4.3726 26 6 5.9365 -1.2874 5.4236 27 7 7.1676 -0.8007 5.6400 28 6 7.4188 0.1373 4.7682 29 7 6.3467 0.2744 3.9586 30 1 6.2581 0.8988 3.2216 31 1 -0.4850 0.8400 -0.0004 32 1 -0.6414 -2.8417 -0.7610 33 1 0.0580 -1.4525 -1.6334 34 1 -0.1543 -3.6181 -2.9863 35 1 1.4602 -2.8762 -2.9616 36 1 0.9715 -5.6767 -3.6569 37 1 1.9285 -7.7970 -2.8703 38 1 2.7927 -7.9763 -0.5673 39 1 2.6720 -6.0369 0.9377 40 1 3.3289 -4.3697 1.6468 41 1 3.8127 -3.2177 0.3790 42 1 2.1576 -1.8945 2.2694 43 1 3.7167 0.0619 3.2714 44 1 3.3358 -1.1043 4.5609 45 1 5.4546 -2.0697 5.9911 46 1 8.3328 0.7091 4.7046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755171379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:20 Heat of formation + Delta-G solvation = 72.667827 kcal Electronic energy + Delta-G solvation = -29741.788919 eV Core-core repulsion = 25825.746350 eV Total energy + Delta-G solvation = -3916.042569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.90145 -39.73705 -38.83469 -36.37376 -34.18117 -32.69678 -32.54456 -32.13337 -31.49612 -29.96472 -28.88894 -27.31268 -26.12475 -24.62863 -22.60537 -22.17251 -21.52176 -21.11400 -20.69677 -19.92371 -19.07236 -17.81857 -17.01679 -16.23259 -16.06695 -15.77970 -15.32483 -14.88380 -14.67652 -14.58334 -14.40511 -14.16525 -13.81158 -13.49545 -13.43928 -13.33782 -12.98898 -12.83161 -12.66266 -12.45776 -12.19049 -12.01260 -11.70460 -11.47295 -11.25358 -11.04485 -10.95822 -10.80482 -10.58214 -10.31936 -9.94564 -9.91857 -9.87523 -9.70468 -9.41097 -8.77538 -8.40433 -8.27110 -8.22385 -8.08914 -6.75707 -6.01830 -3.55736 1.74100 1.78468 2.14558 3.09647 3.14892 3.21697 3.24674 3.26011 3.30484 3.89112 4.15089 4.23793 4.72229 4.93477 5.10967 5.13626 5.18929 5.21425 5.28360 5.33806 5.37111 5.52332 5.54015 5.63570 5.66138 5.77158 5.78325 5.94919 5.99381 6.15887 6.16746 6.23942 6.35044 6.36402 6.44305 6.61805 6.69069 6.82985 6.83643 6.85832 7.06043 7.09016 7.24886 7.35661 7.46947 7.49580 7.62753 8.15761 8.18850 8.27234 8.80371 8.96258 9.55823 10.21631 11.04473 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010655 B = 0.003998 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.231792 B = 7001.859990 C = 9135.659603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.014 3.986 3 Si 0.897 3.103 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.255 4.255 8 H 0.068 0.932 9 N -0.583 5.583 10 C 0.166 3.834 11 C -0.108 4.108 12 C -0.049 4.049 13 C -0.131 4.131 14 C -0.129 4.129 15 C -0.133 4.133 16 C -0.120 4.120 17 C -0.077 4.077 18 C 0.195 3.805 19 H 0.046 0.954 20 C 0.140 3.860 21 N -0.694 5.694 22 C 0.508 3.492 23 O -0.553 6.553 24 C -0.071 4.071 25 C 0.009 3.991 26 C -0.016 4.016 27 N -0.496 5.496 28 C 0.178 3.822 29 N -0.562 5.562 30 H 0.418 0.582 31 H 0.257 0.743 32 H 0.024 0.976 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.415 0.585 43 H 0.102 0.898 44 H 0.115 0.885 45 H 0.166 0.834 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -3.849 2.091 5.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.186 4.186 3 Si 0.727 3.273 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.306 5.306 10 C 0.040 3.960 11 C -0.147 4.147 12 C -0.049 4.049 13 C -0.149 4.149 14 C -0.147 4.147 15 C -0.152 4.152 16 C -0.138 4.138 17 C -0.079 4.079 18 C 0.088 3.912 19 H 0.063 0.937 20 C 0.016 3.984 21 N -0.345 5.345 22 C 0.293 3.707 23 O -0.432 6.432 24 C -0.112 4.112 25 C -0.108 4.108 26 C -0.164 4.164 27 N -0.215 5.215 28 C -0.106 4.106 29 N -0.165 5.165 30 H 0.256 0.744 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.253 0.747 43 H 0.120 0.880 44 H 0.133 0.867 45 H 0.183 0.817 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.156 -4.375 2.613 6.576 hybrid contribution -0.542 1.624 -1.237 2.112 sum 3.614 -2.752 1.375 4.746 Atomic orbital electron populations 1.69943 1.05218 1.25937 1.52370 1.25242 0.95209 0.98212 0.99966 0.86494 0.79006 0.83666 0.78172 1.20918 1.21466 1.21044 1.19080 0.91299 0.83293 1.44747 0.91408 1.43924 1.40331 1.04030 1.42309 1.20819 0.89159 0.98499 0.87520 1.21184 0.99423 0.93857 1.00212 1.19698 0.97030 0.95337 0.92861 1.21199 1.01168 0.93246 0.99333 1.20931 1.00158 0.97506 0.96149 1.20939 1.01474 0.98358 0.94392 1.21150 1.00079 0.92811 0.99788 1.20172 0.97595 0.95301 0.94855 1.19555 0.93932 0.86417 0.91257 0.93726 1.21280 0.97627 0.88553 0.90970 1.46017 1.12253 1.36102 1.40156 1.20261 0.84129 0.84408 0.81936 1.90685 1.29789 1.56079 1.66656 1.20082 0.92539 0.99603 0.98982 1.20569 0.93437 0.96898 0.99870 1.21947 0.92476 1.02801 0.99132 1.70226 1.15862 1.10546 1.24914 1.24825 0.93431 1.00740 0.91585 1.43217 1.14228 1.30979 1.28106 0.74416 0.93267 0.95812 0.88893 0.92302 0.91242 0.86841 0.86911 0.86742 0.86369 0.92433 0.91553 0.74674 0.87981 0.86723 0.81683 0.77884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.49 11.42 55.49 0.63 -21.86 16 2 C 0.01 0.34 5.04 -17.43 -0.09 0.25 16 3 Si 0.90 19.17 29.57 -169.99 -5.03 14.15 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.25 -5.89 6.91 -15.06 -0.10 -5.99 16 8 H 0.07 1.62 5.99 -52.48 -0.31 1.31 16 9 N -0.58 -12.63 2.90 -166.32 -0.48 -13.11 16 10 C 0.17 3.52 5.57 -3.75 -0.02 3.50 16 11 C -0.11 -1.95 5.87 -28.04 -0.16 -2.12 16 12 C -0.05 -0.86 5.76 -104.60 -0.60 -1.47 16 13 C -0.13 -2.00 9.59 -39.43 -0.38 -2.38 16 14 C -0.13 -1.79 10.04 -39.70 -0.40 -2.19 16 15 C -0.13 -1.87 10.05 -39.67 -0.40 -2.27 16 16 C -0.12 -1.86 9.05 -39.47 -0.36 -2.22 16 17 C -0.08 -1.37 5.44 -104.56 -0.57 -1.94 16 18 C 0.20 3.69 3.04 -68.93 -0.21 3.48 16 19 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 20 C 0.14 2.55 4.13 -4.04 -0.02 2.53 16 21 N -0.69 -12.15 3.61 -60.29 -0.22 -12.36 16 22 C 0.51 8.84 7.82 -10.99 -0.09 8.75 16 23 O -0.55 -11.54 16.03 5.56 0.09 -11.45 16 24 C -0.07 -0.99 6.26 -29.03 -0.18 -1.17 16 25 C 0.01 0.13 5.73 -81.60 -0.47 -0.34 16 26 C -0.02 -0.24 11.79 -17.81 -0.21 -0.45 16 27 N -0.50 -7.80 11.25 -14.67 -0.17 -7.96 16 28 C 0.18 2.26 13.04 -90.37 -1.18 1.08 16 29 N -0.56 -7.23 6.15 -10.30 -0.06 -7.29 16 30 H 0.42 4.39 8.96 -40.82 -0.37 4.03 16 31 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 2.20 6.16 -51.93 -0.32 1.88 16 34 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.11 1.50 8.05 -52.49 -0.42 1.08 16 37 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 39 H 0.12 1.66 6.68 -52.49 -0.35 1.31 16 40 H 0.06 0.97 6.58 -51.93 -0.34 0.63 16 41 H 0.07 1.38 7.77 -51.93 -0.40 0.98 16 42 H 0.42 7.38 7.30 -40.82 -0.30 7.08 16 43 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.17 2.24 8.06 -52.49 -0.42 1.82 16 46 H 0.20 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -30.22 374.24 -11.20 -41.42 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -6.18 Total: 15.77 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -5.43 Total: -2.94 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.29 Total: -62.59 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.22 -11.20 -41.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755171379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.085 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds