Wall clock time and date at job start Sat Apr 11 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99748 * 2 1 4 4 H 1.48504 * 109.46889 * 239.99676 * 3 2 1 5 5 H 1.48496 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46968 * 119.99807 * 3 2 1 7 7 C 1.38810 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00000 * 192.01027 * 7 2 1 9 9 N 1.36933 * 120.00227 * 12.01026 * 7 2 1 10 10 C 1.47229 * 121.32801 * 37.27818 * 9 7 2 11 11 C 1.52789 * 107.90525 * 115.83687 * 10 9 7 12 12 C 1.50603 * 110.85725 * 47.51875 * 11 10 9 13 13 C 1.38982 * 117.62978 * 160.28999 * 12 11 10 14 14 C 1.37902 * 120.58223 * 178.87482 * 13 12 11 15 15 C 1.38262 * 119.82594 * 0.08759 * 14 13 12 16 16 C 1.37963 * 119.71655 * 0.25213 * 15 14 13 17 17 C 1.37668 * 122.85034 * 339.69550 * 12 11 10 18 18 C 1.46687 * 121.32939 * 217.30491 * 9 7 2 19 19 H 1.09002 * 109.39929 * 104.31817 * 18 9 7 20 20 C 1.53002 * 109.43420 * 344.42865 * 18 9 7 21 21 N 1.46499 * 109.47314 * 61.06077 * 20 18 9 22 22 C 1.34773 * 120.00160 * 183.40764 * 21 20 18 23 23 O 1.21282 * 119.99627 * 359.97438 * 22 21 20 24 24 C 1.50700 * 120.00045 * 180.02562 * 22 21 20 25 25 C 1.50705 * 109.46810 * 179.97438 * 24 22 21 26 26 C 1.34667 * 126.59089 * 274.67990 * 25 24 22 27 27 N 1.34134 * 108.01998 * 179.87719 * 26 25 24 28 28 C 1.30498 * 109.25297 * 0.40101 * 27 26 25 29 29 N 1.35046 * 108.70066 * 359.75477 * 28 27 26 30 30 H 0.96997 * 126.39500 * 179.97438 * 29 28 27 31 31 H 0.96994 * 120.00210 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.77448 * 235.43673 * 10 9 7 33 33 H 1.08999 * 109.77374 * 356.18094 * 10 9 7 34 34 H 1.08997 * 109.20056 * 167.88693 * 11 10 9 35 35 H 1.09004 * 109.20548 * 287.22822 * 11 10 9 36 36 H 1.07997 * 119.70674 * 359.15807 * 13 12 11 37 37 H 1.07998 * 120.08824 * 180.02562 * 14 13 12 38 38 H 1.08007 * 120.14050 * 180.28078 * 15 14 13 39 39 H 1.08000 * 119.74559 * 179.84210 * 16 15 14 40 40 H 1.08994 * 109.46789 * 181.06091 * 20 18 9 41 41 H 1.09006 * 109.47004 * 301.05882 * 20 18 9 42 42 H 0.97005 * 119.99746 * 3.39363 * 21 20 18 43 43 H 1.09000 * 109.47227 * 299.99311 * 24 22 21 44 44 H 1.09000 * 109.47261 * 59.99411 * 24 22 21 45 45 H 1.08000 * 125.98968 * 0.03908 * 26 25 24 46 46 H 1.07993 * 125.64743 * 179.77252 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0726 -1.2122 0.1952 9 7 1.3482 -2.3752 -0.2457 10 6 0.2581 -2.4463 -1.2328 11 6 0.7038 -3.3785 -2.3584 12 6 1.2819 -4.6529 -1.8019 13 6 1.3444 -5.7550 -2.6464 14 6 1.8835 -6.9458 -2.2071 15 6 2.3653 -7.0475 -0.9152 16 6 2.2981 -5.9572 -0.0725 17 6 1.7532 -4.7587 -0.5127 18 6 1.6963 -3.6109 0.4639 19 1 0.9416 -3.8175 1.2227 20 6 3.0612 -3.4453 1.1351 21 7 2.9982 -2.3502 2.1062 22 6 4.1082 -1.9757 2.7725 23 8 5.1592 -2.5457 2.5686 24 6 4.0433 -0.8496 3.7719 25 6 5.4082 -0.6318 4.3726 26 6 5.9365 -1.2874 5.4236 27 7 7.1676 -0.8007 5.6400 28 6 7.4188 0.1373 4.7682 29 7 6.3467 0.2744 3.9586 30 1 6.2581 0.8988 3.2216 31 1 -0.4850 0.8400 -0.0004 32 1 -0.6414 -2.8417 -0.7610 33 1 0.0580 -1.4525 -1.6334 34 1 -0.1543 -3.6181 -2.9863 35 1 1.4602 -2.8762 -2.9616 36 1 0.9715 -5.6767 -3.6569 37 1 1.9285 -7.7970 -2.8703 38 1 2.7927 -7.9763 -0.5673 39 1 2.6720 -6.0369 0.9377 40 1 3.3289 -4.3697 1.6468 41 1 3.8127 -3.2177 0.3790 42 1 2.1576 -1.8945 2.2694 43 1 3.7167 0.0619 3.2714 44 1 3.3358 -1.1043 4.5609 45 1 5.4546 -2.0697 5.9911 46 1 8.3328 0.7091 4.7046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755171379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:18 Heat of formation + Delta-G solvation = 56.154072 kcal Electronic energy + Delta-G solvation = -29742.505009 eV Core-core repulsion = 25825.746350 eV Total energy + Delta-G solvation = -3916.758659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.95479 -41.10802 -40.20744 -37.85320 -35.68401 -34.20770 -33.86198 -33.40756 -32.63442 -31.49618 -30.21511 -28.60881 -27.56087 -26.16998 -23.99802 -23.64457 -22.62148 -22.32147 -21.93738 -21.25608 -20.54070 -18.96798 -18.45116 -17.74585 -17.48120 -17.17492 -16.70923 -16.26112 -16.00688 -15.93746 -15.71009 -15.50019 -15.13112 -14.98466 -14.74073 -14.47550 -14.29909 -14.02576 -13.91804 -13.83927 -13.56464 -13.47527 -13.08511 -12.99245 -12.76143 -12.66782 -12.52489 -12.21817 -12.05520 -12.04191 -11.47860 -11.27622 -11.04039 -10.97502 -10.81286 -10.56545 -9.80104 -9.59935 -9.36434 -9.30640 -8.52843 -7.84454 -5.40623 0.55078 0.57298 1.07699 1.39900 1.49882 1.53105 1.75595 2.16090 2.27764 2.46840 2.59243 2.94219 3.31291 3.53243 3.68724 3.92976 3.97766 4.01087 4.11091 4.13758 4.17431 4.28065 4.32137 4.42883 4.51554 4.55279 4.59317 4.65579 4.67913 4.71463 4.78768 4.88240 4.98575 5.14692 5.22559 5.25294 5.28156 5.39829 5.60041 5.63517 5.67395 5.71436 5.74811 5.78174 5.93203 6.23256 6.45725 6.53897 6.75529 7.12048 7.14151 7.39178 7.78722 8.42786 9.19591 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010655 B = 0.003998 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.231792 B = 7001.859990 C = 9135.659603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.024 4.024 3 Si 0.943 3.057 4 H -0.295 1.295 5 H -0.297 1.297 6 H -0.261 1.261 7 C -0.244 4.244 8 H 0.061 0.939 9 N -0.596 5.596 10 C 0.171 3.829 11 C -0.096 4.096 12 C -0.076 4.076 13 C -0.134 4.134 14 C -0.124 4.124 15 C -0.129 4.129 16 C -0.127 4.127 17 C -0.101 4.101 18 C 0.200 3.800 19 H 0.039 0.961 20 C 0.151 3.849 21 N -0.693 5.693 22 C 0.508 3.492 23 O -0.589 6.589 24 C -0.061 4.061 25 C -0.007 4.007 26 C -0.034 4.034 27 N -0.534 5.534 28 C 0.189 3.811 29 N -0.561 5.561 30 H 0.429 0.571 31 H 0.251 0.749 32 H 0.009 0.991 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.129 0.871 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.415 0.585 43 H 0.109 0.891 44 H 0.143 0.857 45 H 0.172 0.828 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.029 -5.033 1.972 6.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.222 4.222 3 Si 0.772 3.228 4 H -0.222 1.222 5 H -0.224 1.224 6 H -0.185 1.185 7 C -0.374 4.374 8 H 0.078 0.922 9 N -0.319 5.319 10 C 0.045 3.955 11 C -0.135 4.135 12 C -0.076 4.076 13 C -0.152 4.152 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.145 4.145 17 C -0.103 4.103 18 C 0.094 3.906 19 H 0.056 0.944 20 C 0.027 3.973 21 N -0.343 5.343 22 C 0.295 3.705 23 O -0.471 6.471 24 C -0.102 4.102 25 C -0.123 4.123 26 C -0.181 4.181 27 N -0.254 5.254 28 C -0.095 4.095 29 N -0.164 5.164 30 H 0.269 0.731 31 H 0.061 0.939 32 H 0.028 0.972 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.147 0.853 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.252 0.748 43 H 0.127 0.873 44 H 0.161 0.839 45 H 0.189 0.811 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 5.169 -5.567 2.497 7.997 hybrid contribution -0.811 1.890 -1.240 2.401 sum 4.359 -3.677 1.257 5.839 Atomic orbital electron populations 1.70070 1.06317 1.25896 1.54090 1.25712 0.95640 1.00358 1.00448 0.85742 0.77954 0.80652 0.78450 1.22177 1.22353 1.18545 1.19087 0.90910 0.84000 1.43432 0.92187 1.44081 1.40169 1.04656 1.43024 1.20624 0.88850 0.97609 0.88400 1.20977 0.99848 0.93743 0.98944 1.19752 0.98517 0.95810 0.93530 1.21424 1.00932 0.92928 0.99883 1.21354 0.98378 0.97882 0.96531 1.21345 1.00279 0.98861 0.94189 1.21311 0.99911 0.92563 1.00750 1.20137 0.99519 0.95665 0.94990 1.19540 0.93784 0.85869 0.91432 0.94412 1.21121 0.96370 0.89351 0.90500 1.46023 1.12408 1.35948 1.39933 1.20835 0.83187 0.84639 0.81842 1.90664 1.30951 1.57548 1.67887 1.20069 0.93187 0.98197 0.98752 1.20645 0.93996 0.97626 1.00061 1.22211 0.92837 1.03293 0.99753 1.70220 1.16316 1.12197 1.26656 1.25665 0.94169 0.99577 0.90068 1.43278 1.13937 1.30838 1.28390 0.73147 0.93946 0.97246 0.91781 0.90248 0.92433 0.84873 0.83472 0.83604 0.85345 0.91030 0.94377 0.74767 0.87282 0.83946 0.81083 0.73857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.69 11.42 21.65 0.25 -47.45 16 2 C -0.02 -1.16 5.04 84.86 0.43 -0.73 16 3 Si 0.94 39.51 29.57 68.60 2.03 41.54 16 4 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.30 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.24 -11.53 6.91 84.03 0.58 -10.95 16 8 H 0.06 2.92 5.99 -2.91 -0.02 2.90 16 9 N -0.60 -26.56 2.90 -680.12 -1.97 -28.53 16 10 C 0.17 7.53 5.57 86.17 0.48 8.01 16 11 C -0.10 -3.53 5.87 29.75 0.17 -3.35 16 12 C -0.08 -2.62 5.76 -19.85 -0.11 -2.73 16 13 C -0.13 -3.75 9.59 22.37 0.21 -3.54 16 14 C -0.12 -2.97 10.04 22.20 0.22 -2.74 16 15 C -0.13 -3.18 10.05 22.21 0.22 -2.95 16 16 C -0.13 -3.74 9.05 22.34 0.20 -3.54 16 17 C -0.10 -3.56 5.44 -19.82 -0.11 -3.67 16 18 C 0.20 7.69 3.04 44.25 0.13 7.83 16 19 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 20 C 0.15 5.57 4.13 86.38 0.36 5.93 16 21 N -0.69 -24.34 3.61 -463.06 -1.67 -26.00 16 22 C 0.51 17.50 7.82 87.66 0.69 18.18 16 23 O -0.59 -24.56 16.03 -3.03 -0.05 -24.61 16 24 C -0.06 -1.63 6.26 29.10 0.18 -1.45 16 25 C -0.01 -0.19 5.73 40.95 0.23 0.05 16 26 C -0.03 -1.01 11.79 83.52 0.98 -0.02 16 27 N -0.53 -16.20 11.25 -200.31 -2.25 -18.46 16 28 C 0.19 4.41 13.04 180.26 2.35 6.76 16 29 N -0.56 -13.43 6.15 -186.50 -1.15 -14.57 16 30 H 0.43 8.14 8.96 -92.71 -0.83 7.31 16 31 H 0.25 12.87 8.31 -92.71 -0.77 12.10 16 32 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 3.18 6.16 -2.39 -0.01 3.17 16 34 H 0.08 2.50 8.11 -2.39 -0.02 2.49 16 35 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.13 3.13 8.05 -2.91 -0.02 3.10 16 37 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.13 3.40 6.68 -2.91 -0.02 3.38 16 40 H 0.07 2.42 6.58 -2.39 -0.02 2.40 16 41 H 0.04 1.62 7.77 -2.38 -0.02 1.60 16 42 H 0.41 14.82 7.30 -92.70 -0.68 14.14 16 43 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.14 2.93 8.14 -2.39 -0.02 2.92 16 45 H 0.17 4.61 8.06 -2.91 -0.02 4.59 16 46 H 0.25 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -66.96 374.24 1.94 -65.02 By element: Atomic # 1 Polarization: 42.44 SS G_CDS: -0.48 Total: 41.97 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 7.23 Total: 11.09 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -6.79 Total: -135.01 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.05 Total: -24.61 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -66.96 1.94 -65.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755171379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.173 kcal (2) G-P(sol) polarization free energy of solvation -66.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds