Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.47251 * 270.00335 * 3 2 1 5 5 H 1.48499 * 109.47195 * 30.00576 * 3 2 1 6 6 H 1.48498 * 109.46941 * 150.00504 * 3 2 1 7 7 C 1.38814 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99953 * 189.08919 * 7 2 1 9 9 N 1.36934 * 120.00058 * 9.09152 * 7 2 1 10 10 C 1.48015 * 127.84289 * 15.64530 * 9 7 2 11 11 C 1.54380 * 104.65120 * 140.40772 * 10 9 7 12 12 H 1.09006 * 118.18631 * 244.23323 * 11 10 9 13 13 C 1.52998 * 118.12398 * 87.21689 * 11 10 9 14 14 H 1.08996 * 117.44566 * 16.06892 * 13 11 10 15 15 C 1.53008 * 117.44106 * 160.81072 * 13 11 10 16 16 N 1.46500 * 109.46702 * 185.16869 * 15 13 11 17 17 C 1.34784 * 119.99722 * 179.97438 * 16 15 13 18 18 O 1.21279 * 119.99795 * 359.97438 * 17 16 15 19 19 C 1.50698 * 119.99897 * 180.02562 * 17 16 15 20 20 N 1.46495 * 109.47276 * 179.97438 * 19 17 16 21 21 N 1.39869 * 125.46284 * 269.97727 * 20 19 17 22 22 C 1.30239 * 110.08955 * 180.02562 * 21 20 19 23 23 C 1.45927 * 107.78286 * 0.02562 * 22 21 20 24 24 C 1.39949 * 134.03235 * 179.97438 * 23 22 21 25 25 C 1.36466 * 119.63719 * 180.02562 * 24 23 22 26 26 C 1.38969 * 120.62863 * 0.02562 * 25 24 23 27 27 C 1.36590 * 120.81431 * 0.02562 * 26 25 24 28 28 C 1.37039 * 125.46340 * 89.99712 * 20 19 17 29 29 C 1.52993 * 60.49866 * 268.43902 * 13 11 10 30 30 H 1.08999 * 119.54078 * 248.25657 * 29 13 11 31 31 C 1.48152 * 127.84085 * 195.58758 * 9 7 2 32 32 H 0.97002 * 120.00447 * 359.97438 * 1 2 3 33 33 H 1.08999 * 110.36680 * 21.62145 * 10 9 7 34 34 H 1.08999 * 110.41436 * 259.21494 * 10 9 7 35 35 H 1.08992 * 109.46896 * 65.17139 * 15 13 11 36 36 H 1.09001 * 109.47087 * 305.16545 * 15 13 11 37 37 H 0.96999 * 120.00390 * 0.02562 * 16 15 13 38 38 H 1.09007 * 109.47181 * 59.99821 * 19 17 16 39 39 H 1.08998 * 109.47327 * 300.00260 * 19 17 16 40 40 H 1.08000 * 126.11520 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.18181 * 0.02562 * 24 23 22 42 42 H 1.07996 * 119.68410 * 180.28056 * 25 24 23 43 43 H 1.08000 * 119.59108 * 180.02562 * 26 25 24 44 44 H 1.07997 * 120.07496 * 179.97438 * 27 26 25 45 45 H 1.09001 * 110.40740 * 100.79984 * 31 9 7 46 46 H 1.09000 * 110.40322 * 338.36545 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0801 -1.2081 0.1472 9 7 1.3385 -2.3805 -0.1884 10 6 -0.0325 -2.5706 -0.7130 11 6 0.0654 -3.8165 -1.6194 12 1 -0.1203 -3.6928 -2.6863 13 6 -0.1184 -5.1925 -0.9762 14 1 -0.5686 -5.2272 0.0158 15 6 -0.4674 -6.3615 -1.8996 16 7 -0.7232 -7.5592 -1.0957 17 6 -1.0518 -8.7186 -1.6995 18 8 -1.1361 -8.7701 -2.9082 19 6 -1.3155 -9.9505 -0.8725 20 7 -1.6507 -11.0695 -1.7565 21 7 -2.9390 -11.4103 -2.1813 22 6 -2.8923 -12.4545 -2.9583 23 6 -1.4954 -12.8591 -3.0775 24 6 -0.8352 -13.8868 -3.7607 25 6 0.5215 -13.9980 -3.6648 26 6 1.2528 -13.1013 -2.8952 27 6 0.6310 -12.0908 -2.2184 28 6 -0.7524 -11.9505 -2.2996 29 6 1.2860 -4.5969 -1.0928 30 1 2.0096 -5.0545 -1.7674 31 6 1.8195 -3.7546 0.0860 32 1 -0.4851 0.8400 0.0004 33 1 -0.3403 -1.7012 -1.2939 34 1 -0.7309 -2.7492 0.1045 35 1 0.3649 -6.5499 -2.5776 36 1 -1.3581 -6.1147 -2.4774 37 1 -0.6569 -7.5177 -0.1289 38 1 -2.1478 -9.7616 -0.1944 39 1 -0.4250 -10.1976 -0.2946 40 1 -3.7366 -12.9351 -3.4301 41 1 -1.3965 -14.5879 -4.3605 42 1 1.0321 -14.7880 -4.1953 43 1 2.3259 -13.2047 -2.8314 44 1 1.2110 -11.4008 -1.6235 45 1 1.4114 -4.1190 1.0288 46 1 2.9090 -3.7786 0.1079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755430707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = 121.439761 kcal Electronic energy + Delta-G solvation = -27671.583102 eV Core-core repulsion = 23757.655442 eV Total energy + Delta-G solvation = -3913.927659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.59305 -39.83991 -38.78302 -37.43361 -35.10460 -33.85865 -33.38071 -31.13719 -30.70431 -30.10264 -28.32663 -27.18625 -26.61311 -24.74605 -23.34679 -22.29306 -21.66308 -21.20138 -20.63526 -19.81331 -19.30723 -17.74985 -17.50546 -17.20490 -16.84752 -16.00752 -15.69462 -15.48275 -15.15752 -14.80075 -14.53603 -14.35223 -14.27808 -13.86137 -13.75489 -13.62017 -13.30649 -12.91095 -12.73482 -12.48179 -12.19753 -12.13870 -11.89878 -11.37375 -11.30264 -11.15056 -11.06179 -10.87349 -10.70167 -10.67067 -10.35371 -10.16319 -10.05574 -9.78249 -9.50377 -9.20632 -9.04161 -8.95424 -8.67798 -8.18933 -6.91093 -5.83523 -3.18174 0.66911 1.21838 1.90208 2.25303 2.33976 2.99998 3.35844 3.41146 3.42991 3.53160 4.05885 4.09779 4.22487 4.41465 4.44592 4.46363 4.64451 4.67225 4.82563 4.85092 4.96309 5.06000 5.23540 5.33101 5.33656 5.39690 5.44582 5.49056 5.66881 5.72907 5.82258 5.84891 5.91135 6.04777 6.17904 6.18753 6.21992 6.22423 6.48521 6.50289 6.60345 6.65037 6.69121 6.86482 7.26745 7.31643 7.33947 7.49121 7.68068 7.96541 8.17241 9.07349 9.70026 10.46708 11.30742 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030923 B = 0.001712 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.259738 B =16347.039060 C =16866.290228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.184 3.816 11 C -0.161 4.161 12 H 0.103 0.897 13 C -0.150 4.150 14 H 0.104 0.896 15 C 0.156 3.844 16 N -0.720 5.720 17 C 0.491 3.509 18 O -0.524 6.524 19 C 0.123 3.877 20 N -0.390 5.390 21 N -0.242 5.242 22 C 0.074 3.926 23 C -0.181 4.181 24 C -0.040 4.040 25 C -0.163 4.163 26 C -0.070 4.070 27 C -0.139 4.139 28 C 0.139 3.861 29 C -0.171 4.171 30 H 0.102 0.898 31 C 0.154 3.846 32 H 0.255 0.745 33 H 0.090 0.910 34 H 0.024 0.976 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.403 0.597 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.197 0.803 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.024 0.976 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 -28.976 -3.062 29.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.317 5.317 10 C 0.058 3.942 11 C -0.182 4.182 12 H 0.121 0.879 13 C -0.170 4.170 14 H 0.122 0.878 15 C 0.033 3.967 16 N -0.373 5.373 17 C 0.274 3.726 18 O -0.399 6.399 19 C -0.003 4.003 20 N -0.178 5.178 21 N -0.052 5.052 22 C -0.124 4.124 23 C -0.188 4.188 24 C -0.060 4.060 25 C -0.182 4.182 26 C -0.090 4.090 27 C -0.161 4.161 28 C 0.025 3.975 29 C -0.191 4.191 30 H 0.120 0.880 31 C 0.028 3.972 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.238 0.762 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.214 0.786 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.042 0.958 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.988 -27.671 -3.234 28.019 hybrid contribution 0.976 0.486 0.047 1.091 sum -2.013 -27.185 -3.188 27.445 Atomic orbital electron populations 1.69891 1.05072 1.25483 1.55705 1.24906 0.95658 0.98019 1.01688 0.86103 0.78685 0.83193 0.77673 1.21470 1.21624 1.20529 1.19002 0.90819 0.82360 1.43454 0.90551 1.45174 1.13383 1.00006 1.73185 1.21044 0.86881 0.92734 0.93551 1.24227 1.02087 0.91703 1.00135 0.87898 1.22520 1.00416 0.93783 1.00235 0.87837 1.20894 1.01117 0.82008 0.92696 1.45982 1.70661 1.09650 1.10968 1.20908 0.77633 0.84840 0.89222 1.90771 1.50250 1.84757 1.14134 1.21371 1.04537 0.83357 0.91035 1.47597 1.02435 1.24692 1.43039 1.76609 1.00298 1.14551 1.13776 1.25084 0.95843 0.94028 0.97431 1.19909 0.93065 1.00549 1.05321 1.20346 0.94203 0.95288 0.96183 1.20667 0.93903 1.01251 1.02405 1.20727 0.99972 0.93414 0.94932 1.19837 0.90208 1.01357 1.04689 1.18776 0.92164 0.91131 0.95447 1.23982 0.89792 1.02608 1.02730 0.87951 1.21140 0.97152 0.86028 0.92905 0.93515 0.89164 0.95852 0.91382 0.91066 0.76225 0.85716 0.86181 0.78591 0.85453 0.85645 0.85356 0.85955 0.95837 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 10.87 55.49 0.60 -25.97 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.78 29.56 -169.99 -5.03 16.75 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.23 -6.30 10.35 -15.06 -0.16 -6.45 16 8 H 0.08 2.04 7.85 -52.48 -0.41 1.62 16 9 N -0.59 -14.99 3.38 -168.97 -0.57 -15.56 16 10 C 0.18 4.33 5.69 -2.49 -0.01 4.32 16 11 C -0.16 -2.97 6.85 -89.30 -0.61 -3.59 16 12 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 13 C -0.15 -2.20 5.40 -90.62 -0.49 -2.69 16 14 H 0.10 1.48 8.04 -51.93 -0.42 1.06 16 15 C 0.16 2.04 5.95 -4.04 -0.02 2.02 16 16 N -0.72 -7.56 5.56 -60.29 -0.33 -7.89 16 17 C 0.49 5.90 7.90 -10.98 -0.09 5.81 16 18 O -0.52 -8.90 16.43 5.56 0.09 -8.81 16 19 C 0.12 1.07 6.85 -5.20 -0.04 1.04 16 20 N -0.39 -4.55 3.14 -59.88 -0.19 -4.74 16 21 N -0.24 -2.97 12.40 31.87 0.40 -2.58 16 22 C 0.07 0.73 12.28 -15.15 -0.19 0.55 16 23 C -0.18 -1.88 6.37 -105.21 -0.67 -2.55 16 24 C -0.04 -0.32 10.07 -39.58 -0.40 -0.72 16 25 C -0.16 -1.21 9.97 -39.95 -0.40 -1.61 16 26 C -0.07 -0.55 9.96 -39.91 -0.40 -0.95 16 27 C -0.14 -1.32 9.97 -39.78 -0.40 -1.72 16 28 C 0.14 1.58 6.87 -84.17 -0.58 1.00 16 29 C -0.17 -2.91 6.74 -89.30 -0.60 -3.51 16 30 H 0.10 1.62 8.12 -51.93 -0.42 1.20 16 31 C 0.15 3.12 7.04 -2.41 -0.02 3.10 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.09 2.40 6.51 -51.93 -0.34 2.06 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.40 3.03 8.40 -40.82 -0.34 2.69 16 38 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.20 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -36.05 388.73 -10.88 -46.92 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.55 Total: 2.22 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -5.15 Total: -6.20 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.10 Total: -56.75 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.05 -10.88 -46.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755430707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.364 kcal (2) G-P(sol) polarization free energy of solvation -36.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds