Wall clock time and date at job start Sat Apr 11 2020 06:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.47251 * 270.00335 * 3 2 1 5 5 H 1.48499 * 109.47195 * 30.00576 * 3 2 1 6 6 H 1.48498 * 109.46941 * 150.00504 * 3 2 1 7 7 C 1.38814 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99953 * 189.08919 * 7 2 1 9 9 N 1.36934 * 120.00058 * 9.09152 * 7 2 1 10 10 C 1.48015 * 127.84289 * 15.64530 * 9 7 2 11 11 C 1.54380 * 104.65120 * 140.40772 * 10 9 7 12 12 H 1.09006 * 118.18631 * 244.23323 * 11 10 9 13 13 C 1.52998 * 118.12398 * 87.21689 * 11 10 9 14 14 H 1.08996 * 117.44566 * 16.06892 * 13 11 10 15 15 C 1.53008 * 117.44106 * 160.81072 * 13 11 10 16 16 N 1.46500 * 109.46702 * 185.16869 * 15 13 11 17 17 C 1.34784 * 119.99722 * 179.97438 * 16 15 13 18 18 O 1.21279 * 119.99795 * 359.97438 * 17 16 15 19 19 C 1.50698 * 119.99897 * 180.02562 * 17 16 15 20 20 N 1.46495 * 109.47276 * 179.97438 * 19 17 16 21 21 N 1.39869 * 125.46284 * 269.97727 * 20 19 17 22 22 C 1.30239 * 110.08955 * 180.02562 * 21 20 19 23 23 C 1.45927 * 107.78286 * 0.02562 * 22 21 20 24 24 C 1.39949 * 134.03235 * 179.97438 * 23 22 21 25 25 C 1.36466 * 119.63719 * 180.02562 * 24 23 22 26 26 C 1.38969 * 120.62863 * 0.02562 * 25 24 23 27 27 C 1.36590 * 120.81431 * 0.02562 * 26 25 24 28 28 C 1.37039 * 125.46340 * 89.99712 * 20 19 17 29 29 C 1.52993 * 60.49866 * 268.43902 * 13 11 10 30 30 H 1.08999 * 119.54078 * 248.25657 * 29 13 11 31 31 C 1.48152 * 127.84085 * 195.58758 * 9 7 2 32 32 H 0.97002 * 120.00447 * 359.97438 * 1 2 3 33 33 H 1.08999 * 110.36680 * 21.62145 * 10 9 7 34 34 H 1.08999 * 110.41436 * 259.21494 * 10 9 7 35 35 H 1.08992 * 109.46896 * 65.17139 * 15 13 11 36 36 H 1.09001 * 109.47087 * 305.16545 * 15 13 11 37 37 H 0.96999 * 120.00390 * 0.02562 * 16 15 13 38 38 H 1.09007 * 109.47181 * 59.99821 * 19 17 16 39 39 H 1.08998 * 109.47327 * 300.00260 * 19 17 16 40 40 H 1.08000 * 126.11520 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.18181 * 0.02562 * 24 23 22 42 42 H 1.07996 * 119.68410 * 180.28056 * 25 24 23 43 43 H 1.08000 * 119.59108 * 180.02562 * 26 25 24 44 44 H 1.07997 * 120.07496 * 179.97438 * 27 26 25 45 45 H 1.09001 * 110.40740 * 100.79984 * 31 9 7 46 46 H 1.09000 * 110.40322 * 338.36545 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0801 -1.2081 0.1472 9 7 1.3385 -2.3805 -0.1884 10 6 -0.0325 -2.5706 -0.7130 11 6 0.0654 -3.8165 -1.6194 12 1 -0.1203 -3.6928 -2.6863 13 6 -0.1184 -5.1925 -0.9762 14 1 -0.5686 -5.2272 0.0158 15 6 -0.4674 -6.3615 -1.8996 16 7 -0.7232 -7.5592 -1.0957 17 6 -1.0518 -8.7186 -1.6995 18 8 -1.1361 -8.7701 -2.9082 19 6 -1.3155 -9.9505 -0.8725 20 7 -1.6507 -11.0695 -1.7565 21 7 -2.9390 -11.4103 -2.1813 22 6 -2.8923 -12.4545 -2.9583 23 6 -1.4954 -12.8591 -3.0775 24 6 -0.8352 -13.8868 -3.7607 25 6 0.5215 -13.9980 -3.6648 26 6 1.2528 -13.1013 -2.8952 27 6 0.6310 -12.0908 -2.2184 28 6 -0.7524 -11.9505 -2.2996 29 6 1.2860 -4.5969 -1.0928 30 1 2.0096 -5.0545 -1.7674 31 6 1.8195 -3.7546 0.0860 32 1 -0.4851 0.8400 0.0004 33 1 -0.3403 -1.7012 -1.2939 34 1 -0.7309 -2.7492 0.1045 35 1 0.3649 -6.5499 -2.5776 36 1 -1.3581 -6.1147 -2.4774 37 1 -0.6569 -7.5177 -0.1289 38 1 -2.1478 -9.7616 -0.1944 39 1 -0.4250 -10.1976 -0.2946 40 1 -3.7366 -12.9351 -3.4301 41 1 -1.3965 -14.5879 -4.3605 42 1 1.0321 -14.7880 -4.1953 43 1 2.3259 -13.2047 -2.8314 44 1 1.2110 -11.4008 -1.6235 45 1 1.4114 -4.1190 1.0288 46 1 2.9090 -3.7786 0.1079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755430707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:29 Heat of formation + Delta-G solvation = 98.362212 kcal Electronic energy + Delta-G solvation = -27672.583819 eV Core-core repulsion = 23757.655442 eV Total energy + Delta-G solvation = -3914.928377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.27484 -40.92932 -40.18323 -38.05822 -36.41713 -35.06124 -34.53887 -32.77836 -31.52929 -30.75676 -29.44132 -28.88540 -27.89115 -26.26449 -23.97712 -23.08761 -22.86328 -22.34387 -21.78396 -20.96117 -20.83706 -18.87454 -18.54901 -18.27529 -17.84823 -17.07765 -16.69121 -16.60872 -16.13568 -16.08190 -15.67569 -15.41645 -15.24393 -14.92159 -14.74421 -14.61431 -14.48477 -14.34024 -14.25185 -13.41690 -13.28188 -13.19790 -12.89516 -12.81001 -12.75194 -12.73214 -12.33192 -12.00286 -11.96133 -11.94785 -11.78840 -11.75936 -11.54553 -11.02182 -10.86433 -10.73135 -10.56960 -10.14544 -9.62302 -8.92291 -8.85312 -7.93362 -5.29626 0.03302 0.57921 1.24064 1.44143 1.45176 1.47146 1.55801 1.56942 2.10611 2.46133 2.70005 2.91085 3.24376 3.46765 3.57428 3.62430 3.64938 3.70856 3.82587 3.85281 4.09678 4.13929 4.16227 4.24825 4.26051 4.39698 4.41338 4.51511 4.53549 4.60267 4.67997 4.73881 4.92277 4.96748 5.01504 5.08475 5.14611 5.32043 5.38262 5.43791 5.45711 5.51383 5.57944 5.63942 5.64681 5.87822 6.07704 6.16771 6.44441 6.63094 6.99800 7.10376 7.67190 8.45097 9.20323 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030923 B = 0.001712 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.259738 B =16347.039060 C =16866.290228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.979 3.021 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.621 5.621 10 C 0.189 3.811 11 C -0.180 4.180 12 H 0.109 0.891 13 C -0.106 4.106 14 H 0.114 0.886 15 C 0.166 3.834 16 N -0.706 5.706 17 C 0.493 3.507 18 O -0.578 6.578 19 C 0.123 3.877 20 N -0.403 5.403 21 N -0.282 5.282 22 C 0.076 3.924 23 C -0.206 4.206 24 C -0.044 4.044 25 C -0.166 4.166 26 C -0.070 4.070 27 C -0.159 4.159 28 C 0.113 3.887 29 C -0.158 4.158 30 H 0.123 0.877 31 C 0.149 3.851 32 H 0.249 0.751 33 H 0.050 0.950 34 H 0.004 0.996 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.421 0.579 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.229 0.771 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.133 0.867 45 H 0.031 0.969 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 -31.544 -2.996 31.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.369 4.369 8 H 0.099 0.901 9 N -0.345 5.345 10 C 0.064 3.936 11 C -0.200 4.200 12 H 0.127 0.873 13 C -0.125 4.125 14 H 0.132 0.868 15 C 0.042 3.958 16 N -0.360 5.360 17 C 0.278 3.722 18 O -0.457 6.457 19 C -0.002 4.002 20 N -0.191 5.191 21 N -0.093 5.093 22 C -0.122 4.122 23 C -0.213 4.213 24 C -0.064 4.064 25 C -0.186 4.186 26 C -0.090 4.090 27 C -0.181 4.181 28 C -0.001 4.001 29 C -0.178 4.178 30 H 0.141 0.859 31 C 0.024 3.976 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.022 0.978 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.259 0.741 38 H 0.164 0.836 39 H 0.173 0.827 40 H 0.245 0.755 41 H 0.171 0.829 42 H 0.171 0.829 43 H 0.171 0.829 44 H 0.151 0.849 45 H 0.049 0.951 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.629 -30.274 -3.123 30.478 hybrid contribution 0.595 1.180 0.011 1.322 sum -1.034 -29.093 -3.112 29.277 Atomic orbital electron populations 1.70087 1.06517 1.25725 1.57187 1.25745 0.96509 1.01320 1.02162 0.85067 0.77827 0.78893 0.77475 1.21389 1.22036 1.19050 1.19387 0.91355 0.83680 1.42495 0.90106 1.45498 1.13896 1.01308 1.73814 1.20761 0.86119 0.93607 0.93137 1.23903 1.04896 0.91515 0.99736 0.87300 1.22393 0.98039 0.91767 1.00329 0.86777 1.20625 1.00616 0.82259 0.92348 1.45795 1.69893 1.08550 1.11721 1.21507 0.76199 0.85711 0.88762 1.90748 1.52706 1.85619 1.16627 1.21625 1.06898 0.81286 0.90397 1.47782 1.02271 1.25319 1.43747 1.76524 1.01367 1.16005 1.15445 1.25698 0.96870 0.93240 0.96345 1.20307 0.93397 1.01497 1.06147 1.20730 0.94822 0.95017 0.95822 1.21077 0.93867 1.01623 1.02006 1.21135 1.01359 0.92627 0.93917 1.20114 0.89765 1.02449 1.05735 1.19211 0.93053 0.91672 0.96156 1.23905 0.90484 1.02096 1.01270 0.85934 1.21305 0.97741 0.84161 0.94395 0.94143 0.93104 0.97820 0.91657 0.91960 0.74137 0.83596 0.82749 0.75510 0.82870 0.82942 0.82898 0.84938 0.95103 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.92 10.87 21.65 0.24 -56.68 16 2 C -0.06 -3.61 5.40 84.86 0.46 -3.15 16 3 Si 0.98 45.42 29.56 68.60 2.03 47.44 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.24 -13.41 10.35 84.03 0.87 -12.54 16 8 H 0.08 4.30 7.85 -2.91 -0.02 4.28 16 9 N -0.62 -31.68 3.38 -688.50 -2.32 -34.00 16 10 C 0.19 9.20 5.69 86.56 0.49 9.69 16 11 C -0.18 -6.58 6.85 -9.94 -0.07 -6.65 16 12 H 0.11 3.85 8.14 -2.38 -0.02 3.83 16 13 C -0.11 -2.89 5.40 -10.79 -0.06 -2.95 16 14 H 0.11 2.95 8.04 -2.39 -0.02 2.93 16 15 C 0.17 4.01 5.95 86.38 0.51 4.52 16 16 N -0.71 -13.19 5.56 -463.05 -2.57 -15.76 16 17 C 0.49 11.17 7.90 87.66 0.69 11.86 16 18 O -0.58 -19.52 16.43 -3.03 -0.05 -19.57 16 19 C 0.12 1.93 6.85 85.63 0.59 2.52 16 20 N -0.40 -9.12 3.14 -343.37 -1.08 -10.20 16 21 N -0.28 -6.89 12.40 -53.09 -0.66 -7.55 16 22 C 0.08 1.46 12.28 86.92 1.07 2.52 16 23 C -0.21 -4.10 6.37 -20.24 -0.13 -4.23 16 24 C -0.04 -0.62 10.07 22.27 0.22 -0.40 16 25 C -0.17 -2.05 9.97 22.03 0.22 -1.83 16 26 C -0.07 -0.95 9.96 22.06 0.22 -0.73 16 27 C -0.16 -2.80 9.97 22.14 0.22 -2.58 16 28 C 0.11 2.48 6.87 39.21 0.27 2.75 16 29 C -0.16 -5.06 6.74 -9.94 -0.07 -5.13 16 30 H 0.12 3.51 8.12 -2.39 -0.02 3.49 16 31 C 0.15 5.86 7.04 86.53 0.61 6.47 16 32 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.05 2.84 6.51 -2.39 -0.02 2.83 16 34 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.07 1.69 7.94 -2.39 -0.02 1.67 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.42 4.97 8.40 -92.71 -0.78 4.19 16 38 H 0.15 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.23 2.31 8.06 -2.91 -0.02 2.28 16 41 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 42 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 43 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 44 H 0.13 1.88 8.06 -2.91 -0.02 1.85 16 45 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -81.99 388.73 1.92 -80.06 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.22 Total: 16.10 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 6.12 Total: 0.15 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -6.40 Total: -124.20 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.05 Total: -19.57 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -81.99 1.92 -80.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755430707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.427 kcal (2) G-P(sol) polarization free energy of solvation -81.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds