Wall clock time and date at job start Sat Apr 11 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00471 * 2 1 4 4 H 1.48500 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46753 * 299.99932 * 3 2 1 6 6 H 1.48494 * 109.47002 * 59.99877 * 3 2 1 7 7 C 1.38824 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99649 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00264 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47513 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47372 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47251 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.47242 * 55.00305 * 13 12 11 15 15 N 1.46493 * 109.47282 * 295.00056 * 13 12 11 16 16 C 1.34777 * 120.00267 * 154.99750 * 15 13 12 17 17 O 1.21516 * 119.99863 * 0.02562 * 16 15 13 18 18 C 1.48135 * 120.00219 * 180.02562 * 16 15 13 19 19 C 1.40111 * 121.14674 * 179.72290 * 18 16 15 20 20 C 1.38497 * 117.82507 * 179.73989 * 19 18 16 21 21 N 1.31916 * 119.96650 * 0.54077 * 20 19 18 22 22 N 1.28278 * 122.51937 * 359.71812 * 21 20 19 23 23 C 1.31922 * 122.32347 * 0.02562 * 22 21 20 24 24 C 1.50702 * 109.47066 * 174.99706 * 13 12 11 25 25 C 1.38234 * 120.00271 * 259.99910 * 24 13 12 26 26 C 1.38230 * 119.99880 * 179.97438 * 25 24 13 27 27 C 1.38235 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99485 * 79.98038 * 24 13 12 30 30 H 0.97002 * 119.99486 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99877 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47109 * 59.99747 * 10 9 7 33 33 H 1.09000 * 109.47278 * 299.99875 * 10 9 7 34 34 H 1.09006 * 109.46916 * 59.99734 * 11 10 9 35 35 H 1.09006 * 109.47184 * 300.00323 * 11 10 9 36 36 H 1.08997 * 109.47102 * 59.99884 * 12 11 10 37 37 H 1.09000 * 109.47426 * 299.99926 * 12 11 10 38 38 H 0.97004 * 119.99906 * 335.00687 * 15 13 12 39 39 H 1.08006 * 121.08192 * 359.97438 * 19 18 16 40 40 H 1.08002 * 120.01591 * 180.23547 * 20 19 18 41 41 H 1.08001 * 120.17402 * 179.97438 * 23 22 21 42 42 H 1.08001 * 119.99769 * 359.97438 * 25 24 13 43 43 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 45 45 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 46 46 H 1.07997 * 120.00489 * 0.02562 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8285 -6.1447 0.0005 13 6 0.8342 -7.3077 0.0018 14 1 0.1492 -7.2010 -0.8393 15 7 0.0746 -7.2993 1.2544 16 6 -1.1501 -7.8599 1.3036 17 8 -1.6240 -8.3726 0.3091 18 6 -1.9184 -7.8509 2.5701 19 6 -3.1958 -8.4215 2.6468 20 6 -3.8503 -8.3796 3.8667 21 7 -3.2732 -7.8056 4.9048 22 7 -2.1063 -7.2767 4.8399 23 6 -1.3968 -7.2676 3.7278 24 6 1.5835 -8.6093 -0.1227 25 6 1.6678 -9.2438 -1.3479 26 6 2.3555 -10.4375 -1.4622 27 6 2.9593 -10.9964 -0.3514 28 6 2.8759 -10.3614 0.8736 29 6 2.1867 -9.1685 0.9883 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6845 -3.7146 0.8905 33 1 2.6845 -3.7147 -0.8894 34 1 0.4366 -4.7621 -0.8886 35 1 0.4373 -4.7618 0.8914 36 1 2.4558 -6.2026 0.8900 37 1 2.4546 -6.2025 -0.8899 38 1 0.4530 -6.8902 2.0484 39 1 -3.6533 -8.8824 1.7839 40 1 -4.8349 -8.8122 3.9666 41 1 -0.4177 -6.8120 3.7122 42 1 1.1964 -8.8069 -2.2159 43 1 2.4218 -10.9331 -2.4195 44 1 3.4929 -11.9313 -0.4397 45 1 3.3472 -10.7982 1.7416 46 1 2.1207 -8.6729 1.9455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755548334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:50 Heat of formation + Delta-G solvation = 54.933896 kcal Electronic energy + Delta-G solvation = -28206.426726 eV Core-core repulsion = 24289.615156 eV Total energy + Delta-G solvation = -3916.811570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57084 -40.31678 -39.01275 -36.67384 -34.94823 -33.78143 -33.19111 -32.45859 -31.53992 -31.04960 -30.17160 -27.33897 -25.76115 -24.91469 -24.15926 -22.89370 -22.41202 -21.63471 -20.88509 -20.68144 -18.65460 -18.04487 -17.24524 -16.97515 -16.76664 -16.32507 -15.79164 -15.55622 -15.39306 -14.86221 -14.77559 -14.60249 -14.52399 -13.95654 -13.82292 -13.70623 -13.59342 -13.34687 -13.07862 -12.98153 -12.31696 -11.92678 -11.76296 -11.37722 -11.31144 -11.21730 -10.92282 -10.88224 -10.79030 -10.62372 -10.60155 -10.52707 -10.49445 -10.03636 -9.99295 -9.74741 -9.47834 -9.10816 -8.91207 -8.89347 -6.94108 -5.78153 -3.07055 -0.05642 0.46570 1.11638 1.21020 2.42696 2.63200 3.26991 3.42371 3.47773 3.50252 3.57934 3.66351 3.89955 4.11764 4.18749 4.41420 4.43855 4.59860 4.64089 4.76547 4.83898 4.88659 4.91521 5.03784 5.21103 5.25560 5.29803 5.37328 5.38240 5.51847 5.58014 5.67300 5.74708 5.76550 5.82570 5.91540 6.08033 6.10602 6.22891 6.27947 6.30706 6.33913 6.43398 6.78454 6.79823 6.83036 7.05363 7.68822 7.74279 8.24636 8.40743 9.51835 10.09993 10.44023 11.44829 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007482 B = 0.003043 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3741.339710 B = 9199.909379 C =12117.889138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.153 3.847 11 C -0.126 4.126 12 C -0.118 4.118 13 C 0.187 3.813 14 H 0.102 0.898 15 N -0.708 5.708 16 C 0.566 3.434 17 O -0.520 6.520 18 C -0.130 4.130 19 C -0.058 4.058 20 C 0.038 3.962 21 N -0.227 5.227 22 N -0.239 5.239 23 C 0.072 3.928 24 C -0.091 4.091 25 C -0.103 4.103 26 C -0.119 4.119 27 C -0.123 4.123 28 C -0.122 4.122 29 C -0.107 4.107 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.017 0.983 33 H 0.018 0.982 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.403 0.597 39 H 0.164 0.836 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 -25.679 3.103 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.379 5.379 10 C 0.026 3.974 11 C -0.164 4.164 12 C -0.156 4.156 13 C 0.083 3.917 14 H 0.120 0.880 15 N -0.360 5.360 16 C 0.351 3.649 17 O -0.395 6.395 18 C -0.145 4.145 19 C -0.088 4.088 20 C -0.126 4.126 21 N -0.070 5.070 22 N -0.080 5.080 23 C -0.093 4.093 24 C -0.092 4.092 25 C -0.121 4.121 26 C -0.138 4.138 27 C -0.141 4.141 28 C -0.140 4.140 29 C -0.125 4.125 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.239 0.761 39 H 0.181 0.819 40 H 0.198 0.802 41 H 0.192 0.808 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.663 -25.479 3.980 25.797 hybrid contribution 0.434 0.745 -1.177 1.459 sum -0.229 -24.735 2.803 24.894 Atomic orbital electron populations 1.69669 1.05140 1.25562 1.57822 1.24757 0.95532 0.97747 1.03016 0.86118 0.78786 0.84089 0.77219 1.20528 1.21847 1.21826 1.19279 0.91056 0.84187 1.42605 0.91139 1.42374 1.05874 1.00094 1.89519 1.20626 0.93456 0.85574 0.97761 1.21757 0.98909 0.93342 1.02395 1.21855 0.97265 0.92690 1.03821 1.20033 0.92725 0.91916 0.87060 0.87968 1.45926 1.16958 1.58804 1.14293 1.17860 0.81320 0.78615 0.87121 1.90805 1.69086 1.44247 1.35376 1.21251 0.96766 1.00759 0.95703 1.22654 0.92744 0.93515 0.99854 1.24430 1.01843 0.96719 0.89623 1.72925 1.03311 1.03753 1.26974 1.73114 1.00507 1.11196 1.23165 1.24582 1.01189 0.94305 0.89220 1.20183 0.98444 0.96604 0.93965 1.21029 0.98730 0.95211 0.97149 1.21131 0.97964 0.95955 0.98703 1.21148 0.99937 0.99949 0.93050 1.21119 0.99495 0.95733 0.97655 1.20907 0.97475 0.95962 0.98151 0.93548 0.78349 0.96476 0.96407 0.91722 0.91977 0.90975 0.89705 0.76135 0.81881 0.80194 0.80759 0.85805 0.86048 0.86282 0.86215 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.53 5.60 -59.91 -0.34 -18.86 16 10 C 0.15 2.94 6.26 -4.05 -0.03 2.91 16 11 C -0.13 -1.82 5.21 -26.74 -0.14 -1.96 16 12 C -0.12 -1.26 4.73 -26.73 -0.13 -1.39 16 13 C 0.19 1.92 2.17 -69.08 -0.15 1.77 16 14 H 0.10 1.20 7.44 -51.93 -0.39 0.82 16 15 N -0.71 -6.65 3.73 -55.79 -0.21 -6.86 16 16 C 0.57 6.26 7.76 -12.20 -0.09 6.17 16 17 O -0.52 -7.32 16.15 5.35 0.09 -7.23 16 18 C -0.13 -1.27 5.92 -104.57 -0.62 -1.89 16 19 C -0.06 -0.49 9.77 -38.78 -0.38 -0.87 16 20 C 0.04 0.31 11.30 -17.42 -0.20 0.11 16 21 N -0.23 -2.57 11.48 30.53 0.35 -2.22 16 22 N -0.24 -2.82 11.49 30.78 0.35 -2.47 16 23 C 0.07 0.68 10.84 -16.96 -0.18 0.50 16 24 C -0.09 -0.92 4.91 -104.62 -0.51 -1.44 16 25 C -0.10 -1.03 9.67 -39.59 -0.38 -1.42 16 26 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 27 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 28 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 29 C -0.11 -1.00 9.32 -39.58 -0.37 -1.37 16 30 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 2.93 6.76 -40.82 -0.28 2.65 16 39 H 0.16 1.15 7.80 -52.48 -0.41 0.74 16 40 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.18 1.15 6.53 -52.49 -0.34 0.80 16 42 H 0.12 1.13 8.04 -52.49 -0.42 0.71 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.92 7.72 -52.49 -0.41 0.51 16 LS Contribution 394.69 15.07 5.95 5.95 Total: -1.00 -35.59 394.69 -9.03 -44.62 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.31 Total: 8.00 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -4.62 Total: -10.68 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.89 Total: -58.07 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.09 Total: -7.23 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.59 -9.03 -44.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755548334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.555 kcal (2) G-P(sol) polarization free energy of solvation -35.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds