Wall clock time and date at job start Sat Apr 11 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00471 * 2 1 4 4 H 1.48500 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46753 * 299.99932 * 3 2 1 6 6 H 1.48494 * 109.47002 * 59.99877 * 3 2 1 7 7 C 1.38824 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99649 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00264 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47513 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47372 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47251 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.47242 * 55.00305 * 13 12 11 15 15 N 1.46493 * 109.47282 * 295.00056 * 13 12 11 16 16 C 1.34777 * 120.00267 * 154.99750 * 15 13 12 17 17 O 1.21516 * 119.99863 * 0.02562 * 16 15 13 18 18 C 1.48135 * 120.00219 * 180.02562 * 16 15 13 19 19 C 1.40111 * 121.14674 * 179.72290 * 18 16 15 20 20 C 1.38497 * 117.82507 * 179.73989 * 19 18 16 21 21 N 1.31916 * 119.96650 * 0.54077 * 20 19 18 22 22 N 1.28278 * 122.51937 * 359.71812 * 21 20 19 23 23 C 1.31922 * 122.32347 * 0.02562 * 22 21 20 24 24 C 1.50702 * 109.47066 * 174.99706 * 13 12 11 25 25 C 1.38234 * 120.00271 * 259.99910 * 24 13 12 26 26 C 1.38230 * 119.99880 * 179.97438 * 25 24 13 27 27 C 1.38235 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99485 * 79.98038 * 24 13 12 30 30 H 0.97002 * 119.99486 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99877 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47109 * 59.99747 * 10 9 7 33 33 H 1.09000 * 109.47278 * 299.99875 * 10 9 7 34 34 H 1.09006 * 109.46916 * 59.99734 * 11 10 9 35 35 H 1.09006 * 109.47184 * 300.00323 * 11 10 9 36 36 H 1.08997 * 109.47102 * 59.99884 * 12 11 10 37 37 H 1.09000 * 109.47426 * 299.99926 * 12 11 10 38 38 H 0.97004 * 119.99906 * 335.00687 * 15 13 12 39 39 H 1.08006 * 121.08192 * 359.97438 * 19 18 16 40 40 H 1.08002 * 120.01591 * 180.23547 * 20 19 18 41 41 H 1.08001 * 120.17402 * 179.97438 * 23 22 21 42 42 H 1.08001 * 119.99769 * 359.97438 * 25 24 13 43 43 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 45 45 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 46 46 H 1.07997 * 120.00489 * 0.02562 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8285 -6.1447 0.0005 13 6 0.8342 -7.3077 0.0018 14 1 0.1492 -7.2010 -0.8393 15 7 0.0746 -7.2993 1.2544 16 6 -1.1501 -7.8599 1.3036 17 8 -1.6240 -8.3726 0.3091 18 6 -1.9184 -7.8509 2.5701 19 6 -3.1958 -8.4215 2.6468 20 6 -3.8503 -8.3796 3.8667 21 7 -3.2732 -7.8056 4.9048 22 7 -2.1063 -7.2767 4.8399 23 6 -1.3968 -7.2676 3.7278 24 6 1.5835 -8.6093 -0.1227 25 6 1.6678 -9.2438 -1.3479 26 6 2.3555 -10.4375 -1.4622 27 6 2.9593 -10.9964 -0.3514 28 6 2.8759 -10.3614 0.8736 29 6 2.1867 -9.1685 0.9883 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6845 -3.7146 0.8905 33 1 2.6845 -3.7147 -0.8894 34 1 0.4366 -4.7621 -0.8886 35 1 0.4373 -4.7618 0.8914 36 1 2.4558 -6.2026 0.8900 37 1 2.4546 -6.2025 -0.8899 38 1 0.4530 -6.8902 2.0484 39 1 -3.6533 -8.8824 1.7839 40 1 -4.8349 -8.8122 3.9666 41 1 -0.4177 -6.8120 3.7122 42 1 1.1964 -8.8069 -2.2159 43 1 2.4218 -10.9331 -2.4195 44 1 3.4929 -11.9313 -0.4397 45 1 3.3472 -10.7982 1.7416 46 1 2.1207 -8.6729 1.9455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755548334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:49 Heat of formation + Delta-G solvation = 32.272042 kcal Electronic energy + Delta-G solvation = -28207.409418 eV Core-core repulsion = 24289.615156 eV Total energy + Delta-G solvation = -3917.794262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.32782 -41.11295 -39.77709 -37.77735 -36.46882 -34.68223 -34.15849 -33.71596 -32.49057 -31.74460 -31.62630 -28.54681 -26.75574 -25.77332 -25.46626 -23.88743 -23.51123 -22.45991 -22.21406 -21.48409 -19.46480 -19.12129 -18.77734 -17.85545 -17.45016 -17.19418 -16.70190 -16.56289 -16.25050 -16.15948 -15.90732 -15.53675 -15.40461 -15.31474 -15.15501 -14.64377 -14.49372 -14.31077 -14.19380 -13.91662 -13.50597 -13.22627 -12.94282 -12.76868 -12.57218 -12.18953 -12.09323 -12.07733 -11.93639 -11.88700 -11.82379 -11.65891 -11.56872 -11.37554 -11.25817 -10.94670 -10.78053 -10.34007 -9.79258 -9.62904 -9.00539 -7.96450 -5.25254 -0.80754 -0.20650 0.41805 0.52660 1.47184 1.47843 1.58062 1.59931 1.83749 2.52991 2.55325 2.87750 3.00131 3.18293 3.37909 3.46350 3.47202 3.55422 3.77579 3.87219 3.97738 4.07279 4.13249 4.18615 4.30599 4.31541 4.39949 4.52737 4.56319 4.64035 4.70407 4.71824 4.73942 4.84288 4.87301 5.04634 5.06337 5.10323 5.13993 5.22998 5.40935 5.41563 5.50390 5.58430 5.64200 5.70802 6.12653 6.26415 6.27396 6.93171 7.32330 7.51640 8.09737 8.31132 9.27441 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007482 B = 0.003043 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3741.339710 B = 9199.909379 C =12117.889138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.750 5.750 10 C 0.150 3.850 11 C -0.112 4.112 12 C -0.104 4.104 13 C 0.195 3.805 14 H 0.084 0.916 15 N -0.699 5.699 16 C 0.568 3.432 17 O -0.555 6.555 18 C -0.141 4.141 19 C -0.054 4.054 20 C 0.047 3.953 21 N -0.258 5.258 22 N -0.271 5.271 23 C 0.075 3.925 24 C -0.102 4.102 25 C -0.122 4.122 26 C -0.128 4.128 27 C -0.127 4.127 28 C -0.129 4.129 29 C -0.115 4.115 30 H 0.251 0.749 31 H 0.372 0.628 32 H 0.027 0.973 33 H 0.019 0.981 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.414 0.586 39 H 0.178 0.822 40 H 0.218 0.782 41 H 0.198 0.802 42 H 0.123 0.877 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.864 -26.959 3.587 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.393 5.393 10 C 0.024 3.976 11 C -0.150 4.150 12 C -0.142 4.142 13 C 0.091 3.909 14 H 0.102 0.898 15 N -0.350 5.350 16 C 0.354 3.646 17 O -0.433 6.433 18 C -0.155 4.155 19 C -0.084 4.084 20 C -0.117 4.117 21 N -0.099 5.099 22 N -0.111 5.111 23 C -0.091 4.091 24 C -0.104 4.104 25 C -0.140 4.140 26 C -0.146 4.146 27 C -0.145 4.145 28 C -0.147 4.147 29 C -0.133 4.133 30 H 0.060 0.940 31 H 0.204 0.796 32 H 0.045 0.955 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.252 0.748 39 H 0.195 0.805 40 H 0.235 0.765 41 H 0.215 0.785 42 H 0.141 0.859 43 H 0.155 0.845 44 H 0.158 0.842 45 H 0.157 0.843 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.643 -26.779 4.498 27.162 hybrid contribution 0.060 1.029 -1.371 1.715 sum 0.703 -25.750 3.127 25.949 Atomic orbital electron populations 1.69824 1.06690 1.25998 1.59668 1.25594 0.96403 1.01217 1.03764 0.85074 0.78328 0.79727 0.76658 1.18842 1.22111 1.21994 1.19698 0.91560 0.85421 1.40971 0.90524 1.42642 1.05648 1.01516 1.89448 1.20842 0.94209 0.84729 0.97857 1.21595 0.97997 0.93575 1.01851 1.21720 0.97010 0.90514 1.04961 1.19821 0.92198 0.92118 0.86783 0.89791 1.45857 1.16498 1.58176 1.14518 1.18023 0.81492 0.78033 0.87066 1.90788 1.69922 1.45972 1.36604 1.21231 0.97392 1.01731 0.95168 1.22941 0.92302 0.92632 1.00523 1.24967 1.02844 0.95394 0.88524 1.72830 1.03626 1.04854 1.28557 1.73040 1.01253 1.12489 1.24320 1.24871 1.01846 0.93855 0.88505 1.20157 0.99114 0.96587 0.94497 1.21210 0.99442 0.96015 0.97346 1.21396 0.97674 0.95683 0.99828 1.21481 0.99575 1.00663 0.92818 1.21437 0.99198 0.95521 0.98520 1.21128 0.97387 0.96397 0.98409 0.94045 0.79645 0.95542 0.96341 0.93049 0.91843 0.89121 0.89312 0.74786 0.80489 0.76535 0.78515 0.85855 0.84452 0.84160 0.84252 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.88 13.06 21.65 0.28 -59.60 16 2 C -0.08 -4.48 5.50 84.87 0.47 -4.02 16 3 Si 0.97 46.15 29.55 68.60 2.03 48.17 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 7 C -0.24 -13.67 9.99 84.04 0.84 -12.83 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 9 N -0.75 -37.90 5.60 -343.47 -1.92 -39.83 16 10 C 0.15 5.61 6.26 86.38 0.54 6.15 16 11 C -0.11 -3.17 5.21 30.59 0.16 -3.01 16 12 C -0.10 -2.07 4.73 30.59 0.14 -1.92 16 13 C 0.20 3.86 2.17 44.25 0.10 3.96 16 14 H 0.08 2.00 7.44 -2.39 -0.02 1.98 16 15 N -0.70 -12.42 3.73 -448.71 -1.67 -14.10 16 16 C 0.57 12.25 7.76 86.87 0.67 12.93 16 17 O -0.55 -15.62 16.15 -3.76 -0.06 -15.68 16 18 C -0.14 -2.63 5.92 -19.83 -0.12 -2.74 16 19 C -0.05 -0.85 9.77 22.79 0.22 -0.63 16 20 C 0.05 0.70 11.30 84.74 0.96 1.66 16 21 N -0.26 -5.64 11.48 -57.34 -0.66 -6.30 16 22 N -0.27 -6.28 11.49 -56.53 -0.65 -6.93 16 23 C 0.07 1.36 10.84 85.04 0.92 2.28 16 24 C -0.10 -1.98 4.91 -19.87 -0.10 -2.07 16 25 C -0.12 -2.37 9.67 22.27 0.22 -2.16 16 26 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 27 C -0.13 -1.93 10.05 22.27 0.22 -1.70 16 28 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 29 C -0.12 -1.94 9.32 22.27 0.21 -1.73 16 30 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.37 20.13 7.67 -92.71 -0.71 19.42 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.06 1.77 7.75 -2.38 -0.02 1.76 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.41 5.33 6.76 -92.71 -0.63 4.70 16 39 H 0.18 2.26 7.80 -2.91 -0.02 2.23 16 40 H 0.22 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.20 2.32 6.53 -2.91 -0.02 2.31 16 42 H 0.12 2.29 8.04 -2.91 -0.02 2.26 16 43 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 44 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 45 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 46 H 0.13 1.74 7.72 -2.91 -0.02 1.72 16 Total: -1.00 -77.06 394.69 2.92 -74.14 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: -0.32 Total: 29.64 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 5.90 Total: -9.52 kcal Atomic # 7 Polarization: -122.12 SS G_CDS: -4.62 Total: -126.74 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.06 Total: -15.68 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -77.06 2.92 -74.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755548334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.411 kcal (2) G-P(sol) polarization free energy of solvation -77.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds