Wall clock time and date at job start Sat Apr 11 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99741 * 2 1 4 4 H 1.48499 * 109.47195 * 239.99746 * 3 2 1 5 5 H 1.48506 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46974 * 119.99860 * 3 2 1 7 7 C 1.38814 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47563 * 305.00337 * 13 12 11 15 15 N 1.46502 * 109.47005 * 64.99872 * 13 12 11 16 16 C 1.34773 * 120.00306 * 205.00035 * 15 13 12 17 17 O 1.21519 * 119.99734 * 0.02562 * 16 15 13 18 18 C 1.48137 * 120.00405 * 180.02562 * 16 15 13 19 19 C 1.40109 * 121.14434 * 179.72051 * 18 16 15 20 20 C 1.38505 * 117.81856 * 179.74130 * 19 18 16 21 21 N 1.31916 * 119.97144 * 0.54521 * 20 19 18 22 22 N 1.28277 * 122.51213 * 359.71427 * 21 20 19 23 23 C 1.31922 * 122.32838 * 0.02562 * 22 21 20 24 24 C 1.50700 * 109.47798 * 185.00026 * 13 12 11 25 25 C 1.38243 * 119.99881 * 279.73067 * 24 13 12 26 26 C 1.38236 * 119.99546 * 179.78181 * 25 24 13 27 27 C 1.38230 * 120.00068 * 0.44148 * 26 25 24 28 28 C 1.38228 * 120.00363 * 359.81337 * 27 26 25 29 29 C 1.38231 * 119.99932 * 359.97297 * 28 27 26 30 30 H 0.96993 * 120.00311 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99550 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46813 * 60.00266 * 10 9 7 33 33 H 1.08992 * 109.47397 * 300.00328 * 10 9 7 34 34 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 35 35 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 36 36 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 37 37 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 38 38 H 0.97003 * 120.00235 * 25.00789 * 15 13 12 39 39 H 1.07997 * 121.09032 * 359.97438 * 19 18 16 40 40 H 1.08007 * 120.01461 * 180.26160 * 20 19 18 41 41 H 1.08004 * 120.17110 * 180.02562 * 23 22 21 42 42 H 1.07998 * 119.99681 * 359.97438 * 25 24 13 43 43 H 1.08001 * 119.99400 * 180.27071 * 26 25 24 44 44 H 1.08007 * 119.99792 * 179.83387 * 27 26 25 45 45 H 1.07998 * 120.00222 * 180.02562 * 28 27 26 46 46 H 1.08000 * 120.00023 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 6 1.0640 -4.8197 0.0001 12 6 1.8290 -6.1447 0.0008 13 6 0.8349 -7.3076 0.0008 14 1 0.1504 -7.2006 0.8422 15 7 0.0743 -7.2999 -1.2513 16 6 -1.1503 -7.8605 -1.2994 17 8 -1.6237 -8.3722 -0.3041 18 6 -1.9191 -7.8532 -2.5656 19 6 -3.1917 -8.4343 -2.6441 20 6 -3.8516 -8.3834 -3.8607 21 7 -3.2748 -7.8107 -4.8998 22 7 -2.1080 -7.2818 -4.8359 23 6 -1.3976 -7.2721 -3.7243 24 6 1.5843 -8.6092 0.1252 25 6 2.1815 -9.1720 -0.9873 26 6 2.8727 -10.3636 -0.8721 27 6 2.9588 -10.9971 0.3535 28 6 2.3571 -10.4370 1.4648 29 6 1.6697 -9.2432 1.3506 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6849 -3.7144 0.8895 33 1 2.6849 -3.7145 -0.8904 34 1 0.4376 -4.7618 0.8903 35 1 0.4371 -4.7622 -0.8897 36 1 2.4557 -6.2028 -0.8892 37 1 2.4558 -6.2020 0.8907 38 1 0.4522 -6.8912 -2.0458 39 1 -3.6447 -8.9030 -1.7830 40 1 -4.8360 -8.8165 -3.9599 41 1 -0.4185 -6.8164 -3.7098 42 1 2.1108 -8.6791 -1.9456 43 1 3.3430 -10.8011 -1.7404 44 1 3.4965 -11.9295 0.4429 45 1 2.4247 -10.9317 2.4224 46 1 1.1999 -8.8054 2.2190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755548335.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:53 Heat of formation + Delta-G solvation = 55.128917 kcal Electronic energy + Delta-G solvation = -28206.634882 eV Core-core repulsion = 24289.831769 eV Total energy + Delta-G solvation = -3916.803113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57084 -40.31657 -39.01177 -36.67252 -34.94462 -33.78141 -33.19000 -32.45667 -31.53907 -31.04895 -30.16986 -27.33767 -25.76018 -24.91450 -24.15618 -22.89229 -22.40917 -21.63322 -20.88310 -20.68080 -18.65411 -18.04461 -17.24409 -16.97244 -16.76688 -16.32420 -15.79100 -15.55560 -15.39238 -14.85970 -14.77430 -14.60197 -14.52219 -13.95750 -13.82340 -13.70089 -13.59286 -13.35322 -13.06634 -12.98552 -12.31468 -11.92370 -11.76065 -11.37713 -11.30850 -11.21695 -10.90627 -10.87113 -10.78039 -10.63192 -10.60946 -10.52673 -10.48786 -10.09081 -9.99286 -9.73636 -9.47750 -9.10792 -8.91115 -8.88129 -6.93942 -5.77522 -3.06614 -0.05600 0.46562 1.11668 1.21051 2.42738 2.63203 3.27016 3.43409 3.47582 3.48891 3.57972 3.66384 3.89983 4.11754 4.18748 4.41553 4.43889 4.60109 4.64165 4.76547 4.83992 4.88693 4.91552 5.03893 5.21128 5.25652 5.29899 5.37347 5.38318 5.52014 5.58192 5.67318 5.74850 5.76588 5.82622 5.91644 6.08257 6.10696 6.23031 6.28109 6.30745 6.34195 6.43453 6.78523 6.80027 6.83313 7.05404 7.68033 7.74322 8.24653 8.41407 9.52245 10.10400 10.44464 11.45339 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007488 B = 0.003041 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3738.504788 B = 9203.917797 C =12119.907211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.153 3.847 11 C -0.126 4.126 12 C -0.118 4.118 13 C 0.187 3.813 14 H 0.102 0.898 15 N -0.708 5.708 16 C 0.566 3.434 17 O -0.520 6.520 18 C -0.130 4.130 19 C -0.058 4.058 20 C 0.038 3.962 21 N -0.227 5.227 22 N -0.239 5.239 23 C 0.072 3.928 24 C -0.091 4.091 25 C -0.107 4.107 26 C -0.122 4.122 27 C -0.123 4.123 28 C -0.119 4.119 29 C -0.103 4.103 30 H 0.256 0.744 31 H 0.383 0.617 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.403 0.597 39 H 0.164 0.836 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.426 -25.646 -3.099 25.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.026 3.974 11 C -0.164 4.164 12 C -0.156 4.156 13 C 0.083 3.917 14 H 0.120 0.880 15 N -0.360 5.360 16 C 0.351 3.649 17 O -0.395 6.395 18 C -0.145 4.145 19 C -0.088 4.088 20 C -0.126 4.126 21 N -0.070 5.070 22 N -0.080 5.080 23 C -0.093 4.093 24 C -0.092 4.092 25 C -0.125 4.125 26 C -0.140 4.140 27 C -0.141 4.141 28 C -0.138 4.138 29 C -0.121 4.121 30 H 0.066 0.934 31 H 0.217 0.783 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.239 0.761 39 H 0.181 0.819 40 H 0.198 0.802 41 H 0.192 0.808 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.722 -25.438 -3.976 25.757 hybrid contribution 0.460 0.737 1.177 1.463 sum -0.262 -24.701 -2.799 24.860 Atomic orbital electron populations 1.69646 1.05140 1.25814 1.57658 1.24751 0.95526 0.97733 1.02964 0.86262 0.78528 0.83497 0.77867 1.21222 1.21656 1.21251 1.19190 0.91000 0.84218 1.42883 0.91247 1.42359 1.05858 1.00069 1.89552 1.20626 0.93455 0.85578 0.97754 1.21757 0.98908 0.93340 1.02393 1.21853 0.97266 0.92692 1.03821 1.20033 0.92704 0.91921 0.87074 0.87965 1.45928 1.16946 1.58813 1.14294 1.17861 0.81316 0.78609 0.87135 1.90806 1.69109 1.44293 1.35309 1.21249 0.96821 1.00721 0.95678 1.22653 0.92746 0.93532 0.99839 1.24433 1.01800 0.96744 0.89637 1.72927 1.03357 1.03786 1.26892 1.73112 1.00520 1.11116 1.23236 1.24581 1.01143 0.94362 0.89216 1.20186 0.98469 0.96588 0.93955 1.20908 0.97504 0.95951 0.98134 1.21116 0.99476 0.95746 0.97661 1.21146 0.99939 0.99956 0.93043 1.21130 0.97987 0.95942 0.98695 1.21029 0.98724 0.95208 0.97157 0.93436 0.78343 0.96423 0.96475 0.91721 0.91980 0.90976 0.89706 0.76134 0.81883 0.80194 0.80758 0.86418 0.86215 0.86282 0.86047 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.55 5.60 -59.91 -0.34 -18.88 16 10 C 0.15 2.94 6.26 -4.04 -0.03 2.92 16 11 C -0.13 -1.83 5.22 -26.73 -0.14 -1.97 16 12 C -0.12 -1.26 4.73 -26.74 -0.13 -1.39 16 13 C 0.19 1.92 2.17 -69.08 -0.15 1.77 16 14 H 0.10 1.20 7.44 -51.93 -0.39 0.82 16 15 N -0.71 -6.66 3.72 -55.79 -0.21 -6.87 16 16 C 0.57 6.26 7.76 -12.20 -0.09 6.17 16 17 O -0.52 -7.32 16.15 5.35 0.09 -7.24 16 18 C -0.13 -1.27 5.92 -104.58 -0.62 -1.89 16 19 C -0.06 -0.49 9.77 -38.78 -0.38 -0.87 16 20 C 0.04 0.31 11.30 -17.42 -0.20 0.11 16 21 N -0.23 -2.57 11.48 30.53 0.35 -2.22 16 22 N -0.24 -2.82 11.49 30.78 0.35 -2.47 16 23 C 0.07 0.68 10.84 -16.96 -0.18 0.50 16 24 C -0.09 -0.92 4.92 -104.62 -0.51 -1.44 16 25 C -0.11 -1.00 9.33 -39.58 -0.37 -1.37 16 26 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 27 C -0.12 -1.06 10.05 -39.59 -0.40 -1.45 16 28 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 29 C -0.10 -1.03 9.67 -39.58 -0.38 -1.42 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 2.93 6.76 -40.82 -0.28 2.65 16 39 H 0.16 1.15 7.80 -52.49 -0.41 0.74 16 40 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.18 1.15 6.53 -52.48 -0.34 0.81 16 42 H 0.12 0.92 7.71 -52.49 -0.40 0.52 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 46 H 0.12 1.13 8.04 -52.49 -0.42 0.71 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -35.57 394.67 -9.03 -44.60 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.31 Total: 8.10 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -4.62 Total: -10.71 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.89 Total: -58.13 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.09 Total: -7.24 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.57 -9.03 -44.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755548335.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.730 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds