Wall clock time and date at job start Sat Apr 11 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99735 * 2 1 4 4 H 1.48502 * 109.47154 * 270.00440 * 3 2 1 5 5 H 1.48500 * 109.47018 * 30.00305 * 3 2 1 6 6 H 1.48497 * 109.47324 * 150.00164 * 3 2 1 7 7 C 1.38804 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00112 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00227 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.47595 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.47202 * 60.00018 * 10 9 7 13 13 C 1.53001 * 109.46991 * 64.99924 * 12 10 9 14 14 N 1.46498 * 109.46777 * 180.02562 * 13 12 10 15 15 C 1.34776 * 119.99780 * 180.02562 * 14 13 12 16 16 O 1.21515 * 120.00160 * 359.97438 * 15 14 13 17 17 C 1.48148 * 120.00017 * 180.02562 * 15 14 13 18 18 C 1.39443 * 120.09698 * 180.02562 * 17 15 14 19 19 N 1.32079 * 119.87260 * 179.97438 * 18 17 15 20 20 C 1.32142 * 120.07304 * 359.97438 * 19 18 17 21 21 C 1.38724 * 120.19178 * 0.28422 * 20 19 18 22 22 N 1.31797 * 120.12804 * 359.43155 * 21 20 19 23 23 C 1.52995 * 109.47106 * 300.00373 * 10 9 7 24 24 C 1.50706 * 109.47036 * 294.99788 * 23 10 9 25 25 C 1.38236 * 120.00102 * 269.72733 * 24 23 10 26 26 C 1.38232 * 120.00299 * 179.76364 * 25 24 23 27 27 C 1.38236 * 119.99495 * 0.50812 * 26 25 24 28 28 C 1.38237 * 120.00414 * 359.74591 * 27 26 25 29 29 C 1.38236 * 119.99831 * 89.99912 * 24 23 10 30 30 H 0.97000 * 120.00176 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99816 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47021 * 305.00267 * 12 10 9 33 33 H 1.08995 * 109.47066 * 185.00583 * 12 10 9 34 34 H 1.09001 * 109.46959 * 60.00305 * 13 12 10 35 35 H 1.09002 * 109.46922 * 300.00257 * 13 12 10 36 36 H 0.97003 * 120.00291 * 359.97438 * 14 13 12 37 37 H 1.07999 * 120.06715 * 359.94846 * 18 17 15 38 38 H 1.08002 * 119.90049 * 180.02562 * 20 19 18 39 39 H 1.08008 * 119.93444 * 179.69733 * 21 20 19 40 40 H 1.08998 * 109.47610 * 54.99708 * 23 10 9 41 41 H 1.08999 * 109.47635 * 175.00111 * 23 10 9 42 42 H 1.08006 * 119.99612 * 359.97438 * 25 24 23 43 43 H 1.07992 * 120.00305 * 180.23268 * 26 25 24 44 44 H 1.08001 * 119.99727 * 179.72580 * 27 26 25 45 45 H 1.07997 * 119.99849 * 179.97438 * 28 27 26 46 46 H 1.07995 * 120.00295 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 1.3500 -4.4852 -0.0001 12 6 2.9379 -3.7378 1.2488 13 6 2.0512 -3.7823 2.4948 14 7 2.8935 -3.8593 3.6910 15 6 2.3262 -3.9096 4.9125 16 8 1.1161 -3.8907 5.0217 17 6 3.1779 -3.9869 6.1222 18 6 2.5931 -4.0396 7.3870 19 7 3.3567 -4.1089 8.4624 20 6 4.6723 -4.1289 8.3403 21 6 5.2572 -4.0712 7.0837 22 7 4.5026 -4.0075 6.0050 23 6 2.9379 -3.7377 -1.2497 24 6 2.0645 -3.7816 -2.4771 25 6 1.6441 -4.9974 -2.9831 26 6 0.8390 -5.0375 -4.1061 27 6 0.4630 -3.8623 -4.7292 28 6 0.8877 -2.6467 -4.2263 29 6 1.6885 -2.6064 -3.1002 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 3.5853 -2.8621 1.2947 33 1 3.5488 -4.6393 1.2050 34 1 1.4038 -4.6581 2.4489 35 1 1.4402 -2.8807 2.5384 36 1 3.8595 -3.8748 3.6038 37 1 1.5179 -4.0233 7.4870 38 1 5.2940 -4.1860 9.2215 39 1 6.3331 -4.0828 6.9889 40 1 3.5853 -2.8620 -1.2956 41 1 3.5488 -4.6393 -1.2061 42 1 1.9419 -5.9158 -2.4990 43 1 0.5075 -5.9871 -4.4992 44 1 -0.1624 -3.8938 -5.6092 45 1 0.5943 -1.7286 -4.7134 46 1 2.0209 -1.6567 -2.7077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755721756.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:58 Heat of formation + Delta-G solvation = 44.927167 kcal Electronic energy + Delta-G solvation = -28253.297498 eV Core-core repulsion = 24336.052004 eV Total energy + Delta-G solvation = -3917.245494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45619 -39.23565 -38.78838 -36.59003 -34.89665 -34.26132 -32.47572 -32.02822 -30.97639 -30.29646 -29.16584 -27.17654 -25.61093 -24.80141 -24.12293 -22.92865 -21.96454 -20.89782 -20.72232 -19.52933 -18.23163 -17.80975 -17.17179 -16.93661 -16.15691 -15.72725 -15.58887 -15.25100 -15.14710 -14.58516 -14.57246 -14.33000 -13.97635 -13.85371 -13.25945 -13.12905 -12.97454 -12.86893 -12.80691 -12.38507 -12.02345 -11.66565 -11.61364 -11.46289 -11.34221 -10.99706 -10.89633 -10.76888 -10.49201 -10.41463 -10.36772 -10.25097 -9.79270 -9.76288 -9.57619 -9.40082 -8.95106 -8.78208 -8.33858 -8.06500 -6.96217 -5.76887 -3.05619 0.12527 0.71762 1.92353 2.00816 2.67371 3.07955 3.40058 3.45877 3.48483 3.57461 3.74806 3.87418 4.14248 4.37274 4.57155 4.58024 4.83044 4.95556 5.19906 5.31915 5.34099 5.42492 5.46362 5.52983 5.59615 5.69132 5.82696 5.93626 5.98510 6.03638 6.11600 6.15282 6.24375 6.37722 6.43437 6.49174 6.66095 6.67792 6.71741 6.78614 6.81089 6.93708 6.98714 7.14358 7.28397 7.37692 7.63147 7.65370 7.68199 8.23492 8.39981 9.52188 10.09409 10.44325 11.44834 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.002722 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.645840 B =10284.153468 C =11778.217967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.006 4.006 3 Si 0.895 3.105 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.715 5.715 10 C 0.187 3.813 11 H 0.055 0.945 12 C -0.139 4.139 13 C 0.124 3.876 14 N -0.701 5.701 15 C 0.567 3.433 16 O -0.527 6.527 17 C 0.037 3.963 18 C 0.107 3.893 19 N -0.441 5.441 20 C 0.066 3.934 21 C 0.049 3.951 22 N -0.413 5.413 23 C -0.094 4.094 24 C -0.057 4.057 25 C -0.130 4.130 26 C -0.133 4.133 27 C -0.136 4.136 28 C -0.124 4.124 29 C -0.079 4.079 30 H 0.254 0.746 31 H 0.386 0.614 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.406 0.594 37 H 0.184 0.816 38 H 0.175 0.825 39 H 0.177 0.823 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.249 -11.573 6.400 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.726 3.274 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.355 5.355 10 C 0.075 3.925 11 H 0.074 0.926 12 C -0.180 4.180 13 C 0.002 3.998 14 N -0.350 5.350 15 C 0.349 3.651 16 O -0.403 6.403 17 C -0.104 4.104 18 C -0.052 4.052 19 N -0.155 5.155 20 C -0.095 4.095 21 C -0.113 4.113 22 N -0.131 5.131 23 C -0.133 4.133 24 C -0.057 4.057 25 C -0.148 4.148 26 C -0.151 4.151 27 C -0.155 4.155 28 C -0.142 4.142 29 C -0.097 4.097 30 H 0.064 0.936 31 H 0.219 0.781 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.242 0.758 37 H 0.201 0.799 38 H 0.192 0.808 39 H 0.194 0.806 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.131 0.869 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.408 -11.399 6.428 16.117 hybrid contribution 0.712 1.098 0.000 1.308 sum 10.120 -10.301 6.427 15.806 Atomic orbital electron populations 1.69652 1.04960 1.25496 1.57110 1.24665 0.95291 0.97295 1.03068 0.86389 0.78771 0.84747 0.77460 1.21821 1.21947 1.20942 1.19017 0.90785 0.83923 1.42793 0.91292 1.42375 1.05668 0.99556 1.87882 1.20054 0.92428 0.90054 0.89976 0.92628 1.22276 0.99045 1.01255 0.95385 1.21500 0.93314 1.03103 0.81896 1.45972 1.11380 1.72021 1.05645 1.17609 0.86842 0.78007 0.82630 1.90830 1.13156 1.50149 1.86161 1.22392 0.91240 1.00757 0.96046 1.23884 1.02381 0.91659 0.87307 1.68630 1.05847 1.08967 1.32032 1.24098 0.92182 0.94060 0.99133 1.23864 1.01769 0.96838 0.88852 1.68366 1.04775 1.06546 1.33376 1.21149 0.97311 1.01287 0.93576 1.19797 0.97679 0.92573 0.95662 1.20963 0.99573 0.97269 0.96986 1.20923 0.99653 0.97557 0.96967 1.20977 1.01212 0.92953 1.00309 1.21146 0.98590 0.97271 0.97204 1.21285 0.95977 0.99034 0.93406 0.93573 0.78050 0.90770 0.92985 0.92207 0.89100 0.75846 0.79911 0.80787 0.80595 0.90679 0.92705 0.87048 0.87209 0.87254 0.86915 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.56 13.06 55.49 0.72 -25.84 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.89 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -5.72 7.88 -15.06 -0.12 -5.84 16 8 H 0.07 1.65 6.64 -52.49 -0.35 1.30 16 9 N -0.72 -15.79 4.13 -53.43 -0.22 -16.01 16 10 C 0.19 3.26 2.67 -67.93 -0.18 3.08 16 11 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 12 C -0.14 -2.17 4.73 -26.73 -0.13 -2.29 16 13 C 0.12 2.07 5.56 -4.04 -0.02 2.05 16 14 N -0.70 -10.41 5.55 -61.15 -0.34 -10.75 16 15 C 0.57 8.95 7.81 -12.19 -0.10 8.85 16 16 O -0.53 -9.96 16.35 5.35 0.09 -9.87 16 17 C 0.04 0.48 6.75 -82.84 -0.56 -0.08 16 18 C 0.11 1.28 10.77 -17.00 -0.18 1.10 16 19 N -0.44 -4.74 10.49 -12.71 -0.13 -4.87 16 20 C 0.07 0.51 11.23 -17.24 -0.19 0.31 16 21 C 0.05 0.39 11.22 -17.39 -0.20 0.19 16 22 N -0.41 -4.65 9.71 -9.61 -0.09 -4.74 16 23 C -0.09 -1.53 4.75 -27.88 -0.13 -1.66 16 24 C -0.06 -0.98 4.95 -104.62 -0.52 -1.50 16 25 C -0.13 -2.00 9.70 -39.58 -0.38 -2.39 16 26 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 27 C -0.14 -2.09 10.05 -39.58 -0.40 -2.49 16 28 C -0.12 -2.13 10.05 -39.58 -0.40 -2.53 16 29 C -0.08 -1.49 9.31 -39.58 -0.37 -1.86 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 31 H 0.39 9.63 8.03 -40.82 -0.33 9.31 16 32 H 0.07 1.26 7.11 -51.93 -0.37 0.89 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.89 7.75 -51.93 -0.40 1.49 16 36 H 0.41 5.25 7.82 -40.82 -0.32 4.93 16 37 H 0.18 2.08 7.65 -52.49 -0.40 1.67 16 38 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.18 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.07 1.33 7.05 -51.93 -0.37 0.96 16 41 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 42 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 43 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 45 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 46 H 0.13 2.82 7.37 -52.49 -0.39 2.43 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -31.01 391.74 -9.74 -40.75 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -6.28 Total: 16.64 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -4.37 Total: -7.68 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.06 Total: -62.22 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.01 -9.74 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755721756.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.681 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds