Wall clock time and date at job start Sat Apr 11 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99735 * 2 1 4 4 H 1.48502 * 109.47154 * 270.00440 * 3 2 1 5 5 H 1.48500 * 109.47018 * 30.00305 * 3 2 1 6 6 H 1.48497 * 109.47324 * 150.00164 * 3 2 1 7 7 C 1.38804 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00112 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00227 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.47595 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.47202 * 60.00018 * 10 9 7 13 13 C 1.53001 * 109.46991 * 64.99924 * 12 10 9 14 14 N 1.46498 * 109.46777 * 180.02562 * 13 12 10 15 15 C 1.34776 * 119.99780 * 180.02562 * 14 13 12 16 16 O 1.21515 * 120.00160 * 359.97438 * 15 14 13 17 17 C 1.48148 * 120.00017 * 180.02562 * 15 14 13 18 18 C 1.39443 * 120.09698 * 180.02562 * 17 15 14 19 19 N 1.32079 * 119.87260 * 179.97438 * 18 17 15 20 20 C 1.32142 * 120.07304 * 359.97438 * 19 18 17 21 21 C 1.38724 * 120.19178 * 0.28422 * 20 19 18 22 22 N 1.31797 * 120.12804 * 359.43155 * 21 20 19 23 23 C 1.52995 * 109.47106 * 300.00373 * 10 9 7 24 24 C 1.50706 * 109.47036 * 294.99788 * 23 10 9 25 25 C 1.38236 * 120.00102 * 269.72733 * 24 23 10 26 26 C 1.38232 * 120.00299 * 179.76364 * 25 24 23 27 27 C 1.38236 * 119.99495 * 0.50812 * 26 25 24 28 28 C 1.38237 * 120.00414 * 359.74591 * 27 26 25 29 29 C 1.38236 * 119.99831 * 89.99912 * 24 23 10 30 30 H 0.97000 * 120.00176 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99816 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47021 * 305.00267 * 12 10 9 33 33 H 1.08995 * 109.47066 * 185.00583 * 12 10 9 34 34 H 1.09001 * 109.46959 * 60.00305 * 13 12 10 35 35 H 1.09002 * 109.46922 * 300.00257 * 13 12 10 36 36 H 0.97003 * 120.00291 * 359.97438 * 14 13 12 37 37 H 1.07999 * 120.06715 * 359.94846 * 18 17 15 38 38 H 1.08002 * 119.90049 * 180.02562 * 20 19 18 39 39 H 1.08008 * 119.93444 * 179.69733 * 21 20 19 40 40 H 1.08998 * 109.47610 * 54.99708 * 23 10 9 41 41 H 1.08999 * 109.47635 * 175.00111 * 23 10 9 42 42 H 1.08006 * 119.99612 * 359.97438 * 25 24 23 43 43 H 1.07992 * 120.00305 * 180.23268 * 26 25 24 44 44 H 1.08001 * 119.99727 * 179.72580 * 27 26 25 45 45 H 1.07997 * 119.99849 * 179.97438 * 28 27 26 46 46 H 1.07995 * 120.00295 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 1.3500 -4.4852 -0.0001 12 6 2.9379 -3.7378 1.2488 13 6 2.0512 -3.7823 2.4948 14 7 2.8935 -3.8593 3.6910 15 6 2.3262 -3.9096 4.9125 16 8 1.1161 -3.8907 5.0217 17 6 3.1779 -3.9869 6.1222 18 6 2.5931 -4.0396 7.3870 19 7 3.3567 -4.1089 8.4624 20 6 4.6723 -4.1289 8.3403 21 6 5.2572 -4.0712 7.0837 22 7 4.5026 -4.0075 6.0050 23 6 2.9379 -3.7377 -1.2497 24 6 2.0645 -3.7816 -2.4771 25 6 1.6441 -4.9974 -2.9831 26 6 0.8390 -5.0375 -4.1061 27 6 0.4630 -3.8623 -4.7292 28 6 0.8877 -2.6467 -4.2263 29 6 1.6885 -2.6064 -3.1002 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 3.5853 -2.8621 1.2947 33 1 3.5488 -4.6393 1.2050 34 1 1.4038 -4.6581 2.4489 35 1 1.4402 -2.8807 2.5384 36 1 3.8595 -3.8748 3.6038 37 1 1.5179 -4.0233 7.4870 38 1 5.2940 -4.1860 9.2215 39 1 6.3331 -4.0828 6.9889 40 1 3.5853 -2.8620 -1.2956 41 1 3.5488 -4.6393 -1.2061 42 1 1.9419 -5.9158 -2.4990 43 1 0.5075 -5.9871 -4.4992 44 1 -0.1624 -3.8938 -5.6092 45 1 0.5943 -1.7286 -4.7134 46 1 2.0209 -1.6567 -2.7077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755721756.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:57 Heat of formation + Delta-G solvation = 24.082973 kcal Electronic energy + Delta-G solvation = -28254.201370 eV Core-core repulsion = 24336.052004 eV Total energy + Delta-G solvation = -3918.149366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.28947 -40.45781 -40.07116 -38.06022 -36.03871 -35.34279 -34.23131 -32.90351 -32.32621 -31.56619 -30.79557 -28.54501 -26.55447 -25.99076 -25.57927 -24.20506 -23.24169 -22.09500 -22.02853 -21.02422 -19.39637 -18.85421 -18.60290 -17.76549 -17.41005 -17.11286 -16.81452 -16.63242 -16.04302 -15.97620 -15.81088 -15.70711 -15.34264 -15.07997 -14.98036 -14.39614 -14.26229 -14.09313 -13.88823 -13.77102 -13.10331 -13.01405 -12.86270 -12.81490 -12.76787 -12.49296 -12.42945 -12.34155 -12.16116 -11.73760 -11.68640 -11.60458 -11.49835 -11.23752 -10.83886 -10.58038 -10.22907 -10.09541 -9.62447 -9.38873 -8.83804 -7.82614 -5.07128 -0.69943 -0.03467 0.65721 0.72588 1.45275 1.46440 1.52623 1.60963 1.96283 2.60938 2.70079 2.90367 3.08775 3.16899 3.36846 3.52472 3.76263 3.94264 4.00817 4.07737 4.17644 4.22456 4.30843 4.32951 4.40031 4.45473 4.51735 4.62179 4.67910 4.79227 4.84671 4.87906 4.98912 5.11485 5.16578 5.24951 5.27052 5.38229 5.41550 5.45991 5.53666 5.65456 5.74212 5.82854 6.01651 6.05562 6.35147 6.37316 6.38147 6.62938 7.05260 7.45508 8.22164 8.44304 9.41073 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.002722 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.645840 B =10284.153468 C =11778.217967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.944 3.056 4 H -0.293 1.293 5 H -0.308 1.308 6 H -0.271 1.271 7 C -0.197 4.197 8 H 0.077 0.923 9 N -0.722 5.722 10 C 0.182 3.818 11 H 0.065 0.935 12 C -0.125 4.125 13 C 0.135 3.865 14 N -0.693 5.693 15 C 0.563 3.437 16 O -0.570 6.570 17 C 0.012 3.988 18 C 0.098 3.902 19 N -0.460 5.460 20 C 0.085 3.915 21 C 0.060 3.940 22 N -0.427 5.427 23 C -0.085 4.085 24 C -0.072 4.072 25 C -0.129 4.129 26 C -0.129 4.129 27 C -0.137 4.137 28 C -0.143 4.143 29 C -0.108 4.108 30 H 0.242 0.758 31 H 0.369 0.631 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.418 0.582 37 H 0.175 0.825 38 H 0.222 0.778 39 H 0.223 0.777 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.136 0.864 45 H 0.112 0.888 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.528 -14.535 7.019 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.264 4.264 3 Si 0.776 3.224 4 H -0.221 1.221 5 H -0.236 1.236 6 H -0.196 1.196 7 C -0.329 4.329 8 H 0.095 0.905 9 N -0.359 5.359 10 C 0.072 3.928 11 H 0.084 0.916 12 C -0.165 4.165 13 C 0.011 3.989 14 N -0.343 5.343 15 C 0.348 3.652 16 O -0.450 6.450 17 C -0.127 4.127 18 C -0.060 4.060 19 N -0.174 5.174 20 C -0.077 4.077 21 C -0.104 4.104 22 N -0.145 5.145 23 C -0.124 4.124 24 C -0.072 4.072 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.155 4.155 28 C -0.161 4.161 29 C -0.126 4.126 30 H 0.051 0.949 31 H 0.199 0.801 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.255 0.745 37 H 0.192 0.808 38 H 0.239 0.761 39 H 0.240 0.760 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.160 0.840 43 H 0.163 0.837 44 H 0.154 0.846 45 H 0.130 0.870 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.743 -14.399 7.022 20.470 hybrid contribution -0.141 1.854 -0.122 1.864 sum 12.602 -12.545 6.901 19.074 Atomic orbital electron populations 1.69800 1.06303 1.24956 1.60821 1.25227 0.95816 0.99932 1.05441 0.85556 0.77975 0.81810 0.77041 1.22060 1.23603 1.19639 1.19271 0.91020 0.84551 1.38049 0.90526 1.42501 1.05004 1.00776 1.87665 1.20339 0.92931 0.88033 0.91463 0.91635 1.22127 0.98326 1.02630 0.93388 1.21209 0.93478 1.00814 0.83353 1.45828 1.11720 1.71723 1.04999 1.18089 0.86737 0.76790 0.83612 1.90794 1.15166 1.52089 1.86910 1.21847 0.91991 1.04110 0.94723 1.23762 1.02449 0.92257 0.87524 1.68694 1.07497 1.09890 1.31323 1.24959 0.91281 0.90518 1.00928 1.24693 1.03472 0.94343 0.87913 1.68327 1.03875 1.07091 1.35178 1.21052 0.96845 1.02235 0.92272 1.19937 0.98311 0.92838 0.96095 1.21302 0.98914 0.97394 0.97049 1.21378 0.98381 0.98710 0.96247 1.21307 1.00881 0.92321 1.00997 1.21289 0.99012 0.98581 0.97225 1.21129 0.98064 0.98365 0.95040 0.94873 0.80058 0.92088 0.88820 0.92050 0.93937 0.74488 0.80814 0.76126 0.76040 0.92540 0.88961 0.84047 0.83712 0.84604 0.86978 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.78 13.06 21.65 0.28 -58.50 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.94 46.03 29.55 68.60 2.03 48.06 16 4 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 5 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.20 -9.91 7.88 84.03 0.66 -9.25 16 8 H 0.08 3.71 6.64 -2.91 -0.02 3.69 16 9 N -0.72 -32.88 4.13 -322.95 -1.33 -34.22 16 10 C 0.18 6.21 2.67 44.99 0.12 6.33 16 11 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 12 C -0.13 -3.70 4.73 30.60 0.14 -3.56 16 13 C 0.13 4.55 5.56 86.38 0.48 5.03 16 14 N -0.69 -20.61 5.55 -465.68 -2.58 -23.19 16 15 C 0.56 18.38 7.81 86.88 0.68 19.05 16 16 O -0.57 -22.91 16.35 -3.76 -0.06 -22.97 16 17 C 0.01 0.31 6.75 41.89 0.28 0.59 16 18 C 0.10 2.36 10.77 84.95 0.92 3.28 16 19 N -0.46 -9.08 10.49 -194.12 -2.04 -11.12 16 20 C 0.09 0.97 11.23 84.76 0.95 1.92 16 21 C 0.06 0.70 11.22 84.81 0.95 1.65 16 22 N -0.43 -8.72 9.71 -184.33 -1.79 -10.51 16 23 C -0.08 -2.63 4.75 29.85 0.14 -2.49 16 24 C -0.07 -2.40 4.95 -19.86 -0.10 -2.50 16 25 C -0.13 -3.58 9.70 22.27 0.22 -3.36 16 26 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 27 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 28 C -0.14 -4.99 10.05 22.27 0.22 -4.77 16 29 C -0.11 -4.18 9.31 22.27 0.21 -3.98 16 30 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.37 19.32 8.03 -92.71 -0.74 18.57 16 32 H 0.06 2.00 7.11 -2.39 -0.02 1.98 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.04 1.86 7.75 -2.39 -0.02 1.84 16 36 H 0.42 10.31 7.82 -92.71 -0.73 9.59 16 37 H 0.17 4.29 7.65 -2.91 -0.02 4.26 16 38 H 0.22 0.33 8.06 -2.91 -0.02 0.31 16 39 H 0.22 0.45 8.06 -2.91 -0.02 0.42 16 40 H 0.06 1.96 7.05 -2.39 -0.02 1.94 16 41 H 0.09 2.18 8.08 -2.39 -0.02 2.16 16 42 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 43 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 44 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 45 H 0.11 3.75 8.06 -2.91 -0.02 3.73 16 46 H 0.10 4.38 7.37 -2.91 -0.02 4.36 16 Total: -1.00 -74.13 391.74 0.84 -73.29 By element: Atomic # 1 Polarization: 42.11 SS G_CDS: -0.45 Total: 41.66 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 6.79 Total: -2.49 kcal Atomic # 7 Polarization: -130.08 SS G_CDS: -7.46 Total: -137.54 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.06 Total: -22.97 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -74.13 0.84 -73.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755721756.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.372 kcal (2) G-P(sol) polarization free energy of solvation -74.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds