Wall clock time and date at job start Sat Apr 11 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99879 * 2 1 4 4 H 1.48496 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46943 * 299.99520 * 3 2 1 6 6 H 1.48502 * 109.46831 * 59.99384 * 3 2 1 7 7 C 1.38810 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99830 * 196.44873 * 7 2 1 9 9 N 1.36932 * 119.99913 * 16.45580 * 7 2 1 10 10 C 1.46970 * 120.59368 * 205.06190 * 9 7 2 11 11 C 1.53370 * 108.63640 * 235.24897 * 10 9 7 12 12 N 1.46971 * 108.63128 * 310.57273 * 11 10 9 13 13 C 1.34771 * 120.59041 * 235.20440 * 12 11 10 14 14 O 1.21553 * 120.00774 * 5.77444 * 13 12 11 15 15 C 1.47847 * 119.99771 * 185.77310 * 13 12 11 16 16 C 1.39605 * 120.14332 * 36.09627 * 15 13 12 17 17 C 1.37933 * 119.84985 * 179.97438 * 16 15 13 18 18 C 1.38376 * 120.15039 * 0.02562 * 17 16 15 19 19 C 1.38342 * 120.28894 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.92309 * 179.97438 * 19 18 17 21 21 N 1.46500 * 109.46910 * 90.00109 * 20 19 18 22 22 C 1.36888 * 126.39712 * 89.99792 * 21 20 19 23 23 C 1.34669 * 106.81559 * 179.97438 * 22 21 20 24 24 N 1.34123 * 108.02356 * 0.02562 * 23 22 21 25 25 C 1.30501 * 109.25651 * 359.97438 * 24 23 22 26 26 C 1.37978 * 120.14824 * 0.25094 * 19 18 17 27 27 C 1.46962 * 118.81185 * 55.47972 * 12 11 10 28 28 C 1.46962 * 120.59704 * 25.08035 * 9 7 2 29 29 H 0.96992 * 120.00077 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.61114 * 115.50038 * 10 9 7 31 31 H 1.09008 * 109.74683 * 355.07436 * 10 9 7 32 32 H 1.09004 * 109.60875 * 190.83078 * 11 10 9 33 33 H 1.08997 * 109.75266 * 70.39768 * 11 10 9 34 34 H 1.07999 * 120.06841 * 359.97282 * 16 15 13 35 35 H 1.08002 * 119.92431 * 179.97438 * 17 16 15 36 36 H 1.07996 * 119.86066 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.47499 * 330.00138 * 20 19 18 38 38 H 1.09006 * 109.46720 * 209.99602 * 20 19 18 39 39 H 1.07991 * 126.59140 * 359.97438 * 22 21 20 40 40 H 1.07999 * 125.98861 * 180.02562 * 23 22 21 41 41 H 1.08002 * 125.65482 * 180.02562 * 25 24 23 42 42 H 1.07996 * 120.07168 * 179.72684 * 26 19 18 43 43 H 1.09006 * 109.61003 * 64.26730 * 27 12 11 44 44 H 1.09001 * 109.60846 * 184.77554 * 27 12 11 45 45 H 1.09003 * 109.61321 * 244.49859 * 28 9 7 46 46 H 1.08997 * 109.61174 * 5.00987 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0571 -1.2211 0.2654 9 7 1.3677 -2.3639 -0.3349 10 6 1.8574 -3.6588 0.1585 11 6 2.1003 -4.5808 -1.0428 12 7 0.9088 -4.5552 -1.9029 13 6 0.2769 -5.6987 -2.2337 14 8 0.6263 -6.7518 -1.7372 15 6 -0.8413 -5.6723 -3.2004 16 6 -0.8102 -4.7934 -4.2846 17 6 -1.8565 -4.7742 -5.1832 18 6 -2.9356 -5.6232 -5.0116 19 6 -2.9727 -6.4966 -3.9394 20 6 -4.1523 -7.4173 -3.7602 21 7 -3.8996 -8.6773 -4.4635 22 6 -3.2972 -9.7911 -3.9435 23 6 -3.2682 -10.7125 -4.9252 24 7 -3.8368 -10.1759 -6.0150 25 6 -4.2176 -8.9571 -5.7458 26 6 -1.9348 -6.5227 -3.0306 27 6 0.4224 -3.2608 -2.4008 28 6 0.1763 -2.3382 -1.1949 29 1 -0.4850 0.8400 -0.0004 30 1 1.1122 -4.1048 0.8172 31 1 2.7899 -3.5161 0.7046 32 1 2.2773 -5.5980 -0.6933 33 1 2.9656 -4.2317 -1.6061 34 1 0.0313 -4.1300 -4.4194 35 1 -1.8338 -4.0945 -6.0222 36 1 -3.7525 -5.6040 -5.7178 37 1 -5.0463 -6.9462 -4.1686 38 1 -4.2994 -7.6168 -2.6987 39 1 -2.9180 -9.9083 -2.9392 40 1 -2.8588 -11.7090 -4.8485 41 1 -4.7063 -8.2836 -6.4343 42 1 -1.9671 -7.2019 -2.1916 43 1 1.1706 -2.8170 -3.0577 44 1 -0.5088 -3.4060 -2.9484 45 1 -0.6886 -2.6902 -0.6326 46 1 -0.0008 -1.3211 -1.5444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266708212.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:36 Heat of formation + Delta-G solvation = 102.151412 kcal Electronic energy + Delta-G solvation = -29027.891513 eV Core-core repulsion = 25113.127449 eV Total energy + Delta-G solvation = -3914.764065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.20674 -40.42692 -38.68119 -36.85208 -34.95130 -33.96330 -32.04542 -31.25909 -30.92825 -30.10011 -29.55273 -27.15378 -26.70207 -24.49661 -23.39491 -22.73662 -22.22688 -21.42305 -21.16116 -20.45592 -19.04028 -17.78498 -17.29202 -16.65223 -16.31029 -16.04833 -15.41176 -15.36513 -14.93971 -14.71319 -14.37274 -14.29347 -14.09356 -13.74780 -13.60547 -13.50670 -13.42578 -13.39819 -13.19337 -12.77673 -12.68759 -12.36596 -11.94489 -11.66105 -11.50494 -11.28472 -10.93599 -10.79585 -10.55930 -10.29873 -10.19298 -10.09237 -9.93959 -9.85485 -9.61445 -9.16407 -8.98518 -8.68788 -8.67271 -8.34901 -6.82899 -5.91812 -3.35406 0.73371 1.01712 1.90151 2.56933 2.94827 3.03965 3.25687 3.28275 3.36901 3.38801 3.68464 4.21053 4.25612 4.37689 4.52447 4.56079 4.69408 4.74324 4.79823 4.95424 5.04299 5.20751 5.23374 5.27456 5.31346 5.49458 5.55499 5.68488 5.70664 5.77547 5.83116 5.99071 6.00594 6.07794 6.13023 6.14736 6.19054 6.27435 6.34036 6.56896 6.59961 6.70021 6.83931 6.98047 7.13225 7.43629 7.63296 7.77675 7.90789 8.27051 8.38988 9.04641 9.67212 10.21928 11.15079 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.002463 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.918146 B =11366.704839 C =12036.622535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.001 4.001 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.593 5.593 10 C 0.132 3.868 11 C 0.095 3.905 12 N -0.588 5.588 13 C 0.551 3.449 14 O -0.553 6.553 15 C -0.118 4.118 16 C -0.076 4.076 17 C -0.127 4.127 18 C -0.081 4.081 19 C -0.130 4.130 20 C 0.149 3.851 21 N -0.454 5.454 22 C -0.049 4.049 23 C -0.034 4.034 24 N -0.498 5.498 25 C 0.180 3.820 26 C -0.045 4.045 27 C 0.065 3.935 28 C 0.153 3.847 29 H 0.255 0.745 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.201 0.799 42 H 0.130 0.870 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.022 0.978 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.576 -11.664 -10.278 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.199 4.199 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.315 5.315 10 C 0.004 3.996 11 C -0.028 4.028 12 N -0.319 5.319 13 C 0.339 3.661 14 O -0.433 6.433 15 C -0.121 4.121 16 C -0.095 4.095 17 C -0.144 4.144 18 C -0.099 4.099 19 C -0.131 4.131 20 C 0.027 3.973 21 N -0.136 5.136 22 C -0.182 4.182 23 C -0.181 4.181 24 N -0.216 5.216 25 C -0.102 4.102 26 C -0.064 4.064 27 C -0.058 4.058 28 C 0.027 3.973 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.190 0.810 40 H 0.185 0.815 41 H 0.218 0.782 42 H 0.148 0.852 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.040 0.960 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.594 -12.308 -10.645 18.403 hybrid contribution 0.565 1.501 0.847 1.813 sum -8.029 -10.808 -9.798 16.651 Atomic orbital electron populations 1.69976 1.05244 1.25550 1.54307 1.25015 0.95384 0.98478 1.01055 0.86163 0.79295 0.83623 0.77354 1.20234 1.21474 1.21672 1.19305 0.92677 0.84480 1.41452 0.91193 1.44057 1.31531 1.01198 1.54748 1.21285 0.98443 0.87085 0.92744 1.22250 0.86028 1.01312 0.93249 1.47991 1.28836 1.06372 1.48672 1.18299 0.82400 0.83896 0.81542 1.90730 1.66876 1.30560 1.55124 1.19973 0.96145 0.98789 0.97186 1.21678 0.99032 0.95796 0.92950 1.21109 0.93957 0.99764 0.99620 1.21145 0.98183 0.94486 0.96117 1.19770 0.96863 0.99233 0.97252 1.20731 0.96314 0.81261 0.98949 1.45642 1.44372 1.11875 1.11745 1.22794 1.05898 0.87819 1.01673 1.22281 1.05581 1.00627 0.89641 1.70275 1.15872 1.07136 1.28287 1.24941 1.04721 0.95476 0.85075 1.21009 0.91321 0.96002 0.98097 1.23272 0.98924 0.83594 1.00027 1.21419 0.88314 0.99494 0.88089 0.93497 0.95787 0.91407 0.89867 0.91686 0.84346 0.84970 0.85612 0.87696 0.87929 0.80971 0.81500 0.78213 0.85201 0.91603 0.89841 0.96014 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.77 10.90 55.49 0.60 -24.17 16 2 C 0.00 -0.04 4.97 -17.43 -0.09 -0.13 16 3 Si 0.91 20.63 29.58 -169.99 -5.03 15.60 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.47 9.62 -15.06 -0.14 -6.61 16 8 H 0.07 1.78 7.87 -52.49 -0.41 1.37 16 9 N -0.59 -14.06 2.98 -171.76 -0.51 -14.58 16 10 C 0.13 2.68 6.67 -3.59 -0.02 2.66 16 11 C 0.10 1.72 6.60 -3.59 -0.02 1.69 16 12 N -0.59 -10.45 2.94 -173.32 -0.51 -10.96 16 13 C 0.55 9.66 7.37 -12.33 -0.09 9.57 16 14 O -0.55 -11.12 16.27 5.32 0.09 -11.04 16 15 C -0.12 -1.68 5.29 -104.96 -0.55 -2.24 16 16 C -0.08 -0.91 7.35 -39.18 -0.29 -1.20 16 17 C -0.13 -1.22 10.03 -39.64 -0.40 -1.61 16 18 C -0.08 -0.69 9.69 -39.49 -0.38 -1.08 16 19 C -0.13 -1.23 5.46 -104.68 -0.57 -1.80 16 20 C 0.15 1.04 6.27 -5.19 -0.03 1.00 16 21 N -0.45 -4.10 2.73 -119.86 -0.33 -4.43 16 22 C -0.05 -0.48 11.58 -16.56 -0.19 -0.68 16 23 C -0.03 -0.38 11.87 -17.81 -0.21 -0.59 16 24 N -0.50 -6.20 11.25 -14.67 -0.17 -6.36 16 25 C 0.18 1.75 12.56 -90.37 -1.14 0.61 16 26 C -0.04 -0.55 9.26 -39.19 -0.36 -0.92 16 27 C 0.07 1.13 5.01 -3.37 -0.02 1.11 16 28 C 0.15 3.39 5.56 -3.37 -0.02 3.37 16 29 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 1.31 7.93 -51.92 -0.41 0.90 16 32 H 0.08 1.46 6.99 -51.93 -0.36 1.10 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.14 1.61 6.12 -52.49 -0.32 1.29 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.10 0.46 8.08 -51.93 -0.42 0.04 16 38 H 0.10 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.17 1.52 8.06 -52.49 -0.42 1.09 16 41 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.13 1.59 8.02 -52.49 -0.42 1.17 16 43 H 0.07 1.11 8.11 -51.93 -0.42 0.69 16 44 H 0.08 1.25 4.37 -51.93 -0.23 1.03 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.11 2.71 5.69 -51.93 -0.30 2.41 16 LS Contribution 377.44 15.07 5.69 5.69 Total: -1.00 -33.26 377.44 -10.93 -44.19 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.23 Total: 2.88 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -4.53 Total: 3.17 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.91 Total: -60.49 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.26 -10.93 -44.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266708212.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.344 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds