Wall clock time and date at job start Sat Apr 11 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48499 * 109.47328 * 270.00011 * 3 2 1 5 5 H 1.48500 * 109.47083 * 30.00531 * 3 2 1 6 6 H 1.48504 * 109.47168 * 150.00484 * 3 2 1 7 7 C 1.37881 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00520 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99661 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.46867 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00018 * 266.68066 * 10 9 7 12 12 C 1.50705 * 109.46819 * 269.99783 * 11 10 9 13 13 C 1.38668 * 120.42425 * 269.72277 * 12 11 10 14 14 C 1.38623 * 118.42467 * 179.78900 * 13 12 11 15 15 C 1.38232 * 119.15616 * 0.50773 * 14 13 12 16 16 N 1.31854 * 120.76740 * 359.73092 * 15 14 13 17 17 C 1.31887 * 121.72244 * 359.97438 * 16 15 14 18 18 C 1.34781 * 119.99660 * 86.67990 * 10 9 7 19 19 O 1.21283 * 119.99359 * 174.52946 * 18 10 9 20 20 C 1.50696 * 120.00263 * 354.80754 * 18 10 9 21 21 H 1.09000 * 109.46725 * 327.35084 * 20 18 10 22 22 C 1.53103 * 109.46330 * 207.37109 * 20 18 10 23 23 C 1.53357 * 109.51326 * 169.71953 * 22 20 18 24 24 C 1.50826 * 108.38661 * 49.92363 * 23 22 20 25 25 N 1.34325 * 128.03208 * 163.35440 * 24 23 22 26 26 H 0.97000 * 126.09127 * 0.25875 * 25 24 23 27 27 N 1.40296 * 107.81764 * 180.21635 * 25 24 23 28 28 C 1.31070 * 108.26753 * 359.93444 * 27 25 24 29 29 C 1.35747 * 124.12216 * 343.48519 * 24 23 22 30 30 C 1.50838 * 124.11130 * 359.77201 * 29 24 23 31 31 H 0.96996 * 119.99914 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.47306 * 59.99755 * 9 7 2 33 33 H 1.09001 * 109.46871 * 299.99941 * 9 7 2 34 34 H 1.08997 * 109.47270 * 29.99585 * 11 10 9 35 35 H 1.09002 * 109.47233 * 150.00533 * 11 10 9 36 36 H 1.08007 * 120.78421 * 0.02562 * 13 12 11 37 37 H 1.07997 * 120.42170 * 180.26196 * 14 13 12 38 38 H 1.08005 * 119.61417 * 179.70736 * 15 14 13 39 39 H 1.07999 * 119.61803 * 180.02562 * 17 16 15 40 40 H 1.08992 * 109.46878 * 289.72034 * 22 20 18 41 41 H 1.08996 * 109.46608 * 49.70325 * 22 20 18 42 42 H 1.09000 * 109.65946 * 290.21097 * 23 22 20 43 43 H 1.09003 * 109.73233 * 169.68186 * 23 22 20 44 44 H 1.07996 * 125.96311 * 180.02562 * 28 27 25 45 45 H 1.08994 * 109.68433 * 223.75082 * 30 29 24 46 46 H 1.08998 * 109.71713 * 103.20855 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.3137 -3.2412 1.2656 12 6 5.7587 -2.9968 1.6169 13 6 6.7436 -3.8740 1.1887 14 6 8.0598 -3.6068 1.5319 15 6 8.3436 -2.4885 2.2932 16 7 7.3805 -1.6786 2.6872 17 6 6.1183 -1.8985 2.3745 18 6 4.1602 -3.2335 -1.1662 19 8 4.6572 -4.3398 -1.1743 20 6 3.7278 -2.5922 -2.4596 21 1 2.8575 -1.9613 -2.2790 22 6 3.3669 -3.6812 -3.4733 23 6 2.6877 -3.0427 -4.6910 24 6 3.5394 -1.8900 -5.1609 25 7 3.4958 -1.2576 -6.3451 26 1 2.8929 -1.4581 -7.0781 27 7 4.4767 -0.2547 -6.3326 28 6 5.0853 -0.2897 -5.1723 29 6 4.5139 -1.3097 -4.4150 30 6 4.8734 -1.7360 -3.0135 31 1 -0.4850 0.8400 0.0004 32 1 3.8752 -0.6805 0.8888 33 1 3.8745 -0.6801 -0.8912 34 1 3.6756 -2.8419 2.0539 35 1 4.1404 -4.3127 1.1655 36 1 6.4915 -4.7428 0.5985 37 1 8.8530 -4.2662 1.2119 38 1 9.3660 -2.2759 2.5688 39 1 5.3568 -1.2125 2.7150 40 1 4.2733 -4.1960 -3.7917 41 1 2.6864 -4.3964 -3.0113 42 1 1.6993 -2.6785 -4.4106 43 1 2.5945 -3.7795 -5.4889 44 1 5.8891 0.3594 -4.8579 45 1 5.0104 -0.8556 -2.3857 46 1 5.7931 -2.3207 -3.0315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270233969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:42 Heat of formation + Delta-G solvation = 65.937827 kcal Electronic energy + Delta-G solvation = -30074.836297 eV Core-core repulsion = 26158.501893 eV Total energy + Delta-G solvation = -3916.334404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41085 -40.16676 -39.22856 -36.00307 -35.28123 -33.08234 -32.47483 -32.16766 -31.42713 -29.40580 -29.33532 -28.16413 -26.10859 -23.76210 -23.42424 -22.78922 -22.37610 -21.84417 -21.23283 -18.79318 -18.28376 -17.20567 -17.13893 -16.91742 -16.56537 -15.88089 -15.64913 -15.22306 -14.91244 -14.42538 -14.26832 -14.16264 -13.74165 -13.56010 -13.36975 -13.22359 -13.04625 -12.83776 -12.76836 -12.52073 -12.50522 -12.02832 -11.86525 -11.66070 -11.49055 -11.28396 -11.06115 -10.73182 -10.59156 -10.49622 -10.33215 -10.29314 -9.73233 -9.64014 -9.39152 -9.31633 -9.18635 -8.80430 -8.74164 -8.13633 -7.88361 -6.27313 -4.29415 1.22771 1.46156 1.97942 2.90543 2.93140 3.16580 3.22456 3.23850 3.27143 3.66664 4.11881 4.23216 4.59079 4.71314 4.84155 4.94033 4.97929 5.02998 5.06909 5.09146 5.19212 5.24188 5.32959 5.39069 5.54810 5.57832 5.69698 5.79539 5.81533 5.85494 5.93548 6.01409 6.04594 6.11085 6.16320 6.29671 6.34592 6.35822 6.44184 6.53237 6.66414 6.68491 6.79015 6.86155 7.21922 7.36931 7.37942 7.75904 8.02491 8.11094 8.32225 8.75368 8.83862 9.32352 10.84769 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008368 B = 0.004861 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3345.256677 B = 5759.298897 C = 7357.544037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.081 3.919 3 Si 0.864 3.136 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.206 3.794 10 N -0.585 5.585 11 C 0.160 3.840 12 C -0.145 4.145 13 C -0.053 4.053 14 C -0.180 4.180 15 C 0.090 3.910 16 N -0.490 5.490 17 C 0.110 3.890 18 C 0.530 3.470 19 O -0.568 6.568 20 C -0.111 4.111 21 H 0.121 0.879 22 C -0.088 4.088 23 C -0.058 4.058 24 C 0.095 3.905 25 N -0.473 5.473 26 H 0.435 0.565 27 N -0.305 5.305 28 C 0.059 3.941 29 C -0.230 4.230 30 C -0.026 4.026 31 H 0.267 0.733 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.181 0.819 45 H 0.076 0.924 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.014 -5.763 -4.503 12.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.690 3.310 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.098 0.902 9 C 0.085 3.915 10 N -0.314 5.314 11 C 0.036 3.964 12 C -0.148 4.148 13 C -0.080 4.080 14 C -0.200 4.200 15 C -0.068 4.068 16 N -0.199 5.199 17 C -0.047 4.047 18 C 0.319 3.681 19 O -0.449 6.449 20 C -0.132 4.132 21 H 0.139 0.861 22 C -0.126 4.126 23 C -0.097 4.097 24 C -0.035 4.035 25 N -0.180 5.180 26 H 0.278 0.722 27 N -0.128 5.128 28 C -0.126 4.126 29 C -0.241 4.241 30 C -0.065 4.065 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.167 0.833 39 H 0.173 0.827 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.198 0.802 45 H 0.094 0.906 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.251 -4.853 -5.112 12.441 hybrid contribution -0.211 -0.003 -0.115 0.240 sum 10.040 -4.857 -5.227 12.317 Atomic orbital electron populations 1.69877 1.06212 1.27261 1.49183 1.24835 0.94666 0.98791 0.94072 0.87027 0.80642 0.84161 0.79155 1.19700 1.20861 1.18653 1.21336 0.88889 0.94984 1.52805 0.90212 1.19904 0.95926 0.77822 0.97811 1.47954 1.63346 1.15818 1.04299 1.20172 0.89738 0.99118 0.87322 1.21440 0.98156 0.96391 0.98852 1.21683 0.92138 0.98774 0.95356 1.22120 0.97401 0.99572 1.00928 1.22694 0.98522 0.90984 0.94560 1.67695 1.00998 1.29807 1.21359 1.22776 0.93061 0.94877 0.93970 1.20421 0.77217 0.85080 0.85392 1.90564 1.45753 1.21009 1.87526 1.21443 1.01394 0.98263 0.92105 0.86098 1.21288 1.01048 0.96871 0.93410 1.20432 0.98082 0.92910 0.98309 1.21009 0.98576 0.96933 0.86979 1.45966 1.30770 1.27429 1.13856 0.72157 1.77427 1.04171 1.09371 1.21795 1.23557 0.99758 0.98075 0.91247 1.19824 1.02924 1.02424 0.98936 1.19869 0.96909 0.98881 0.90831 0.92329 0.94811 0.94913 0.88940 0.89638 0.84278 0.85232 0.83297 0.82733 0.91039 0.90526 0.89008 0.90190 0.80216 0.90591 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 13.96 55.43 0.77 -23.99 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.86 19.37 27.47 -169.99 -4.67 14.70 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 7 C -0.54 -13.25 8.87 -34.44 -0.31 -13.55 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 C 0.21 4.23 3.85 -5.19 -0.02 4.21 16 10 N -0.59 -10.82 2.45 -176.43 -0.43 -11.25 16 11 C 0.16 2.62 5.50 -5.19 -0.03 2.59 16 12 C -0.15 -2.21 5.48 -104.48 -0.57 -2.79 16 13 C -0.05 -0.75 9.73 -39.28 -0.38 -1.13 16 14 C -0.18 -2.22 10.11 -39.44 -0.40 -2.61 16 15 C 0.09 1.15 11.18 -17.54 -0.20 0.95 16 16 N -0.49 -7.51 10.36 -13.25 -0.14 -7.64 16 17 C 0.11 1.70 10.86 -17.55 -0.19 1.51 16 18 C 0.53 9.71 6.68 -10.99 -0.07 9.64 16 19 O -0.57 -10.95 15.26 5.55 0.08 -10.87 16 20 C -0.11 -1.86 1.66 -91.53 -0.15 -2.01 16 21 H 0.12 2.32 6.19 -51.93 -0.32 2.00 16 22 C -0.09 -1.25 4.62 -26.49 -0.12 -1.38 16 23 C -0.06 -0.71 6.30 -27.64 -0.17 -0.89 16 24 C 0.09 1.32 7.08 -82.33 -0.58 0.74 16 25 N -0.47 -6.16 7.34 33.48 0.25 -5.92 16 26 H 0.44 4.17 8.96 -182.45 -1.64 2.54 16 27 N -0.31 -4.60 12.71 30.54 0.39 -4.22 16 28 C 0.06 0.86 12.00 -17.48 -0.21 0.65 16 29 C -0.23 -3.49 5.91 -105.05 -0.62 -4.11 16 30 C -0.03 -0.41 5.41 -27.62 -0.15 -0.56 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.03 0.69 7.10 -51.93 -0.37 0.32 16 33 H 0.03 0.67 4.77 -51.93 -0.25 0.42 16 34 H 0.09 1.46 8.02 -51.93 -0.42 1.05 16 35 H 0.09 1.38 7.46 -51.93 -0.39 0.99 16 36 H 0.14 1.99 7.49 -52.48 -0.39 1.60 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.15 1.45 8.06 -52.48 -0.42 1.02 16 39 H 0.16 2.27 8.06 -52.49 -0.42 1.84 16 40 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 41 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.18 2.11 8.06 -52.49 -0.42 1.69 16 45 H 0.08 1.21 6.54 -51.93 -0.34 0.87 16 46 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -30.79 376.79 -9.84 -40.63 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -7.50 Total: 9.64 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -4.28 Total: -6.76 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.84 Total: -53.03 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.67 Total: 14.70 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.79 -9.84 -40.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270233969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.572 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds