Wall clock time and date at job start Sat Apr 11 2020 06:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48499 * 109.47328 * 270.00011 * 3 2 1 5 5 H 1.48500 * 109.47083 * 30.00531 * 3 2 1 6 6 H 1.48504 * 109.47168 * 150.00484 * 3 2 1 7 7 C 1.37881 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00520 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99661 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.46867 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00018 * 266.68066 * 10 9 7 12 12 C 1.50705 * 109.46819 * 269.99783 * 11 10 9 13 13 C 1.38668 * 120.42425 * 269.72277 * 12 11 10 14 14 C 1.38623 * 118.42467 * 179.78900 * 13 12 11 15 15 C 1.38232 * 119.15616 * 0.50773 * 14 13 12 16 16 N 1.31854 * 120.76740 * 359.73092 * 15 14 13 17 17 C 1.31887 * 121.72244 * 359.97438 * 16 15 14 18 18 C 1.34781 * 119.99660 * 86.67990 * 10 9 7 19 19 O 1.21283 * 119.99359 * 174.52946 * 18 10 9 20 20 C 1.50696 * 120.00263 * 354.80754 * 18 10 9 21 21 H 1.09000 * 109.46725 * 327.35084 * 20 18 10 22 22 C 1.53103 * 109.46330 * 207.37109 * 20 18 10 23 23 C 1.53357 * 109.51326 * 169.71953 * 22 20 18 24 24 C 1.50826 * 108.38661 * 49.92363 * 23 22 20 25 25 N 1.34325 * 128.03208 * 163.35440 * 24 23 22 26 26 H 0.97000 * 126.09127 * 0.25875 * 25 24 23 27 27 N 1.40296 * 107.81764 * 180.21635 * 25 24 23 28 28 C 1.31070 * 108.26753 * 359.93444 * 27 25 24 29 29 C 1.35747 * 124.12216 * 343.48519 * 24 23 22 30 30 C 1.50838 * 124.11130 * 359.77201 * 29 24 23 31 31 H 0.96996 * 119.99914 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.47306 * 59.99755 * 9 7 2 33 33 H 1.09001 * 109.46871 * 299.99941 * 9 7 2 34 34 H 1.08997 * 109.47270 * 29.99585 * 11 10 9 35 35 H 1.09002 * 109.47233 * 150.00533 * 11 10 9 36 36 H 1.08007 * 120.78421 * 0.02562 * 13 12 11 37 37 H 1.07997 * 120.42170 * 180.26196 * 14 13 12 38 38 H 1.08005 * 119.61417 * 179.70736 * 15 14 13 39 39 H 1.07999 * 119.61803 * 180.02562 * 17 16 15 40 40 H 1.08992 * 109.46878 * 289.72034 * 22 20 18 41 41 H 1.08996 * 109.46608 * 49.70325 * 22 20 18 42 42 H 1.09000 * 109.65946 * 290.21097 * 23 22 20 43 43 H 1.09003 * 109.73233 * 169.68186 * 23 22 20 44 44 H 1.07996 * 125.96311 * 180.02562 * 28 27 25 45 45 H 1.08994 * 109.68433 * 223.75082 * 30 29 24 46 46 H 1.08998 * 109.71713 * 103.20855 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.3137 -3.2412 1.2656 12 6 5.7587 -2.9968 1.6169 13 6 6.7436 -3.8740 1.1887 14 6 8.0598 -3.6068 1.5319 15 6 8.3436 -2.4885 2.2932 16 7 7.3805 -1.6786 2.6872 17 6 6.1183 -1.8985 2.3745 18 6 4.1602 -3.2335 -1.1662 19 8 4.6572 -4.3398 -1.1743 20 6 3.7278 -2.5922 -2.4596 21 1 2.8575 -1.9613 -2.2790 22 6 3.3669 -3.6812 -3.4733 23 6 2.6877 -3.0427 -4.6910 24 6 3.5394 -1.8900 -5.1609 25 7 3.4958 -1.2576 -6.3451 26 1 2.8929 -1.4581 -7.0781 27 7 4.4767 -0.2547 -6.3326 28 6 5.0853 -0.2897 -5.1723 29 6 4.5139 -1.3097 -4.4150 30 6 4.8734 -1.7360 -3.0135 31 1 -0.4850 0.8400 0.0004 32 1 3.8752 -0.6805 0.8888 33 1 3.8745 -0.6801 -0.8912 34 1 3.6756 -2.8419 2.0539 35 1 4.1404 -4.3127 1.1655 36 1 6.4915 -4.7428 0.5985 37 1 8.8530 -4.2662 1.2119 38 1 9.3660 -2.2759 2.5688 39 1 5.3568 -1.2125 2.7150 40 1 4.2733 -4.1960 -3.7917 41 1 2.6864 -4.3964 -3.0113 42 1 1.6993 -2.6785 -4.4106 43 1 2.5945 -3.7795 -5.4889 44 1 5.8891 0.3594 -4.8579 45 1 5.0104 -0.8556 -2.3857 46 1 5.7931 -2.3207 -3.0315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270233969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:41 Heat of formation + Delta-G solvation = 47.835224 kcal Electronic energy + Delta-G solvation = -30075.621284 eV Core-core repulsion = 26158.501893 eV Total energy + Delta-G solvation = -3917.119391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.52490 -41.37818 -40.52965 -37.25585 -36.77861 -34.74861 -33.75545 -33.41112 -32.57908 -30.53292 -30.51286 -29.89263 -27.40979 -25.07822 -24.60558 -24.13198 -23.74863 -22.94782 -22.41687 -20.06192 -19.61486 -19.01549 -18.34879 -18.13348 -17.85676 -17.07263 -17.01828 -16.53741 -16.21879 -15.91054 -15.49422 -15.33185 -14.94797 -14.79680 -14.68338 -14.53016 -14.32066 -14.18241 -13.95862 -13.88153 -13.71425 -13.56075 -13.25196 -12.93521 -12.78708 -12.65872 -12.58736 -12.32947 -12.02834 -11.78504 -11.73181 -11.66213 -11.49193 -10.83464 -10.77832 -10.52079 -10.46127 -10.42856 -9.92730 -9.42339 -9.26484 -8.28213 -6.33048 0.15150 0.37035 0.89332 1.38341 1.42123 1.48047 1.72336 1.81409 1.95266 2.30514 2.34286 2.97656 3.06682 3.55965 3.57119 3.65634 3.80884 3.89698 3.91001 3.95752 4.12011 4.13868 4.17437 4.21321 4.45555 4.49967 4.58364 4.59537 4.66365 4.69473 4.75155 4.77015 4.81477 4.85726 4.91401 4.96829 5.01775 5.17603 5.24090 5.33010 5.37776 5.41664 5.47685 5.67647 5.69703 5.80733 6.21218 6.40829 6.60944 6.69590 6.74067 7.03734 7.27547 7.37729 8.87218 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008368 B = 0.004861 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3345.256677 B = 5759.298897 C = 7357.544037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.029 3.971 3 Si 0.921 3.079 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.239 1.239 7 C -0.529 4.529 8 H 0.040 0.960 9 C 0.218 3.782 10 N -0.589 5.589 11 C 0.160 3.840 12 C -0.154 4.154 13 C -0.062 4.062 14 C -0.169 4.169 15 C 0.090 3.910 16 N -0.510 5.510 17 C 0.098 3.902 18 C 0.526 3.474 19 O -0.578 6.578 20 C -0.108 4.108 21 H 0.093 0.907 22 C -0.084 4.084 23 C -0.052 4.052 24 C 0.096 3.904 25 N -0.463 5.463 26 H 0.449 0.551 27 N -0.326 5.326 28 C 0.054 3.946 29 C -0.254 4.254 30 C -0.016 4.016 31 H 0.266 0.734 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.135 0.865 37 H 0.164 0.836 38 H 0.184 0.816 39 H 0.154 0.846 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.202 0.798 45 H 0.069 0.931 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.519 -5.714 -5.219 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.170 4.170 3 Si 0.745 3.255 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.162 1.162 7 C -0.568 4.568 8 H 0.059 0.941 9 C 0.096 3.904 10 N -0.318 5.318 11 C 0.037 3.963 12 C -0.157 4.157 13 C -0.088 4.088 14 C -0.189 4.189 15 C -0.067 4.067 16 N -0.219 5.219 17 C -0.058 4.058 18 C 0.316 3.684 19 O -0.459 6.459 20 C -0.130 4.130 21 H 0.111 0.889 22 C -0.122 4.122 23 C -0.090 4.090 24 C -0.035 4.035 25 N -0.172 5.172 26 H 0.296 0.704 27 N -0.149 5.149 28 C -0.131 4.131 29 C -0.266 4.266 30 C -0.055 4.055 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.153 0.847 37 H 0.181 0.819 38 H 0.201 0.799 39 H 0.171 0.829 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.133 0.867 44 H 0.219 0.781 45 H 0.087 0.913 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.767 -4.822 -5.837 14.844 hybrid contribution -0.973 -0.158 0.126 0.994 sum 11.794 -4.980 -5.712 14.019 Atomic orbital electron populations 1.70018 1.08039 1.28040 1.51568 1.25566 0.95215 1.02235 0.94010 0.86097 0.80239 0.79806 0.79350 1.19387 1.21301 1.16237 1.21454 0.90906 0.93255 1.51144 0.94142 1.19652 0.93141 0.79257 0.98318 1.47967 1.63318 1.15233 1.05310 1.20205 0.91020 0.98689 0.86392 1.21246 0.97376 0.97174 0.99901 1.21762 0.93014 0.98512 0.95534 1.22452 0.97242 0.99593 0.99600 1.23304 0.99474 0.90390 0.93566 1.67721 1.01201 1.30883 1.22106 1.22772 0.93506 0.95061 0.94502 1.20736 0.76876 0.84981 0.85814 1.90548 1.46317 1.21314 1.87718 1.21408 1.00695 0.98723 0.92132 0.88907 1.21256 1.01267 0.96103 0.93590 1.20437 0.97141 0.93119 0.98340 1.21222 0.98211 0.96985 0.87075 1.45980 1.30499 1.26695 1.14051 0.70445 1.77388 1.04946 1.10265 1.22252 1.23943 1.00135 0.98099 0.90900 1.19931 1.04188 1.03504 0.98956 1.19738 0.96371 0.98284 0.91114 0.92457 0.94016 0.94086 0.89126 0.89877 0.84703 0.81888 0.79915 0.82907 0.90655 0.91075 0.89275 0.86702 0.78105 0.91267 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.84 13.96 21.45 0.30 -53.54 16 2 C 0.03 1.53 5.47 84.66 0.46 1.99 16 3 Si 0.92 39.76 27.47 68.60 1.88 41.65 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.24 -9.37 6.54 99.48 0.65 -8.71 16 7 C -0.53 -26.53 8.87 25.60 0.23 -26.31 16 8 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 9 C 0.22 8.94 3.85 85.64 0.33 9.27 16 10 N -0.59 -21.98 2.45 -830.48 -2.03 -24.01 16 11 C 0.16 5.30 5.50 85.64 0.47 5.77 16 12 C -0.15 -4.60 5.48 -19.77 -0.11 -4.70 16 13 C -0.06 -1.66 9.73 22.46 0.22 -1.44 16 14 C -0.17 -3.65 10.11 22.36 0.23 -3.43 16 15 C 0.09 2.03 11.18 84.69 0.95 2.97 16 16 N -0.51 -14.69 10.36 -195.83 -2.03 -16.71 16 17 C 0.10 2.94 10.86 84.67 0.92 3.86 16 18 C 0.53 19.34 6.68 87.65 0.59 19.93 16 19 O -0.58 -22.15 15.26 -3.04 -0.05 -22.19 16 20 C -0.11 -3.62 1.66 -11.38 -0.02 -3.64 16 21 H 0.09 3.65 6.19 -2.39 -0.01 3.63 16 22 C -0.08 -2.33 4.62 30.75 0.14 -2.19 16 23 C -0.05 -1.18 6.30 30.01 0.19 -0.99 16 24 C 0.10 2.53 7.08 41.64 0.29 2.82 16 25 N -0.46 -11.23 7.34 -47.99 -0.35 -11.59 16 26 H 0.45 7.70 8.96 -213.19 -1.91 5.79 16 27 N -0.33 -9.30 12.71 -57.28 -0.73 -10.03 16 28 C 0.05 1.49 12.00 85.06 1.02 2.51 16 29 C -0.25 -7.40 5.91 -20.14 -0.12 -7.52 16 30 C -0.02 -0.50 5.41 30.02 0.16 -0.33 16 31 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.04 1.67 7.10 -2.39 -0.02 1.65 16 33 H 0.04 1.65 4.77 -2.39 -0.01 1.63 16 34 H 0.09 2.96 8.02 -2.39 -0.02 2.94 16 35 H 0.08 2.75 7.46 -2.39 -0.02 2.73 16 36 H 0.14 3.73 7.49 -2.91 -0.02 3.70 16 37 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 39 H 0.15 4.45 8.06 -2.91 -0.02 4.42 16 40 H 0.07 2.05 8.11 -2.39 -0.02 2.03 16 41 H 0.07 2.05 8.10 -2.39 -0.02 2.03 16 42 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.20 4.34 8.06 -2.91 -0.02 4.32 16 45 H 0.07 2.15 6.54 -2.39 -0.02 2.13 16 46 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 Total: -1.00 -66.99 376.79 2.00 -64.99 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: -0.95 Total: 32.86 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 5.95 Total: -1.43 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -4.84 Total: -115.88 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.88 Total: 41.65 kcal Total: -66.99 2.00 -64.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270233969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.825 kcal (2) G-P(sol) polarization free energy of solvation -66.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds