Wall clock time and date at job start Sat Apr 11 2020 06:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86798 * 119.99645 * 2 1 4 4 H 1.48499 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47102 * 300.00124 * 3 2 1 6 6 H 1.48499 * 109.47159 * 59.99957 * 3 2 1 7 7 C 1.40220 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00072 * 196.88814 * 7 2 1 9 9 C 1.41113 * 120.00230 * 16.89112 * 7 2 1 10 10 C 1.40888 * 120.10187 * 205.46226 * 9 7 2 11 11 C 1.36321 * 119.88766 * 180.02562 * 10 9 7 12 12 C 1.40011 * 120.11010 * 359.97438 * 11 10 9 13 13 C 1.47637 * 119.89639 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99839 * 32.70667 * 13 12 11 15 15 N 1.34774 * 120.00073 * 212.70735 * 13 12 11 16 16 C 1.46931 * 120.63305 * 178.64295 * 15 13 12 17 17 C 1.53185 * 108.77619 * 233.58367 * 16 15 13 18 18 C 1.53040 * 109.31169 * 305.36442 * 17 16 15 19 19 C 1.53007 * 109.45907 * 181.38252 * 18 17 16 20 20 N 1.46495 * 109.47171 * 174.99571 * 19 18 17 21 21 C 1.35312 * 125.86776 * 125.00140 * 20 19 18 22 22 C 1.35353 * 106.17393 * 179.97438 * 21 20 19 23 23 N 1.33769 * 106.49757 * 0.02562 * 22 21 20 24 24 N 1.28630 * 108.88728 * 0.02562 * 23 22 21 25 25 C 1.53035 * 109.53889 * 61.36669 * 18 17 16 26 26 C 1.46930 * 120.63367 * 358.61311 * 15 13 12 27 27 C 1.40014 * 120.20462 * 0.28056 * 12 11 10 28 28 C 1.36313 * 120.10931 * 359.47490 * 27 12 11 29 29 H 0.96995 * 120.00492 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.05554 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.94261 * 180.02562 * 11 10 9 32 32 H 1.09001 * 109.58781 * 113.79354 * 16 15 13 33 33 H 1.09003 * 109.69831 * 353.44318 * 16 15 13 34 34 H 1.08994 * 109.50085 * 185.40644 * 17 16 15 35 35 H 1.09005 * 109.49906 * 65.31391 * 17 16 15 36 36 H 1.08998 * 109.45941 * 301.35238 * 18 17 16 37 37 H 1.09001 * 109.46714 * 54.99842 * 19 18 17 38 38 H 1.09003 * 109.47239 * 295.00075 * 19 18 17 39 39 H 1.07997 * 126.91049 * 359.97438 * 21 20 19 40 40 H 1.08006 * 126.74691 * 179.97438 * 22 21 20 41 41 H 1.08995 * 109.50007 * 58.58415 * 25 18 17 42 42 H 1.09010 * 109.49775 * 178.68487 * 25 18 17 43 43 H 1.08997 * 109.58832 * 246.21040 * 26 15 13 44 44 H 1.09006 * 109.57938 * 6.49109 * 26 15 13 45 45 H 1.08001 * 119.94332 * 179.72184 * 27 12 11 46 46 H 1.08007 * 120.05660 * 180.25596 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7004 1.3465 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0076 -1.2143 -0.0005 8 1 3.0527 -1.2347 0.2712 9 6 1.3477 -2.4099 -0.3561 10 6 1.8180 -3.6471 0.1268 11 6 1.1775 -4.7995 -0.2199 12 6 0.0538 -4.7549 -1.0540 13 6 -0.6359 -6.0058 -1.4270 14 8 -0.6742 -6.9355 -0.6443 15 7 -1.2230 -6.1173 -2.6350 16 6 -1.8875 -7.3661 -3.0321 17 6 -1.3128 -7.8247 -4.3759 18 6 -1.4439 -6.6912 -5.3958 19 6 -0.9022 -7.1576 -6.7486 20 7 -1.1360 -6.1172 -7.7532 21 6 -0.1936 -5.5497 -8.5410 22 6 -0.8418 -4.6470 -9.3137 23 7 -2.1319 -4.7053 -8.9649 24 7 -2.2732 -5.5853 -8.0374 25 6 -0.6441 -5.4773 -4.9175 26 6 -1.2113 -4.9920 -3.5798 27 6 -0.4139 -3.5282 -1.5407 28 6 0.2169 -2.3702 -1.1955 29 1 -0.4850 0.8400 0.0004 30 1 2.6844 -3.6825 0.7706 31 1 1.5369 -5.7483 0.1501 32 1 -2.9591 -7.1939 -3.1326 33 1 -1.7098 -8.1327 -2.2779 34 1 -1.8633 -8.6969 -4.7285 35 1 -0.2610 -8.0833 -4.2526 36 1 -2.4934 -6.4163 -5.5001 37 1 -1.4123 -8.0731 -7.0482 38 1 0.1678 -7.3484 -6.6654 39 1 0.8631 -5.7723 -8.5512 40 1 -0.4034 -4.0053 -10.0637 41 1 0.4013 -5.7580 -4.7890 42 1 -0.7188 -4.6786 -5.6555 43 1 -2.2278 -4.6262 -3.7249 44 1 -0.5872 -4.1902 -3.1852 45 1 -1.2784 -3.4991 -2.1875 46 1 -0.1472 -1.4240 -1.5681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270481725.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:48 Heat of formation + Delta-G solvation = 95.997333 kcal Electronic energy + Delta-G solvation = -29053.912771 eV Core-core repulsion = 25138.881845 eV Total energy + Delta-G solvation = -3915.030926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.41181 -40.03570 -37.94594 -37.02474 -35.11644 -33.97784 -32.69953 -31.40863 -31.18478 -29.93991 -29.55627 -28.12658 -26.01325 -24.25012 -23.49258 -22.89728 -22.11340 -21.29015 -20.98496 -20.34557 -18.86050 -17.75710 -17.55799 -16.74122 -16.50141 -15.79818 -15.42685 -15.16022 -14.91620 -14.89545 -14.46378 -14.26910 -14.00763 -13.75956 -13.56740 -13.09249 -12.99462 -12.90530 -12.45734 -12.36622 -11.99746 -11.92784 -11.81932 -11.52530 -11.39127 -11.27875 -11.22163 -11.08245 -10.97579 -10.76601 -10.71249 -10.49440 -10.18298 -10.03798 -9.55996 -9.52139 -9.39902 -8.94545 -8.32939 -7.69737 -7.56757 -7.04170 -4.62702 1.43332 2.14146 2.22798 2.43721 2.89224 2.92780 2.94613 2.99426 3.43275 3.69974 3.73999 4.02601 4.28237 4.34508 4.44804 4.52771 4.72640 4.83463 4.91486 5.04755 5.06745 5.15714 5.25820 5.35944 5.45538 5.50305 5.59304 5.63991 5.73062 5.76300 5.90384 5.97538 5.98636 6.06242 6.11550 6.19637 6.24375 6.38306 6.72411 6.79928 6.87708 7.00579 7.08736 7.39055 7.56162 7.74589 7.81487 7.99765 8.05017 8.35689 8.36565 8.60809 8.71089 8.92676 9.88261 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010622 B = 0.003023 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.412478 B = 9259.374608 C =11280.629256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.445 4.445 8 H 0.084 0.916 9 C 0.127 3.873 10 C -0.235 4.235 11 C -0.027 4.027 12 C -0.279 4.279 13 C 0.577 3.423 14 O -0.570 6.570 15 N -0.617 5.617 16 C 0.114 3.886 17 C -0.123 4.123 18 C -0.101 4.101 19 C 0.118 3.882 20 N -0.285 5.285 21 C -0.051 4.051 22 C -0.054 4.054 23 N -0.275 5.275 24 N -0.083 5.083 25 C -0.128 4.128 26 C 0.079 3.921 27 C -0.082 4.082 28 C -0.174 4.174 29 H 0.286 0.714 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.189 0.811 40 H 0.188 0.812 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.134 0.866 45 H 0.108 0.892 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.317 -8.827 -14.670 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.473 4.473 8 H 0.102 0.898 9 C 0.124 3.876 10 C -0.255 4.255 11 C -0.046 4.046 12 C -0.283 4.283 13 C 0.372 3.628 14 O -0.451 6.451 15 N -0.351 5.351 16 C -0.009 4.009 17 C -0.162 4.162 18 C -0.120 4.120 19 C -0.003 4.003 20 N -0.078 5.078 21 C -0.202 4.202 22 C -0.212 4.212 23 N -0.141 5.141 24 N -0.063 5.063 25 C -0.167 4.167 26 C -0.043 4.043 27 C -0.101 4.101 28 C -0.194 4.194 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.206 0.794 40 H 0.205 0.795 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.151 0.849 45 H 0.126 0.874 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.430 -9.156 -13.904 16.709 hybrid contribution 1.513 0.712 -0.291 1.697 sum 0.084 -8.444 -14.196 16.518 Atomic orbital electron populations 1.69740 1.07873 1.29960 1.32071 1.26083 0.94807 1.01839 0.91936 0.86183 0.81053 0.80293 0.78891 1.18100 1.19384 1.19670 1.19851 0.98082 0.91076 1.38250 0.89759 1.17777 0.90426 0.92148 0.87262 1.20708 1.04554 0.92700 1.07533 1.20274 0.93453 0.97039 0.93807 1.18820 1.04583 0.91172 1.13752 1.18720 0.76360 0.87908 0.79771 1.90638 1.61717 1.42175 1.50550 1.47935 1.57278 1.13676 1.16184 1.21388 0.95905 0.87988 0.95608 1.21891 1.02523 0.96904 0.94918 1.21530 1.01846 0.96970 0.91690 1.22320 1.03681 0.87993 0.86264 1.47519 1.05997 1.27793 1.26521 1.23713 0.98047 1.00684 0.97715 1.23623 0.90800 1.02560 1.04181 1.75132 1.17772 1.13002 1.08191 1.78294 1.07069 1.07959 1.12950 1.21991 0.99954 0.96939 0.97767 1.22689 1.02143 0.91161 0.88318 1.20849 0.98730 0.92531 0.97985 1.21020 0.99848 0.96774 1.01730 0.90268 0.88392 0.88586 0.92138 0.88885 0.90574 0.91027 0.89082 0.88236 0.87562 0.79421 0.79507 0.91132 0.91472 0.92079 0.84914 0.87402 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.46 10.95 55.56 0.61 -17.85 16 2 C 0.07 1.72 5.15 -17.31 -0.09 1.63 16 3 Si 0.91 17.11 29.59 -169.99 -5.03 12.08 16 4 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 7 C -0.44 -10.88 9.05 -37.75 -0.34 -11.23 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.13 3.16 5.57 -106.80 -0.59 2.57 16 10 C -0.24 -5.56 9.73 -39.27 -0.38 -5.94 16 11 C -0.03 -0.61 9.53 -39.61 -0.38 -0.98 16 12 C -0.28 -6.18 5.55 -104.73 -0.58 -6.76 16 13 C 0.58 11.96 7.44 -12.42 -0.09 11.86 16 14 O -0.57 -13.29 16.17 5.29 0.09 -13.21 16 15 N -0.62 -9.99 2.97 -173.95 -0.52 -10.50 16 16 C 0.11 1.47 6.42 -3.71 -0.02 1.45 16 17 C -0.12 -1.13 5.36 -26.62 -0.14 -1.27 16 18 C -0.10 -0.92 2.20 -90.58 -0.20 -1.12 16 19 C 0.12 0.83 5.85 -4.04 -0.02 0.80 16 20 N -0.28 -2.72 2.87 -61.26 -0.18 -2.90 16 21 C -0.05 -0.41 11.57 -17.05 -0.20 -0.61 16 22 C -0.05 -0.52 12.05 -17.74 -0.21 -0.74 16 23 N -0.28 -3.67 12.41 30.24 0.38 -3.29 16 24 N -0.08 -1.06 12.82 60.35 0.77 -0.29 16 25 C -0.13 -1.46 5.26 -26.62 -0.14 -1.60 16 26 C 0.08 1.14 4.88 -3.71 -0.02 1.12 16 27 C -0.08 -1.78 7.36 -39.61 -0.29 -2.07 16 28 C -0.17 -4.17 8.63 -39.27 -0.34 -4.50 16 29 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 30 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 31 H 0.10 2.10 7.95 -52.49 -0.42 1.68 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.33 7.02 -51.93 -0.36 0.97 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.95 8.00 -51.93 -0.42 0.54 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.11 0.52 8.07 -51.93 -0.42 0.10 16 39 H 0.19 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.19 1.20 8.06 -52.48 -0.42 0.78 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.80 7.72 -51.92 -0.40 0.40 16 43 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 44 H 0.13 2.19 3.55 -53.99 -0.19 2.00 16 45 H 0.11 2.06 5.29 -52.49 -0.28 1.78 16 46 H 0.12 2.94 6.18 -52.48 -0.32 2.61 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -30.94 373.67 -8.46 -39.40 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -6.16 Total: 8.32 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -4.05 Total: -17.39 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 1.06 Total: -34.84 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.94 -8.46 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270481725.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.400 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds