Wall clock time and date at job start Sat Apr 11 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86798 * 119.99645 * 2 1 4 4 H 1.48499 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47102 * 300.00124 * 3 2 1 6 6 H 1.48499 * 109.47159 * 59.99957 * 3 2 1 7 7 C 1.40220 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00072 * 196.88814 * 7 2 1 9 9 C 1.41113 * 120.00230 * 16.89112 * 7 2 1 10 10 C 1.40888 * 120.10187 * 205.46226 * 9 7 2 11 11 C 1.36321 * 119.88766 * 180.02562 * 10 9 7 12 12 C 1.40011 * 120.11010 * 359.97438 * 11 10 9 13 13 C 1.47637 * 119.89639 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99839 * 32.70667 * 13 12 11 15 15 N 1.34774 * 120.00073 * 212.70735 * 13 12 11 16 16 C 1.46931 * 120.63305 * 178.64295 * 15 13 12 17 17 C 1.53185 * 108.77619 * 233.58367 * 16 15 13 18 18 C 1.53040 * 109.31169 * 305.36442 * 17 16 15 19 19 C 1.53007 * 109.45907 * 181.38252 * 18 17 16 20 20 N 1.46495 * 109.47171 * 174.99571 * 19 18 17 21 21 C 1.35312 * 125.86776 * 125.00140 * 20 19 18 22 22 C 1.35353 * 106.17393 * 179.97438 * 21 20 19 23 23 N 1.33769 * 106.49757 * 0.02562 * 22 21 20 24 24 N 1.28630 * 108.88728 * 0.02562 * 23 22 21 25 25 C 1.53035 * 109.53889 * 61.36669 * 18 17 16 26 26 C 1.46930 * 120.63367 * 358.61311 * 15 13 12 27 27 C 1.40014 * 120.20462 * 0.28056 * 12 11 10 28 28 C 1.36313 * 120.10931 * 359.47490 * 27 12 11 29 29 H 0.96995 * 120.00492 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.05554 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.94261 * 180.02562 * 11 10 9 32 32 H 1.09001 * 109.58781 * 113.79354 * 16 15 13 33 33 H 1.09003 * 109.69831 * 353.44318 * 16 15 13 34 34 H 1.08994 * 109.50085 * 185.40644 * 17 16 15 35 35 H 1.09005 * 109.49906 * 65.31391 * 17 16 15 36 36 H 1.08998 * 109.45941 * 301.35238 * 18 17 16 37 37 H 1.09001 * 109.46714 * 54.99842 * 19 18 17 38 38 H 1.09003 * 109.47239 * 295.00075 * 19 18 17 39 39 H 1.07997 * 126.91049 * 359.97438 * 21 20 19 40 40 H 1.08006 * 126.74691 * 179.97438 * 22 21 20 41 41 H 1.08995 * 109.50007 * 58.58415 * 25 18 17 42 42 H 1.09010 * 109.49775 * 178.68487 * 25 18 17 43 43 H 1.08997 * 109.58832 * 246.21040 * 26 15 13 44 44 H 1.09006 * 109.57938 * 6.49109 * 26 15 13 45 45 H 1.08001 * 119.94332 * 179.72184 * 27 12 11 46 46 H 1.08007 * 120.05660 * 180.25596 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7004 1.3465 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0076 -1.2143 -0.0005 8 1 3.0527 -1.2347 0.2712 9 6 1.3477 -2.4099 -0.3561 10 6 1.8180 -3.6471 0.1268 11 6 1.1775 -4.7995 -0.2199 12 6 0.0538 -4.7549 -1.0540 13 6 -0.6359 -6.0058 -1.4270 14 8 -0.6742 -6.9355 -0.6443 15 7 -1.2230 -6.1173 -2.6350 16 6 -1.8875 -7.3661 -3.0321 17 6 -1.3128 -7.8247 -4.3759 18 6 -1.4439 -6.6912 -5.3958 19 6 -0.9022 -7.1576 -6.7486 20 7 -1.1360 -6.1172 -7.7532 21 6 -0.1936 -5.5497 -8.5410 22 6 -0.8418 -4.6470 -9.3137 23 7 -2.1319 -4.7053 -8.9649 24 7 -2.2732 -5.5853 -8.0374 25 6 -0.6441 -5.4773 -4.9175 26 6 -1.2113 -4.9920 -3.5798 27 6 -0.4139 -3.5282 -1.5407 28 6 0.2169 -2.3702 -1.1955 29 1 -0.4850 0.8400 0.0004 30 1 2.6844 -3.6825 0.7706 31 1 1.5369 -5.7483 0.1501 32 1 -2.9591 -7.1939 -3.1326 33 1 -1.7098 -8.1327 -2.2779 34 1 -1.8633 -8.6969 -4.7285 35 1 -0.2610 -8.0833 -4.2526 36 1 -2.4934 -6.4163 -5.5001 37 1 -1.4123 -8.0731 -7.0482 38 1 0.1678 -7.3484 -6.6654 39 1 0.8631 -5.7723 -8.5512 40 1 -0.4034 -4.0053 -10.0637 41 1 0.4013 -5.7580 -4.7890 42 1 -0.7188 -4.6786 -5.6555 43 1 -2.2278 -4.6262 -3.7249 44 1 -0.5872 -4.1902 -3.1852 45 1 -1.2784 -3.4991 -2.1875 46 1 -0.1472 -1.4240 -1.5681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270481725.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:47 Heat of formation + Delta-G solvation = 78.692616 kcal Electronic energy + Delta-G solvation = -29054.663160 eV Core-core repulsion = 25138.881845 eV Total energy + Delta-G solvation = -3915.781314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.12370 -41.43411 -39.32586 -38.57813 -36.16016 -35.69489 -33.78658 -32.61795 -31.87893 -31.52726 -31.28106 -29.10287 -27.62806 -25.39835 -24.61528 -23.67980 -23.34625 -22.75587 -22.29138 -21.40614 -20.19479 -19.36837 -18.40540 -18.06884 -17.55819 -17.23435 -16.93067 -16.28187 -16.01616 -15.80628 -15.55987 -15.39904 -15.17809 -15.07661 -14.69795 -14.54270 -14.29079 -14.14452 -14.00123 -13.63413 -13.39512 -13.29224 -12.96393 -12.83456 -12.73897 -12.58626 -12.40878 -12.24493 -12.14494 -11.83361 -11.77127 -11.63536 -11.61451 -11.27311 -11.14987 -10.93061 -10.57392 -10.25470 -9.70827 -9.49251 -9.35323 -8.78112 -6.48196 0.47911 0.75644 1.09243 1.38421 1.41628 1.55013 1.55850 1.70081 2.00693 2.14392 2.16887 2.69929 3.38029 3.57671 3.63167 3.64260 3.74538 3.98067 4.06134 4.11320 4.23371 4.26481 4.30015 4.38493 4.40401 4.40918 4.42478 4.52977 4.68659 4.81239 4.85753 4.88483 4.90682 4.94543 4.96269 5.02844 5.03659 5.14896 5.27823 5.30640 5.37215 5.56265 5.65014 5.76179 5.80220 5.94831 5.98206 6.21584 6.47412 6.53803 6.77957 6.87829 7.33226 7.61014 8.17412 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010622 B = 0.003023 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.412478 B = 9259.374608 C =11280.629256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.038 3.962 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.261 1.261 6 H -0.266 1.266 7 C -0.476 4.476 8 H 0.085 0.915 9 C 0.102 3.898 10 C -0.249 4.249 11 C -0.035 4.035 12 C -0.285 4.285 13 C 0.573 3.427 14 O -0.602 6.602 15 N -0.607 5.607 16 C 0.105 3.895 17 C -0.111 4.111 18 C -0.092 4.092 19 C 0.117 3.883 20 N -0.283 5.283 21 C -0.037 4.037 22 C -0.070 4.070 23 N -0.319 5.319 24 N -0.122 5.122 25 C -0.118 4.118 26 C 0.076 3.924 27 C -0.070 4.070 28 C -0.194 4.194 29 H 0.295 0.705 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.230 0.770 40 H 0.211 0.789 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.131 0.869 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.057 -9.579 -16.602 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.185 1.185 6 H -0.191 1.191 7 C -0.503 4.503 8 H 0.103 0.897 9 C 0.099 3.901 10 C -0.268 4.268 11 C -0.054 4.054 12 C -0.290 4.290 13 C 0.368 3.632 14 O -0.486 6.486 15 N -0.338 5.338 16 C -0.017 4.017 17 C -0.150 4.150 18 C -0.112 4.112 19 C -0.003 4.003 20 N -0.076 5.076 21 C -0.188 4.188 22 C -0.228 4.228 23 N -0.184 5.184 24 N -0.101 5.101 25 C -0.156 4.156 26 C -0.046 4.046 27 C -0.088 4.088 28 C -0.213 4.213 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.246 0.754 40 H 0.228 0.772 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.128 0.872 45 H 0.149 0.851 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.728 -9.929 -15.870 18.734 hybrid contribution 1.240 0.857 0.274 1.532 sum 0.512 -9.072 -15.596 18.050 Atomic orbital electron populations 1.69773 1.09281 1.31424 1.32301 1.26912 0.95493 1.04834 0.90832 0.85083 0.79542 0.75598 0.79147 1.17826 1.18532 1.19071 1.20104 0.98406 0.92064 1.39765 0.89669 1.18105 0.91197 0.92903 0.87927 1.20853 1.05146 0.92761 1.08064 1.20436 0.93858 0.97066 0.94064 1.19114 1.04352 0.92283 1.13228 1.18511 0.76854 0.86897 0.80975 1.90616 1.63299 1.42786 1.51907 1.47930 1.55737 1.15333 1.14834 1.21690 0.96638 0.85942 0.97407 1.21816 1.02975 0.97812 0.92353 1.21387 1.00849 0.95820 0.93113 1.22529 1.05737 0.87866 0.84164 1.47743 1.05591 1.27688 1.26619 1.24370 0.99392 0.99044 0.96035 1.24189 0.89959 1.03502 1.05116 1.75067 1.20006 1.14097 1.09241 1.78227 1.08709 1.09173 1.13981 1.21867 1.00254 0.97967 0.95535 1.22669 1.02259 0.90205 0.89455 1.21051 0.98859 0.91673 0.97243 1.21007 1.00563 0.97090 1.02671 0.89362 0.87697 0.87969 0.90906 0.90365 0.87155 0.90683 0.90242 0.86030 0.84565 0.75385 0.77218 0.90831 0.91848 0.91358 0.87247 0.85132 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.01 10.95 21.87 0.24 -38.77 16 2 C 0.04 1.75 5.15 85.35 0.44 2.19 16 3 Si 0.99 34.91 29.59 68.60 2.03 36.94 16 4 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 5 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 6 H -0.27 -9.12 7.11 99.48 0.71 -8.41 16 7 C -0.48 -23.89 9.05 23.46 0.21 -23.68 16 8 H 0.09 4.10 7.90 -2.91 -0.02 4.07 16 9 C 0.10 5.23 5.57 -21.28 -0.12 5.11 16 10 C -0.25 -12.11 9.73 22.47 0.22 -11.90 16 11 C -0.04 -1.64 9.53 22.25 0.21 -1.43 16 12 C -0.29 -12.84 5.55 -19.93 -0.11 -12.95 16 13 C 0.57 23.77 7.44 86.73 0.65 24.42 16 14 O -0.60 -28.29 16.17 -4.00 -0.06 -28.35 16 15 N -0.61 -19.04 2.97 -822.52 -2.44 -21.49 16 16 C 0.11 2.52 6.42 86.36 0.55 3.07 16 17 C -0.11 -1.64 5.36 30.67 0.16 -1.47 16 18 C -0.09 -1.40 2.20 -10.77 -0.02 -1.42 16 19 C 0.12 1.15 5.85 86.38 0.50 1.65 16 20 N -0.28 -4.59 2.87 -347.73 -1.00 -5.59 16 21 C -0.04 -0.47 11.57 83.49 0.97 0.49 16 22 C -0.07 -1.22 12.05 83.73 1.01 -0.21 16 23 N -0.32 -8.29 12.41 -58.25 -0.72 -9.01 16 24 N -0.12 -2.97 12.82 37.02 0.47 -2.50 16 25 C -0.12 -2.43 5.26 30.67 0.16 -2.27 16 26 C 0.08 2.10 4.88 86.36 0.42 2.53 16 27 C -0.07 -3.08 7.36 22.25 0.16 -2.91 16 28 C -0.19 -9.55 8.63 22.47 0.19 -9.36 16 29 H 0.30 12.78 8.29 -92.71 -0.77 12.01 16 30 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 31 H 0.10 4.56 7.95 -2.91 -0.02 4.54 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 33 H 0.08 2.15 7.02 -2.39 -0.02 2.14 16 34 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.08 1.46 8.00 -2.39 -0.02 1.44 16 37 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.14 0.58 8.07 -2.39 -0.02 0.56 16 39 H 0.23 0.81 8.06 -2.91 -0.02 0.79 16 40 H 0.21 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 1.39 7.72 -2.38 -0.02 1.37 16 43 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 44 H 0.11 3.59 3.55 -4.32 -0.02 3.57 16 45 H 0.13 5.02 5.29 -2.91 -0.02 5.01 16 46 H 0.11 5.60 6.18 -2.91 -0.02 5.59 16 Total: -1.00 -70.96 373.67 5.13 -65.84 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 1.00 Total: 31.08 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 5.61 Total: -28.15 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -3.45 Total: -77.36 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.06 Total: -28.35 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Total: -70.96 5.13 -65.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270481725.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.530 kcal (2) G-P(sol) polarization free energy of solvation -70.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds