Wall clock time and date at job start Sat Apr 11 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00070 * 2 1 4 4 H 1.48496 * 109.47127 * 240.00066 * 3 2 1 5 5 H 1.48495 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46796 * 120.00089 * 3 2 1 7 7 C 1.38810 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99812 * 163.08052 * 7 2 1 9 9 N 1.36934 * 120.00418 * 343.08033 * 7 2 1 10 10 C 1.46928 * 120.62585 * 331.84268 * 9 7 2 11 11 C 1.53193 * 108.77692 * 233.58660 * 10 9 7 12 12 C 1.53048 * 109.31219 * 305.36992 * 11 10 9 13 13 N 1.46500 * 109.45689 * 181.38390 * 12 11 10 14 14 C 1.34782 * 119.99819 * 154.97044 * 13 12 11 15 15 O 1.21603 * 119.99829 * 0.02562 * 14 13 12 16 16 C 1.47412 * 119.99810 * 179.97438 * 14 13 12 17 17 C 1.41324 * 126.41247 * 359.97438 * 16 14 13 18 18 N 1.30479 * 108.07012 * 179.73866 * 17 16 14 19 19 N 1.39939 * 108.90890 * 0.44051 * 18 17 16 20 20 C 1.40157 * 125.76748 * 179.80729 * 19 18 17 21 21 C 1.38852 * 120.06438 * 179.69174 * 20 19 18 22 22 C 1.38119 * 119.92917 * 180.02562 * 21 20 19 23 23 C 1.38280 * 120.06784 * 359.97438 * 22 21 20 24 24 C 1.38288 * 120.13546 * 0.02669 * 23 22 21 25 25 C 1.38108 * 120.06908 * 359.97438 * 24 23 22 26 26 C 1.34539 * 108.46046 * 359.55055 * 19 18 17 27 27 C 1.53032 * 109.52693 * 61.36910 * 12 11 10 28 28 C 1.46923 * 120.63604 * 151.82572 * 9 7 2 29 29 H 0.97003 * 119.99995 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.58658 * 113.80498 * 10 9 7 31 31 H 1.08993 * 109.70843 * 353.44565 * 10 9 7 32 32 H 1.09001 * 109.50153 * 185.41485 * 11 10 9 33 33 H 1.09003 * 109.52112 * 65.33147 * 11 10 9 34 34 H 1.08994 * 109.45905 * 301.35241 * 12 11 10 35 35 H 0.97001 * 120.00387 * 334.97091 * 13 12 11 36 36 H 1.08003 * 125.96479 * 0.02562 * 17 16 14 37 37 H 1.07996 * 120.03230 * 0.02562 * 21 20 19 38 38 H 1.07995 * 119.96339 * 180.25978 * 22 21 20 39 39 H 1.07998 * 119.93283 * 180.02562 * 23 22 21 40 40 H 1.08001 * 119.96447 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.04015 * 179.97438 * 25 24 23 42 42 H 1.07994 * 126.30819 * 180.29587 * 26 19 18 43 43 H 1.09001 * 109.50032 * 58.57820 * 27 12 11 44 44 H 1.09001 * 109.49993 * 178.67752 * 27 12 11 45 45 H 1.09000 * 109.58470 * 246.19943 * 28 9 7 46 46 H 1.09004 * 109.58385 * 6.47897 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3700 -2.3626 0.3441 10 6 0.2260 -2.3410 1.2657 11 6 0.4972 -3.3211 2.4114 12 6 0.8118 -4.7023 1.8321 13 7 1.0393 -5.6500 2.9259 14 6 0.8354 -6.9677 2.7293 15 8 0.4630 -7.3699 1.6438 16 6 1.0648 -7.9213 3.8297 17 6 1.4968 -7.6049 5.1376 18 7 1.5754 -8.7156 5.8177 19 7 1.2127 -9.7823 4.9876 20 6 1.1774 -11.1335 5.3582 21 6 0.7917 -12.0977 4.4366 22 6 0.7574 -13.4285 4.8049 23 6 1.1071 -13.8008 6.0899 24 6 1.4917 -12.8428 7.0100 25 6 1.5280 -11.5106 6.6477 26 6 0.8983 -9.2908 3.7753 27 6 2.0674 -4.6179 0.9612 28 6 1.8138 -3.6527 -0.2010 29 1 -0.4850 0.8401 0.0004 30 1 -0.6771 -2.6411 0.7343 31 1 0.0966 -1.3361 1.6675 32 1 -0.3834 -3.3865 3.0505 33 1 1.3468 -2.9703 2.9974 34 1 -0.0282 -5.0419 1.2263 35 1 1.3367 -5.3292 3.7917 36 1 1.7183 -6.6158 5.5105 37 1 0.5189 -11.8075 3.4328 38 1 0.4615 -14.1793 4.0873 39 1 1.0799 -14.8420 6.3755 40 1 1.7639 -13.1367 8.0130 41 1 1.8279 -10.7627 7.3668 42 1 0.5746 -9.8622 2.9179 43 1 2.9021 -4.2545 1.5606 44 1 2.3045 -5.6064 0.5679 45 1 1.0402 -4.0598 -0.8521 46 1 2.7332 -3.5124 -0.7695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000320446509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:01 Heat of formation + Delta-G solvation = 92.756810 kcal Electronic energy + Delta-G solvation = -27965.876914 eV Core-core repulsion = 24050.705469 eV Total energy + Delta-G solvation = -3915.171445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.01789 -39.68187 -39.09797 -37.20333 -34.43155 -34.01066 -32.12702 -31.75107 -30.63827 -30.16292 -29.71985 -28.97871 -25.33656 -24.10655 -23.69848 -22.54478 -22.15040 -21.48702 -20.97402 -19.97394 -19.38720 -18.68211 -17.17204 -16.70005 -16.10502 -15.90478 -15.83922 -15.63503 -14.98599 -14.77133 -14.44542 -14.40649 -14.06239 -13.93355 -13.61158 -13.50698 -13.21118 -13.13282 -12.92547 -12.55984 -12.32471 -12.18898 -11.83260 -11.44431 -11.30841 -11.09178 -10.84417 -10.80530 -10.70045 -10.47091 -10.26010 -10.02001 -9.87933 -9.68858 -9.57426 -9.50446 -9.46712 -8.72711 -8.50206 -8.41387 -6.66340 -5.77844 -3.19983 0.29222 0.78065 1.57870 1.83855 1.93177 3.24823 3.38391 3.42186 3.45311 3.46478 3.49651 4.00733 4.24876 4.40372 4.41546 4.51056 4.59374 4.78089 4.81635 4.90991 5.05464 5.16877 5.32961 5.37187 5.43577 5.50009 5.54833 5.62951 5.71255 5.79369 5.91188 5.93470 6.07936 6.11377 6.18255 6.30472 6.37148 6.56148 6.60039 6.62719 6.65337 6.82766 6.95433 7.02484 7.13187 7.33926 7.62274 7.77313 7.82101 8.44558 8.46678 9.22594 9.85864 10.43065 11.31041 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.037766 B = 0.001799 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.232056 B =15558.336577 C =15868.183105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.153 3.847 13 N -0.718 5.718 14 C 0.590 3.410 15 O -0.548 6.548 16 C -0.274 4.274 17 C 0.092 3.908 18 N -0.292 5.292 19 N -0.314 5.314 20 C 0.155 3.845 21 C -0.138 4.138 22 C -0.092 4.092 23 C -0.128 4.128 24 C -0.097 4.097 25 C -0.116 4.116 26 C 0.123 3.877 27 C -0.139 4.139 28 C 0.147 3.853 29 H 0.254 0.746 30 H 0.021 0.979 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.394 0.606 36 H 0.197 0.803 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.191 0.809 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.020 0.980 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.631 -25.770 14.713 29.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.050 3.950 13 N -0.367 5.367 14 C 0.376 3.624 15 O -0.427 6.427 16 C -0.288 4.288 17 C -0.097 4.097 18 N -0.109 5.109 19 N -0.087 5.087 20 C 0.063 3.937 21 C -0.159 4.159 22 C -0.111 4.111 23 C -0.146 4.146 24 C -0.116 4.116 25 C -0.135 4.135 26 C -0.023 4.023 27 C -0.179 4.179 28 C 0.020 3.980 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.228 0.772 36 H 0.214 0.786 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.208 0.792 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.526 -26.453 15.049 30.472 hybrid contribution 0.390 1.444 -0.325 1.531 sum 1.916 -25.009 14.724 29.084 Atomic orbital electron populations 1.70018 1.05233 1.25618 1.53915 1.25051 0.95289 0.98402 1.00914 0.86364 0.78896 0.83364 0.78114 1.20895 1.21661 1.21080 1.19147 0.92554 0.84775 1.41705 0.91715 1.44077 1.35810 1.01657 1.49970 1.20737 0.88909 0.97888 0.87688 1.22544 1.00568 0.94724 1.00840 1.21048 0.98548 0.88089 0.87336 1.46110 1.68637 1.06108 1.15818 1.17148 0.77059 0.81923 0.86223 1.90779 1.47606 1.78537 1.25786 1.20484 1.18268 0.93438 0.96584 1.24276 0.95945 0.97957 0.91523 1.77228 1.23129 0.93324 1.17224 1.45660 1.49455 1.05075 1.08510 1.17616 1.01873 0.78976 0.95238 1.20934 1.02915 0.92642 0.99411 1.21014 0.98507 0.94878 0.96709 1.21291 0.99717 1.00030 0.93594 1.21109 0.98484 0.91904 1.00067 1.20947 1.00857 0.97249 0.94489 1.23015 0.95724 0.94268 0.89338 1.22376 0.97155 0.99542 0.98856 1.20876 0.97889 0.86531 0.92659 0.93566 0.96102 0.89051 0.92694 0.92147 0.89928 0.77219 0.78592 0.84869 0.84760 0.85278 0.84932 0.84280 0.79168 0.92317 0.92694 0.96181 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.76 2.99 -172.32 -0.52 -15.27 16 10 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 11 C -0.15 -2.66 5.55 -26.61 -0.15 -2.80 16 12 C 0.15 2.65 2.42 -67.89 -0.16 2.48 16 13 N -0.72 -10.07 5.07 -54.85 -0.28 -10.35 16 14 C 0.59 8.83 7.78 -12.52 -0.10 8.73 16 15 O -0.55 -10.16 16.56 5.27 0.09 -10.07 16 16 C -0.27 -3.35 6.13 -105.05 -0.64 -3.99 16 17 C 0.09 0.96 11.50 -16.95 -0.20 0.76 16 18 N -0.29 -3.36 11.77 30.87 0.36 -3.00 16 19 N -0.31 -3.44 3.77 -10.20 -0.04 -3.48 16 20 C 0.15 1.44 6.68 -83.60 -0.56 0.88 16 21 C -0.14 -1.01 9.45 -39.40 -0.37 -1.38 16 22 C -0.09 -0.52 10.04 -39.61 -0.40 -0.92 16 23 C -0.13 -0.67 10.04 -39.55 -0.40 -1.07 16 24 C -0.10 -0.58 10.04 -39.61 -0.40 -0.98 16 25 C -0.12 -0.95 9.65 -39.40 -0.38 -1.33 16 26 C 0.12 1.37 10.61 -16.43 -0.17 1.19 16 27 C -0.14 -2.54 5.65 -26.62 -0.15 -2.69 16 28 C 0.15 3.18 6.52 -3.71 -0.02 3.15 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 2.37 6.07 -51.93 -0.31 2.05 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 35 H 0.39 4.35 7.55 -40.82 -0.31 4.04 16 36 H 0.20 1.38 7.50 -52.48 -0.39 0.98 16 37 H 0.13 0.78 6.71 -52.49 -0.35 0.43 16 38 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 39 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 40 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 41 H 0.14 1.17 7.68 -52.49 -0.40 0.76 16 42 H 0.19 1.70 7.01 -52.49 -0.37 1.33 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -33.58 381.37 -9.69 -43.27 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.30 Total: 3.01 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -4.35 Total: -0.97 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.15 Total: -57.49 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.58 -9.69 -43.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320446509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.029 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds