Wall clock time and date at job start Sat Apr 11 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00070 * 2 1 4 4 H 1.48496 * 109.47127 * 240.00066 * 3 2 1 5 5 H 1.48495 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46796 * 120.00089 * 3 2 1 7 7 C 1.38810 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99812 * 163.08052 * 7 2 1 9 9 N 1.36934 * 120.00418 * 343.08033 * 7 2 1 10 10 C 1.46928 * 120.62585 * 331.84268 * 9 7 2 11 11 C 1.53193 * 108.77692 * 233.58660 * 10 9 7 12 12 C 1.53048 * 109.31219 * 305.36992 * 11 10 9 13 13 N 1.46500 * 109.45689 * 181.38390 * 12 11 10 14 14 C 1.34782 * 119.99819 * 154.97044 * 13 12 11 15 15 O 1.21603 * 119.99829 * 0.02562 * 14 13 12 16 16 C 1.47412 * 119.99810 * 179.97438 * 14 13 12 17 17 C 1.41324 * 126.41247 * 359.97438 * 16 14 13 18 18 N 1.30479 * 108.07012 * 179.73866 * 17 16 14 19 19 N 1.39939 * 108.90890 * 0.44051 * 18 17 16 20 20 C 1.40157 * 125.76748 * 179.80729 * 19 18 17 21 21 C 1.38852 * 120.06438 * 179.69174 * 20 19 18 22 22 C 1.38119 * 119.92917 * 180.02562 * 21 20 19 23 23 C 1.38280 * 120.06784 * 359.97438 * 22 21 20 24 24 C 1.38288 * 120.13546 * 0.02669 * 23 22 21 25 25 C 1.38108 * 120.06908 * 359.97438 * 24 23 22 26 26 C 1.34539 * 108.46046 * 359.55055 * 19 18 17 27 27 C 1.53032 * 109.52693 * 61.36910 * 12 11 10 28 28 C 1.46923 * 120.63604 * 151.82572 * 9 7 2 29 29 H 0.97003 * 119.99995 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.58658 * 113.80498 * 10 9 7 31 31 H 1.08993 * 109.70843 * 353.44565 * 10 9 7 32 32 H 1.09001 * 109.50153 * 185.41485 * 11 10 9 33 33 H 1.09003 * 109.52112 * 65.33147 * 11 10 9 34 34 H 1.08994 * 109.45905 * 301.35241 * 12 11 10 35 35 H 0.97001 * 120.00387 * 334.97091 * 13 12 11 36 36 H 1.08003 * 125.96479 * 0.02562 * 17 16 14 37 37 H 1.07996 * 120.03230 * 0.02562 * 21 20 19 38 38 H 1.07995 * 119.96339 * 180.25978 * 22 21 20 39 39 H 1.07998 * 119.93283 * 180.02562 * 23 22 21 40 40 H 1.08001 * 119.96447 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.04015 * 179.97438 * 25 24 23 42 42 H 1.07994 * 126.30819 * 180.29587 * 26 19 18 43 43 H 1.09001 * 109.50032 * 58.57820 * 27 12 11 44 44 H 1.09001 * 109.49993 * 178.67752 * 27 12 11 45 45 H 1.09000 * 109.58470 * 246.19943 * 28 9 7 46 46 H 1.09004 * 109.58385 * 6.47897 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3700 -2.3626 0.3441 10 6 0.2260 -2.3410 1.2657 11 6 0.4972 -3.3211 2.4114 12 6 0.8118 -4.7023 1.8321 13 7 1.0393 -5.6500 2.9259 14 6 0.8354 -6.9677 2.7293 15 8 0.4630 -7.3699 1.6438 16 6 1.0648 -7.9213 3.8297 17 6 1.4968 -7.6049 5.1376 18 7 1.5754 -8.7156 5.8177 19 7 1.2127 -9.7823 4.9876 20 6 1.1774 -11.1335 5.3582 21 6 0.7917 -12.0977 4.4366 22 6 0.7574 -13.4285 4.8049 23 6 1.1071 -13.8008 6.0899 24 6 1.4917 -12.8428 7.0100 25 6 1.5280 -11.5106 6.6477 26 6 0.8983 -9.2908 3.7753 27 6 2.0674 -4.6179 0.9612 28 6 1.8138 -3.6527 -0.2010 29 1 -0.4850 0.8401 0.0004 30 1 -0.6771 -2.6411 0.7343 31 1 0.0966 -1.3361 1.6675 32 1 -0.3834 -3.3865 3.0505 33 1 1.3468 -2.9703 2.9974 34 1 -0.0282 -5.0419 1.2263 35 1 1.3367 -5.3292 3.7917 36 1 1.7183 -6.6158 5.5105 37 1 0.5189 -11.8075 3.4328 38 1 0.4615 -14.1793 4.0873 39 1 1.0799 -14.8420 6.3755 40 1 1.7639 -13.1367 8.0130 41 1 1.8279 -10.7627 7.3668 42 1 0.5746 -9.8622 2.9179 43 1 2.9021 -4.2545 1.5606 44 1 2.3045 -5.6064 0.5679 45 1 1.0402 -4.0598 -0.8521 46 1 2.7332 -3.5124 -0.7695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000320446509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:00 Heat of formation + Delta-G solvation = 72.725315 kcal Electronic energy + Delta-G solvation = -27966.745545 eV Core-core repulsion = 24050.705469 eV Total energy + Delta-G solvation = -3916.040076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.81888 -40.73982 -39.87178 -38.79352 -35.97345 -34.78115 -33.84334 -32.35133 -31.86208 -31.47506 -31.03504 -30.00031 -27.03520 -25.19216 -24.32572 -23.92335 -23.59094 -22.65569 -21.73180 -21.17097 -20.74395 -19.65231 -18.74372 -17.71106 -17.20459 -16.86079 -16.75450 -16.65059 -16.34997 -15.78071 -15.69077 -15.41976 -15.30883 -15.04086 -14.87510 -14.62275 -14.55535 -14.24657 -14.11910 -13.81248 -13.74749 -13.18767 -12.97989 -12.66568 -12.56768 -12.53503 -12.46606 -12.20294 -12.01844 -11.95348 -11.84557 -11.53753 -11.51311 -11.32142 -10.91982 -10.53042 -10.35473 -10.05682 -9.95497 -9.20161 -8.68424 -7.85805 -5.31398 -0.35385 0.30061 0.77020 1.10838 1.14829 1.50164 1.51865 1.59017 2.25455 2.40005 2.53740 2.75347 3.27313 3.31047 3.56304 3.68551 3.83068 3.87222 3.90917 4.00277 4.09373 4.12127 4.21996 4.36989 4.39594 4.47645 4.50144 4.56599 4.63434 4.68138 4.84734 4.89741 4.99217 5.06738 5.08762 5.11655 5.18768 5.32454 5.33157 5.37925 5.49221 5.50083 5.58667 5.66182 5.66672 5.74158 6.01753 6.33720 6.40903 6.66356 7.16572 7.30828 7.86303 8.39260 9.21055 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.037766 B = 0.001799 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.232056 B =15558.336577 C =15868.183105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.178 3.822 11 C -0.129 4.129 12 C 0.165 3.835 13 N -0.705 5.705 14 C 0.594 3.406 15 O -0.589 6.589 16 C -0.294 4.294 17 C 0.099 3.901 18 N -0.313 5.313 19 N -0.312 5.312 20 C 0.120 3.880 21 C -0.145 4.145 22 C -0.094 4.094 23 C -0.122 4.122 24 C -0.099 4.099 25 C -0.130 4.130 26 C 0.126 3.874 27 C -0.124 4.124 28 C 0.144 3.856 29 H 0.251 0.749 30 H -0.006 1.006 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.412 0.588 36 H 0.228 0.772 37 H 0.142 0.858 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.155 0.845 41 H 0.130 0.870 42 H 0.206 0.794 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.007 0.993 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.707 -27.762 16.503 32.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.168 4.168 12 C 0.060 3.940 13 N -0.355 5.355 14 C 0.382 3.618 15 O -0.471 6.471 16 C -0.308 4.308 17 C -0.089 4.089 18 N -0.130 5.130 19 N -0.084 5.084 20 C 0.029 3.971 21 C -0.166 4.166 22 C -0.112 4.112 23 C -0.140 4.140 24 C -0.118 4.118 25 C -0.150 4.150 26 C -0.023 4.023 27 C -0.164 4.164 28 C 0.018 3.982 29 H 0.060 0.940 30 H 0.012 0.988 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.249 0.751 36 H 0.244 0.756 37 H 0.160 0.840 38 H 0.178 0.822 39 H 0.176 0.824 40 H 0.173 0.827 41 H 0.148 0.852 42 H 0.222 0.778 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.025 0.975 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.631 -28.483 16.897 33.222 hybrid contribution 0.033 1.868 -0.888 2.069 sum 2.664 -26.614 16.008 31.172 Atomic orbital electron populations 1.70181 1.06659 1.25981 1.55286 1.25811 0.96038 1.01495 1.01134 0.85325 0.77525 0.79129 0.78345 1.20352 1.22101 1.20169 1.19482 0.92861 0.85862 1.41193 0.91532 1.44332 1.35938 1.02170 1.50750 1.20568 0.87711 0.97762 0.88784 1.22265 1.02075 0.93576 0.98922 1.20646 0.97217 0.88237 0.87880 1.45780 1.68486 1.05467 1.15753 1.17430 0.75947 0.82139 0.86237 1.90758 1.49547 1.79164 1.27620 1.20236 1.20677 0.93345 0.96572 1.24728 0.94690 0.98966 0.90492 1.77205 1.24023 0.93779 1.18012 1.45812 1.48675 1.05695 1.08223 1.17989 1.04203 0.78557 0.96369 1.21188 1.02658 0.93132 0.99584 1.21399 0.97626 0.94634 0.97550 1.21703 0.97840 1.01311 0.93111 1.21421 0.97876 0.91065 1.01395 1.21049 1.01550 0.98236 0.94126 1.23295 0.94796 0.94291 0.89873 1.22174 0.97821 0.98636 0.97769 1.20967 0.97349 0.85970 0.93892 0.94041 0.98757 0.91848 0.90420 0.90958 0.92281 0.75071 0.75613 0.84021 0.82201 0.82390 0.82728 0.85206 0.77760 0.91438 0.92198 0.97469 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.18 11.19 21.65 0.24 -54.94 16 2 C -0.05 -2.74 4.92 84.86 0.42 -2.33 16 3 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.26 -14.50 9.58 84.03 0.81 -13.70 16 8 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 9 N -0.61 -30.75 2.99 -699.11 -2.09 -32.84 16 10 C 0.18 8.49 5.30 86.36 0.46 8.95 16 11 C -0.13 -4.53 5.55 30.67 0.17 -4.36 16 12 C 0.16 5.58 2.42 45.02 0.11 5.69 16 13 N -0.70 -18.64 5.07 -445.69 -2.26 -20.90 16 14 C 0.59 17.27 7.78 86.66 0.67 17.94 16 15 O -0.59 -21.84 16.56 -4.04 -0.07 -21.90 16 16 C -0.29 -6.89 6.13 -20.14 -0.12 -7.01 16 17 C 0.10 1.92 11.50 85.65 0.99 2.90 16 18 N -0.31 -6.94 11.77 -56.23 -0.66 -7.60 16 19 N -0.31 -6.64 3.77 -186.20 -0.70 -7.34 16 20 C 0.12 2.14 6.68 38.10 0.25 2.40 16 21 C -0.15 -1.92 9.45 22.39 0.21 -1.71 16 22 C -0.09 -0.81 10.04 22.25 0.22 -0.59 16 23 C -0.12 -0.91 10.04 22.29 0.22 -0.69 16 24 C -0.10 -0.99 10.04 22.25 0.22 -0.77 16 25 C -0.13 -2.04 9.65 22.39 0.22 -1.82 16 26 C 0.13 2.71 10.61 84.24 0.89 3.60 16 27 C -0.12 -4.44 5.65 30.67 0.17 -4.26 16 28 C 0.14 6.29 6.52 86.36 0.56 6.85 16 29 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 30 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 35 H 0.41 8.00 7.55 -92.71 -0.70 7.30 16 36 H 0.23 2.57 7.50 -2.91 -0.02 2.55 16 37 H 0.14 1.50 6.71 -2.91 -0.02 1.48 16 38 H 0.16 0.52 8.06 -2.91 -0.02 0.49 16 39 H 0.16 0.27 8.06 -2.91 -0.02 0.24 16 40 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 41 H 0.13 2.18 7.68 -2.91 -0.02 2.16 16 42 H 0.21 3.55 7.01 -2.91 -0.02 3.53 16 43 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.01 0.33 8.14 -2.39 -0.02 0.32 16 46 H 0.06 2.43 7.93 -2.38 -0.02 2.41 16 Total: -1.00 -74.46 381.37 3.27 -71.19 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.30 Total: 16.67 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.48 Total: 11.09 kcal Atomic # 7 Polarization: -118.15 SS G_CDS: -5.47 Total: -123.62 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.07 Total: -21.90 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -74.46 3.27 -71.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320446509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.914 kcal (2) G-P(sol) polarization free energy of solvation -74.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds