Wall clock time and date at job start Sat Apr 11 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86791 * 120.00092 * 2 1 4 4 H 1.48499 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47161 * 299.99792 * 3 2 1 6 6 H 1.48506 * 109.47259 * 60.00030 * 3 2 1 7 7 C 1.38813 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99825 * 163.48847 * 7 2 1 9 9 N 1.36934 * 120.00603 * 343.50055 * 7 2 1 10 10 C 1.46977 * 120.58673 * 330.33351 * 9 7 2 11 11 C 1.53367 * 108.63238 * 235.24849 * 10 9 7 12 12 N 1.46960 * 108.63822 * 310.57775 * 11 10 9 13 13 C 1.34778 * 120.59442 * 235.20000 * 12 11 10 14 14 O 1.21549 * 120.00196 * 5.51545 * 13 12 11 15 15 C 1.47848 * 119.99640 * 185.50413 * 13 12 11 16 16 C 1.39606 * 120.14400 * 54.43136 * 15 13 12 17 17 C 1.37938 * 119.84950 * 180.29318 * 16 15 13 18 18 C 1.38379 * 120.14722 * 359.67763 * 17 16 15 19 19 C 1.38338 * 120.29076 * 0.02562 * 18 17 16 20 20 C 1.37982 * 120.15013 * 359.97438 * 19 18 17 21 21 C 1.50698 * 120.07657 * 180.02562 * 20 19 18 22 22 N 1.46492 * 109.47265 * 265.92667 * 21 20 19 23 23 C 1.34949 * 126.03869 * 124.71842 * 22 21 20 24 24 C 1.35320 * 107.74167 * 179.83928 * 23 22 21 25 25 C 1.39862 * 107.92286 * 0.42033 * 24 23 22 26 26 N 1.30837 * 108.20420 * 359.73845 * 25 24 23 27 27 C 1.46964 * 118.80901 * 55.48323 * 12 11 10 28 28 C 1.46960 * 120.60152 * 150.36357 * 9 7 2 29 29 H 0.97002 * 120.00109 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.60093 * 115.50625 * 10 9 7 31 31 H 1.08994 * 109.60913 * 354.99540 * 10 9 7 32 32 H 1.09002 * 109.60499 * 190.83300 * 11 10 9 33 33 H 1.09002 * 109.60629 * 70.32816 * 11 10 9 34 34 H 1.07994 * 120.07225 * 359.97438 * 16 15 13 35 35 H 1.07996 * 119.92208 * 179.69528 * 17 16 15 36 36 H 1.08001 * 119.85645 * 180.02562 * 18 17 16 37 37 H 1.08008 * 119.92550 * 179.97438 * 19 18 17 38 38 H 1.09010 * 109.47149 * 25.92712 * 21 20 19 39 39 H 1.09002 * 109.46630 * 145.92278 * 21 20 19 40 40 H 1.07997 * 126.12603 * 359.97438 * 23 22 21 41 41 H 1.08008 * 126.03686 * 180.15895 * 24 23 22 42 42 H 1.07998 * 125.89858 * 179.75884 * 25 24 23 43 43 H 1.08995 * 109.61339 * 64.26577 * 27 12 11 44 44 H 1.09007 * 109.60670 * 184.77455 * 27 12 11 45 45 H 1.08997 * 109.60806 * 244.49420 * 28 9 7 46 46 H 1.09005 * 109.60436 * 4.99910 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0568 -1.2216 -0.2653 9 7 1.3679 -2.3635 0.3378 10 6 0.2385 -2.3476 1.2784 11 6 0.5434 -3.3176 2.4266 12 7 0.9712 -4.6022 1.8552 13 6 0.3395 -5.7453 2.1880 14 8 -0.6541 -5.7093 2.8872 15 6 0.8551 -7.0431 1.7024 16 6 2.1827 -7.4035 1.9406 17 6 2.6590 -8.6131 1.4795 18 6 1.8224 -9.4715 0.7881 19 6 0.5042 -9.1231 0.5541 20 6 0.0150 -7.9161 1.0099 21 6 -1.4214 -7.5385 0.7545 22 7 -1.5052 -6.7344 -0.4671 23 6 -2.2767 -7.0010 -1.5417 24 6 -2.0702 -6.0203 -2.4510 25 6 -1.1336 -5.1291 -1.9177 26 7 -0.7941 -5.5560 -0.7284 27 6 2.1040 -4.6188 0.9191 28 6 1.7957 -3.6482 -0.2335 29 1 -0.4850 0.8400 0.0004 30 1 -0.6697 -2.6627 0.7646 31 1 0.1070 -1.3409 1.6750 32 1 -0.3534 -3.4653 3.0284 33 1 1.3408 -2.9098 3.0479 34 1 2.8366 -6.7344 2.4801 35 1 3.6871 -8.8909 1.6588 36 1 2.2002 -10.4176 0.4296 37 1 -0.1435 -9.7974 0.0134 38 1 -2.0192 -8.4424 0.6363 39 1 -1.8002 -6.9600 1.5971 40 1 -2.9415 -7.8445 -1.6547 41 1 -2.5419 -5.9422 -3.4195 42 1 -0.7559 -4.2415 -2.4035 43 1 3.0100 -4.3016 1.4356 44 1 2.2383 -5.6262 0.5251 45 1 0.9983 -4.0559 -0.8548 46 1 2.6924 -3.5003 -0.8353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345551018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:13 Heat of formation + Delta-G solvation = 117.362211 kcal Electronic energy + Delta-G solvation = -30969.348889 eV Core-core repulsion = 27055.244414 eV Total energy + Delta-G solvation = -3914.104475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.98113 -40.10443 -38.38401 -36.62919 -34.15231 -33.69784 -31.62097 -31.04508 -30.73278 -29.82118 -29.58913 -26.98874 -26.14576 -24.16793 -23.10570 -22.70069 -22.01439 -20.85812 -20.48904 -20.16940 -18.80539 -17.43223 -16.97301 -16.38514 -16.16853 -15.77499 -15.36874 -14.80519 -14.67390 -14.43745 -14.14718 -13.98533 -13.62162 -13.52455 -13.33764 -13.20967 -13.13691 -12.95231 -12.69706 -12.59602 -12.25739 -11.96377 -11.74157 -11.56094 -11.28265 -11.16884 -10.78850 -10.61049 -10.45942 -10.24518 -10.05377 -9.87702 -9.74991 -9.43619 -9.07424 -9.05615 -8.90615 -8.49807 -8.32016 -8.10066 -6.56621 -5.76268 -3.21428 0.92581 1.11951 2.20117 2.80193 3.03627 3.21450 3.37674 3.45197 3.46601 3.48362 3.80321 4.38793 4.50205 4.55170 4.72277 4.84395 4.87099 4.97059 5.19797 5.28736 5.39616 5.41557 5.43088 5.55005 5.66852 5.77834 5.83602 5.89033 5.94235 6.02703 6.06038 6.15304 6.20472 6.27060 6.28252 6.35436 6.41512 6.51942 6.63723 6.71844 6.87539 6.97054 7.13350 7.26427 7.39819 7.66392 7.80283 8.00632 8.07724 8.46141 8.60950 9.21910 9.85063 10.44071 11.30682 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.004192 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.414085 B = 6677.204166 C = 7632.096203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.588 5.588 10 C 0.166 3.834 11 C 0.087 3.913 12 N -0.572 5.572 13 C 0.562 3.438 14 O -0.559 6.559 15 C -0.079 4.079 16 C -0.094 4.094 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.106 4.106 20 C -0.067 4.067 21 C 0.160 3.840 22 N -0.371 5.371 23 C 0.041 3.959 24 C -0.274 4.274 25 C 0.046 3.954 26 N -0.259 5.259 27 C 0.093 3.907 28 C 0.132 3.868 29 H 0.253 0.747 30 H 0.026 0.974 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.166 0.834 41 H 0.142 0.858 42 H 0.181 0.819 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.044 0.956 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.633 -20.017 -0.471 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.040 3.960 11 C -0.036 4.036 12 N -0.301 5.301 13 C 0.350 3.650 14 O -0.440 6.440 15 C -0.083 4.083 16 C -0.113 4.113 17 C -0.132 4.132 18 C -0.130 4.130 19 C -0.125 4.125 20 C -0.069 4.069 21 C 0.039 3.961 22 N -0.154 5.154 23 C -0.105 4.105 24 C -0.303 4.303 25 C -0.141 4.141 26 N -0.079 5.079 27 C -0.031 4.031 28 C 0.005 3.995 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.118 0.882 39 H 0.131 0.869 40 H 0.183 0.817 41 H 0.159 0.841 42 H 0.198 0.802 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.062 0.938 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.726 -19.658 1.034 19.698 hybrid contribution -0.049 0.723 -0.887 1.145 sum 0.676 -18.935 0.147 18.948 Atomic orbital electron populations 1.70037 1.05231 1.25374 1.53637 1.25072 0.95230 0.98358 1.00735 0.86265 0.79360 0.84121 0.77247 1.20306 1.21764 1.21621 1.19201 0.92298 0.84692 1.42122 0.91770 1.43930 1.36924 1.01796 1.48444 1.21071 0.89445 0.97565 0.87948 1.22519 0.99596 0.83175 0.98307 1.47797 1.32403 1.06506 1.43425 1.18103 0.83196 0.83611 0.80089 1.90684 1.25609 1.87012 1.40651 1.19899 0.94154 0.95043 0.99189 1.21307 0.93878 0.96990 0.99085 1.21120 0.99989 0.93944 0.98188 1.21208 0.93559 0.99668 0.98523 1.20954 0.96075 0.95912 0.99530 1.19744 0.95128 0.94067 0.97957 1.20770 0.93823 0.95038 0.86424 1.48799 1.33366 1.19827 1.13388 1.22436 0.98385 1.01155 0.88491 1.21456 1.07625 0.98694 1.02574 1.23977 0.97252 1.00068 0.92777 1.77659 1.16964 0.96384 1.16917 1.22478 0.87701 1.00660 0.92287 1.21408 0.98554 0.86999 0.92580 0.93678 0.95602 0.88907 0.90412 0.92347 0.85271 0.85410 0.85655 0.85692 0.88173 0.86854 0.81702 0.84067 0.80207 0.92368 0.91028 0.93813 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.92 11.25 55.49 0.62 -25.29 16 2 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 3 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.25 -6.81 9.57 -15.06 -0.14 -6.95 16 8 H 0.06 1.70 7.88 -52.48 -0.41 1.28 16 9 N -0.59 -14.51 2.96 -171.76 -0.51 -15.02 16 10 C 0.17 4.07 5.50 -3.59 -0.02 4.05 16 11 C 0.09 1.84 6.60 -3.60 -0.02 1.82 16 12 N -0.57 -10.95 2.94 -173.33 -0.51 -11.46 16 13 C 0.56 10.47 6.00 -12.33 -0.07 10.40 16 14 O -0.56 -11.84 14.52 5.32 0.08 -11.76 16 15 C -0.08 -1.20 4.61 -104.96 -0.48 -1.69 16 16 C -0.09 -1.19 7.75 -39.18 -0.30 -1.49 16 17 C -0.11 -1.15 10.03 -39.64 -0.40 -1.55 16 18 C -0.11 -1.05 10.04 -39.49 -0.40 -1.45 16 19 C -0.11 -1.11 9.67 -39.64 -0.38 -1.50 16 20 C -0.07 -0.90 5.35 -104.23 -0.56 -1.46 16 21 C 0.16 2.13 6.17 -5.20 -0.03 2.10 16 22 N -0.37 -5.58 3.67 -62.55 -0.23 -5.81 16 23 C 0.04 0.51 11.45 -17.22 -0.20 0.32 16 24 C -0.27 -3.77 10.80 -40.01 -0.43 -4.20 16 25 C 0.05 0.78 11.28 -17.37 -0.20 0.58 16 26 N -0.26 -4.67 10.43 30.62 0.32 -4.35 16 27 C 0.09 1.67 5.82 -3.37 -0.02 1.65 16 28 C 0.13 2.75 6.69 -3.37 -0.02 2.73 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 32 H 0.08 1.66 6.99 -51.93 -0.36 1.29 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.13 1.54 7.77 -52.49 -0.41 1.13 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.10 0.92 7.99 -51.92 -0.41 0.50 16 39 H 0.11 1.83 5.86 -51.93 -0.30 1.52 16 40 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 42 H 0.18 3.02 8.01 -52.49 -0.42 2.60 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.16 5.29 -51.93 -0.27 0.89 16 45 H 0.04 0.95 5.74 -51.93 -0.30 0.65 16 46 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -33.13 371.47 -9.57 -42.70 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.14 Total: 5.55 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -3.77 Total: 3.41 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.30 Total: -61.94 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.13 -9.57 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345551018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.059 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds