Wall clock time and date at job start Sat Apr 11 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86791 * 120.00092 * 2 1 4 4 H 1.48499 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47161 * 299.99792 * 3 2 1 6 6 H 1.48506 * 109.47259 * 60.00030 * 3 2 1 7 7 C 1.38813 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99825 * 163.48847 * 7 2 1 9 9 N 1.36934 * 120.00603 * 343.50055 * 7 2 1 10 10 C 1.46977 * 120.58673 * 330.33351 * 9 7 2 11 11 C 1.53367 * 108.63238 * 235.24849 * 10 9 7 12 12 N 1.46960 * 108.63822 * 310.57775 * 11 10 9 13 13 C 1.34778 * 120.59442 * 235.20000 * 12 11 10 14 14 O 1.21549 * 120.00196 * 5.51545 * 13 12 11 15 15 C 1.47848 * 119.99640 * 185.50413 * 13 12 11 16 16 C 1.39606 * 120.14400 * 54.43136 * 15 13 12 17 17 C 1.37938 * 119.84950 * 180.29318 * 16 15 13 18 18 C 1.38379 * 120.14722 * 359.67763 * 17 16 15 19 19 C 1.38338 * 120.29076 * 0.02562 * 18 17 16 20 20 C 1.37982 * 120.15013 * 359.97438 * 19 18 17 21 21 C 1.50698 * 120.07657 * 180.02562 * 20 19 18 22 22 N 1.46492 * 109.47265 * 265.92667 * 21 20 19 23 23 C 1.34949 * 126.03869 * 124.71842 * 22 21 20 24 24 C 1.35320 * 107.74167 * 179.83928 * 23 22 21 25 25 C 1.39862 * 107.92286 * 0.42033 * 24 23 22 26 26 N 1.30837 * 108.20420 * 359.73845 * 25 24 23 27 27 C 1.46964 * 118.80901 * 55.48323 * 12 11 10 28 28 C 1.46960 * 120.60152 * 150.36357 * 9 7 2 29 29 H 0.97002 * 120.00109 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.60093 * 115.50625 * 10 9 7 31 31 H 1.08994 * 109.60913 * 354.99540 * 10 9 7 32 32 H 1.09002 * 109.60499 * 190.83300 * 11 10 9 33 33 H 1.09002 * 109.60629 * 70.32816 * 11 10 9 34 34 H 1.07994 * 120.07225 * 359.97438 * 16 15 13 35 35 H 1.07996 * 119.92208 * 179.69528 * 17 16 15 36 36 H 1.08001 * 119.85645 * 180.02562 * 18 17 16 37 37 H 1.08008 * 119.92550 * 179.97438 * 19 18 17 38 38 H 1.09010 * 109.47149 * 25.92712 * 21 20 19 39 39 H 1.09002 * 109.46630 * 145.92278 * 21 20 19 40 40 H 1.07997 * 126.12603 * 359.97438 * 23 22 21 41 41 H 1.08008 * 126.03686 * 180.15895 * 24 23 22 42 42 H 1.07998 * 125.89858 * 179.75884 * 25 24 23 43 43 H 1.08995 * 109.61339 * 64.26577 * 27 12 11 44 44 H 1.09007 * 109.60670 * 184.77455 * 27 12 11 45 45 H 1.08997 * 109.60806 * 244.49420 * 28 9 7 46 46 H 1.09005 * 109.60436 * 4.99910 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0568 -1.2216 -0.2653 9 7 1.3679 -2.3635 0.3378 10 6 0.2385 -2.3476 1.2784 11 6 0.5434 -3.3176 2.4266 12 7 0.9712 -4.6022 1.8552 13 6 0.3395 -5.7453 2.1880 14 8 -0.6541 -5.7093 2.8872 15 6 0.8551 -7.0431 1.7024 16 6 2.1827 -7.4035 1.9406 17 6 2.6590 -8.6131 1.4795 18 6 1.8224 -9.4715 0.7881 19 6 0.5042 -9.1231 0.5541 20 6 0.0150 -7.9161 1.0099 21 6 -1.4214 -7.5385 0.7545 22 7 -1.5052 -6.7344 -0.4671 23 6 -2.2767 -7.0010 -1.5417 24 6 -2.0702 -6.0203 -2.4510 25 6 -1.1336 -5.1291 -1.9177 26 7 -0.7941 -5.5560 -0.7284 27 6 2.1040 -4.6188 0.9191 28 6 1.7957 -3.6482 -0.2335 29 1 -0.4850 0.8400 0.0004 30 1 -0.6697 -2.6627 0.7646 31 1 0.1070 -1.3409 1.6750 32 1 -0.3534 -3.4653 3.0284 33 1 1.3408 -2.9098 3.0479 34 1 2.8366 -6.7344 2.4801 35 1 3.6871 -8.8909 1.6588 36 1 2.2002 -10.4176 0.4296 37 1 -0.1435 -9.7974 0.0134 38 1 -2.0192 -8.4424 0.6363 39 1 -1.8002 -6.9600 1.5971 40 1 -2.9415 -7.8445 -1.6547 41 1 -2.5419 -5.9422 -3.4195 42 1 -0.7559 -4.2415 -2.4035 43 1 3.0100 -4.3016 1.4356 44 1 2.2383 -5.6262 0.5251 45 1 0.9983 -4.0559 -0.8548 46 1 2.6924 -3.5003 -0.8353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345551018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:13 Heat of formation + Delta-G solvation = 97.546323 kcal Electronic energy + Delta-G solvation = -30970.208170 eV Core-core repulsion = 27055.244414 eV Total energy + Delta-G solvation = -3914.963756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.10163 -41.34698 -39.58517 -38.30503 -35.69961 -34.96222 -33.13490 -32.69571 -31.75344 -31.35611 -30.67079 -28.71886 -27.25861 -25.76787 -24.68627 -24.11897 -23.10398 -22.14850 -21.72882 -21.40588 -20.29874 -18.96254 -18.10970 -17.88299 -17.43047 -16.84506 -16.77469 -16.68331 -15.88064 -15.71405 -15.42481 -15.37248 -15.11013 -15.04546 -14.94304 -14.62392 -14.47716 -14.00270 -13.94282 -13.66521 -13.52588 -13.30249 -13.12227 -13.02092 -12.67850 -12.65587 -12.46051 -12.23436 -12.14290 -11.95074 -11.85074 -11.64755 -11.33504 -10.88190 -10.59673 -10.25406 -9.91329 -9.86806 -9.75620 -9.40002 -8.59054 -7.85330 -5.34767 -0.00754 0.28202 1.12945 1.46385 1.48642 1.58982 1.66766 1.80494 2.04325 2.10394 2.51812 2.81856 3.29014 3.43097 3.51492 3.62846 3.70067 4.00106 4.11064 4.16624 4.26858 4.27445 4.29053 4.35941 4.38453 4.50803 4.54306 4.57431 4.61575 4.76599 4.79672 4.80251 4.89744 4.96615 5.01031 5.10076 5.20324 5.34844 5.35774 5.43493 5.47209 5.48870 5.62648 5.68998 5.81843 5.92797 6.27069 6.37676 6.51641 6.91916 7.11883 7.14717 7.81976 8.38413 9.19628 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.004192 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.414085 B = 6677.204166 C = 7632.096203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.260 4.260 8 H 0.071 0.929 9 N -0.600 5.600 10 C 0.186 3.814 11 C 0.102 3.898 12 N -0.578 5.578 13 C 0.564 3.436 14 O -0.594 6.594 15 C -0.112 4.112 16 C -0.105 4.105 17 C -0.108 4.108 18 C -0.100 4.100 19 C -0.101 4.101 20 C -0.081 4.081 21 C 0.156 3.844 22 N -0.375 5.375 23 C 0.057 3.943 24 C -0.283 4.283 25 C 0.020 3.980 26 N -0.303 5.303 27 C 0.110 3.890 28 C 0.129 3.871 29 H 0.249 0.751 30 H -0.014 1.014 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.147 0.853 39 H 0.076 0.924 40 H 0.216 0.784 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.036 0.964 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.227 -23.889 -1.234 24.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.243 4.243 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.390 4.390 8 H 0.089 0.911 9 N -0.323 5.323 10 C 0.059 3.941 11 C -0.023 4.023 12 N -0.307 5.307 13 C 0.354 3.646 14 O -0.477 6.477 15 C -0.115 4.115 16 C -0.123 4.123 17 C -0.126 4.126 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.083 4.083 21 C 0.036 3.964 22 N -0.158 5.158 23 C -0.088 4.088 24 C -0.312 4.312 25 C -0.166 4.166 26 N -0.125 5.125 27 C -0.014 4.014 28 C 0.003 3.997 29 H 0.058 0.942 30 H 0.004 0.996 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.147 0.853 35 H 0.177 0.823 36 H 0.182 0.818 37 H 0.175 0.825 38 H 0.165 0.835 39 H 0.094 0.906 40 H 0.233 0.767 41 H 0.181 0.819 42 H 0.180 0.820 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.054 0.946 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.358 -23.563 0.262 23.682 hybrid contribution -0.581 1.783 -0.680 1.994 sum 1.777 -21.780 -0.418 21.857 Atomic orbital electron populations 1.70210 1.06857 1.25713 1.55279 1.25836 0.95890 1.01551 1.00999 0.85213 0.78773 0.79872 0.76590 1.18770 1.22076 1.21956 1.19554 0.92692 0.85589 1.41194 0.91128 1.44102 1.36578 1.02753 1.48902 1.20653 0.88247 0.96628 0.88590 1.22120 0.99576 0.83838 0.96753 1.47795 1.33014 1.05997 1.43903 1.18741 0.82227 0.84638 0.78999 1.90650 1.27181 1.87734 1.42117 1.19733 0.95920 0.93673 1.02205 1.21421 0.92787 0.98468 0.99643 1.21502 1.01593 0.92606 0.96925 1.21716 0.92835 1.00604 0.96576 1.21322 0.97146 0.94818 0.98678 1.19874 0.94802 0.95059 0.98544 1.20921 0.94989 0.95760 0.84699 1.48976 1.33258 1.19137 1.14398 1.23178 0.97297 1.01637 0.86729 1.21735 1.07181 0.98358 1.03954 1.23977 0.98819 1.00511 0.93278 1.77565 1.19009 0.98371 1.17509 1.22336 0.87394 1.00820 0.90823 1.21536 0.98375 0.85985 0.93852 0.94230 0.99572 0.91870 0.91343 0.91455 0.85290 0.82297 0.81847 0.82462 0.83483 0.90601 0.76733 0.81894 0.82037 0.91260 0.88833 0.94649 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 11.25 21.65 0.24 -56.37 16 2 C -0.05 -2.66 4.92 84.86 0.42 -2.24 16 3 Si 0.97 45.19 29.58 68.60 2.03 47.22 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.26 -14.32 9.57 84.03 0.80 -13.51 16 8 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 9 N -0.60 -30.86 2.96 -697.34 -2.06 -32.92 16 10 C 0.19 9.74 5.50 86.41 0.48 10.22 16 11 C 0.10 4.52 6.60 86.41 0.57 5.09 16 12 N -0.58 -22.88 2.94 -820.58 -2.41 -25.29 16 13 C 0.56 21.62 6.00 86.79 0.52 22.14 16 14 O -0.59 -26.50 14.52 -3.87 -0.06 -26.55 16 15 C -0.11 -3.30 4.61 -20.09 -0.09 -3.40 16 16 C -0.10 -2.42 7.75 22.53 0.17 -2.25 16 17 C -0.11 -1.72 10.03 22.23 0.22 -1.49 16 18 C -0.10 -1.34 10.04 22.33 0.22 -1.12 16 19 C -0.10 -1.67 9.67 22.23 0.22 -1.45 16 20 C -0.08 -2.01 5.35 -19.61 -0.10 -2.11 16 21 C 0.16 3.95 6.17 85.63 0.53 4.48 16 22 N -0.37 -10.92 3.67 -351.80 -1.29 -12.21 16 23 C 0.06 1.29 11.45 83.54 0.96 2.25 16 24 C -0.28 -7.57 10.80 21.99 0.24 -7.33 16 25 C 0.02 0.71 11.28 85.23 0.96 1.67 16 26 N -0.30 -11.32 10.43 -57.03 -0.59 -11.91 16 27 C 0.11 3.94 5.82 86.56 0.50 4.44 16 28 C 0.13 5.52 6.69 86.56 0.58 6.10 16 29 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 30 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 31 H 0.06 3.66 6.07 -2.39 -0.01 3.65 16 32 H 0.07 3.14 6.99 -2.39 -0.02 3.13 16 33 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.13 2.88 7.77 -2.91 -0.02 2.86 16 35 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 37 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 38 H 0.15 2.16 7.99 -2.38 -0.02 2.14 16 39 H 0.08 2.51 5.86 -2.39 -0.01 2.50 16 40 H 0.22 2.51 8.06 -2.91 -0.02 2.48 16 41 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 42 H 0.16 6.02 8.01 -2.91 -0.02 6.00 16 43 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.09 2.96 5.29 -2.38 -0.01 2.95 16 45 H 0.04 1.61 5.74 -2.39 -0.01 1.60 16 46 H 0.06 2.59 7.93 -2.38 -0.02 2.57 16 Total: -1.00 -78.39 371.47 4.04 -74.34 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 1.00 Total: 22.23 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 7.19 Total: 21.47 kcal Atomic # 7 Polarization: -132.59 SS G_CDS: -6.12 Total: -138.71 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.06 Total: -26.55 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -78.39 4.04 -74.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345551018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.890 kcal (2) G-P(sol) polarization free energy of solvation -78.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds