Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86794 * 120.00062 * 2 1 4 4 H 1.48507 * 109.47005 * 240.00230 * 3 2 1 5 5 H 1.48502 * 109.47194 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47123 * 120.00144 * 3 2 1 7 7 C 1.38814 * 119.99527 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99183 * 197.57568 * 7 2 1 9 9 N 1.36932 * 120.00285 * 17.56525 * 7 2 1 10 10 C 1.46962 * 120.59341 * 208.16629 * 9 7 2 11 11 C 1.53371 * 108.63671 * 235.20758 * 10 9 7 12 12 N 1.46959 * 108.63814 * 310.57914 * 11 10 9 13 13 C 1.34771 * 120.59679 * 235.20617 * 12 11 10 14 14 O 1.21289 * 120.00040 * 359.97438 * 13 12 11 15 15 C 1.50705 * 120.00119 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.46736 * 59.99768 * 15 13 12 17 17 C 1.50706 * 109.46882 * 179.97438 * 15 13 12 18 18 C 1.38240 * 119.99665 * 239.99823 * 17 15 13 19 19 C 1.38230 * 119.99954 * 179.97438 * 18 17 15 20 20 C 1.38234 * 119.99732 * 359.97438 * 19 18 17 21 21 C 1.38241 * 120.00300 * 359.97438 * 20 19 18 22 22 C 1.38229 * 120.00108 * 59.90884 * 17 15 13 23 23 N 1.46500 * 109.46984 * 299.99714 * 15 13 12 24 24 C 1.34951 * 126.03430 * 324.99873 * 23 15 13 25 25 C 1.35318 * 107.74125 * 179.97438 * 24 23 15 26 26 C 1.39868 * 107.92387 * 359.97438 * 25 24 23 27 27 N 1.30844 * 108.19763 * 359.74362 * 26 25 24 28 28 C 1.46965 * 118.81143 * 55.47546 * 12 11 10 29 29 C 1.46966 * 120.59460 * 28.15659 * 9 7 2 30 30 H 0.96997 * 119.99749 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.60578 * 115.46404 * 10 9 7 32 32 H 1.09000 * 109.61129 * 354.95761 * 10 9 7 33 33 H 1.09004 * 109.60759 * 190.83556 * 11 10 9 34 34 H 1.09002 * 109.60843 * 70.33014 * 11 10 9 35 35 H 1.07999 * 120.00032 * 0.25538 * 18 17 15 36 36 H 1.07999 * 120.00458 * 179.97438 * 19 18 17 37 37 H 1.08000 * 120.00187 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99880 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.00376 * 0.09039 * 22 17 15 40 40 H 1.07994 * 126.12869 * 359.95587 * 24 23 15 41 41 H 1.08001 * 126.03614 * 180.02562 * 25 24 23 42 42 H 1.07999 * 125.89997 * 179.97438 * 26 25 24 43 43 H 1.09008 * 109.60667 * 64.26418 * 28 12 11 44 44 H 1.08996 * 109.61281 * 184.77245 * 28 12 11 45 45 H 1.08999 * 109.60439 * 244.53608 * 29 9 7 46 46 H 1.09000 * 109.60627 * 5.04192 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0525 -1.2241 0.2819 9 7 1.3734 -2.3603 -0.3589 10 6 1.8128 -3.6539 0.1826 11 6 2.1162 -4.5976 -0.9877 12 7 0.9810 -4.5690 -1.9205 13 6 0.3542 -5.7088 -2.2733 14 8 0.7263 -6.7707 -1.8205 15 6 -0.8082 -5.6640 -3.2314 16 1 -0.4807 -5.2390 -4.1803 17 6 -1.3255 -7.0611 -3.4592 18 6 -1.3267 -7.5985 -4.7329 19 6 -1.8007 -8.8801 -4.9417 20 6 -2.2729 -9.6245 -3.8769 21 6 -2.2706 -9.0874 -2.6031 22 6 -1.7969 -7.8057 -2.3943 23 7 -1.8749 -4.8338 -2.6665 24 6 -2.1985 -4.7379 -1.3599 25 6 -3.2327 -3.8716 -1.2539 26 6 -3.5516 -3.4225 -2.5395 27 7 -2.7344 -3.9942 -3.3865 28 6 0.5452 -3.2760 -2.4665 29 6 0.2382 -2.3317 -1.2919 30 1 -0.4849 0.8400 -0.0004 31 1 1.0218 -4.0796 0.8002 32 1 2.7124 -3.5131 0.7818 33 1 2.2565 -5.6116 -0.6131 34 1 3.0193 -4.2661 -1.5002 35 1 -0.9533 -7.0188 -5.5640 36 1 -1.8021 -9.2999 -5.9368 37 1 -2.6436 -10.6257 -4.0401 38 1 -2.6399 -9.6689 -1.7713 39 1 -1.7959 -7.3859 -1.3992 40 1 -1.7184 -5.2592 -0.5451 41 1 -3.7244 -3.5782 -0.3381 42 1 -4.3344 -2.7217 -2.7894 43 1 1.3391 -2.8525 -3.0819 44 1 -0.3522 -3.4170 -3.0689 45 1 -0.6648 -2.6632 -0.7793 46 1 0.0979 -1.3178 -1.6664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353633427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = 125.199799 kcal Electronic energy + Delta-G solvation = -30766.880179 eV Core-core repulsion = 26853.115567 eV Total energy + Delta-G solvation = -3913.764612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48074 -39.74460 -38.92031 -36.91992 -34.32632 -33.83660 -31.41931 -31.07591 -30.47658 -30.19261 -29.76404 -27.57860 -26.33193 -23.79092 -23.00687 -22.77988 -21.95766 -21.47973 -20.74137 -20.09058 -18.81160 -17.77247 -17.08021 -16.62369 -16.17133 -15.91835 -15.33488 -14.90415 -14.70496 -14.63449 -14.48298 -14.03135 -13.74094 -13.54641 -13.43943 -13.41352 -13.28434 -12.99383 -12.72828 -12.61290 -12.43385 -12.23256 -11.74156 -11.40301 -11.31562 -11.14843 -10.86264 -10.81494 -10.59956 -10.54848 -10.29984 -10.10656 -9.91844 -9.75768 -9.20545 -8.97427 -8.91047 -8.66003 -8.40558 -8.29170 -6.76309 -5.88495 -3.33241 1.11563 1.35146 2.07108 2.15665 3.04800 3.12012 3.15665 3.32814 3.39247 3.40109 3.78463 4.36193 4.41442 4.44917 4.67452 4.87321 4.91988 4.99803 5.09459 5.21570 5.23671 5.30417 5.38669 5.51008 5.69644 5.74259 5.75914 5.81508 5.85058 5.92744 6.02471 6.04374 6.07938 6.25488 6.29154 6.32475 6.33633 6.40496 6.44795 6.67125 6.78470 6.85932 6.87692 7.10168 7.16415 7.43472 7.63807 7.71133 7.89108 8.21192 8.32026 9.08232 9.70709 10.27236 11.18822 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.003614 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.154407 B = 7746.411595 C = 8536.244863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.006 3.994 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.590 5.590 10 C 0.133 3.867 11 C 0.093 3.907 12 N -0.581 5.581 13 C 0.502 3.498 14 O -0.533 6.533 15 C 0.193 3.807 16 H 0.125 0.875 17 C -0.089 4.089 18 C -0.095 4.095 19 C -0.126 4.126 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.068 4.068 23 N -0.363 5.363 24 C 0.070 3.930 25 C -0.259 4.259 26 C 0.055 3.945 27 N -0.294 5.294 28 C 0.067 3.933 29 C 0.165 3.835 30 H 0.256 0.744 31 H 0.023 0.977 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.162 0.838 41 H 0.147 0.853 42 H 0.182 0.818 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.032 0.968 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.759 -13.861 -7.427 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.006 3.994 11 C -0.031 4.031 12 N -0.312 5.312 13 C 0.286 3.714 14 O -0.410 6.410 15 C 0.087 3.913 16 H 0.142 0.858 17 C -0.090 4.090 18 C -0.114 4.114 19 C -0.144 4.144 20 C -0.130 4.130 21 C -0.142 4.142 22 C -0.086 4.086 23 N -0.147 5.147 24 C -0.075 4.075 25 C -0.288 4.288 26 C -0.132 4.132 27 N -0.115 5.115 28 C -0.057 4.057 29 C 0.038 3.962 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.180 0.820 41 H 0.165 0.835 42 H 0.199 0.801 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.050 0.950 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.193 -14.415 -8.413 17.480 hybrid contribution 0.262 1.158 0.895 1.487 sum -4.931 -13.257 -7.518 16.018 Atomic orbital electron populations 1.70009 1.05206 1.25853 1.52971 1.25062 0.95303 0.98490 1.00438 0.86363 0.78956 0.83214 0.78172 1.20993 1.21543 1.20829 1.19134 0.92825 0.84737 1.42317 0.91571 1.43988 1.36666 1.01451 1.49155 1.21276 0.98499 0.87117 0.92526 1.22335 0.87464 1.01332 0.91932 1.48119 1.32267 1.06610 1.44199 1.20131 0.84301 0.84473 0.82517 1.90715 1.66586 1.29166 1.54515 1.20020 0.83980 0.88427 0.98862 0.85768 1.19435 1.01340 0.93847 0.94413 1.20962 0.98915 0.95814 0.95687 1.21044 0.99943 0.94372 0.99071 1.21175 0.99188 0.99672 0.92928 1.21099 1.00455 0.95455 0.97228 1.20899 0.95374 0.94071 0.98276 1.48410 1.26898 1.34572 1.04835 1.22360 0.97791 1.00304 0.87032 1.21423 1.03110 1.05401 0.98845 1.23829 0.98625 0.99212 0.91524 1.77332 1.05310 1.08561 1.20268 1.23048 0.99494 0.83648 0.99474 1.21207 0.89330 0.98271 0.87385 0.93396 0.95938 0.91375 0.89818 0.91587 0.85866 0.85868 0.86074 0.85933 0.86389 0.82027 0.83527 0.80076 0.91832 0.90321 0.94988 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.83 11.20 55.49 0.62 -24.21 16 2 C 0.01 0.17 4.90 -17.43 -0.09 0.09 16 3 Si 0.90 20.95 29.59 -169.99 -5.03 15.92 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.26 -6.83 9.58 -15.06 -0.14 -6.97 16 8 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -14.02 2.97 -171.77 -0.51 -14.53 16 10 C 0.13 2.68 6.67 -3.60 -0.02 2.65 16 11 C 0.09 1.64 6.59 -3.60 -0.02 1.62 16 12 N -0.58 -10.19 2.94 -172.21 -0.51 -10.70 16 13 C 0.50 8.38 6.15 -10.99 -0.07 8.31 16 14 O -0.53 -9.86 14.51 5.55 0.08 -9.78 16 15 C 0.19 2.84 2.32 -70.23 -0.16 2.68 16 16 H 0.12 1.70 7.64 -51.93 -0.40 1.31 16 17 C -0.09 -1.24 4.60 -104.62 -0.48 -1.72 16 18 C -0.10 -1.15 9.67 -39.58 -0.38 -1.53 16 19 C -0.13 -1.34 10.05 -39.59 -0.40 -1.73 16 20 C -0.11 -1.16 10.05 -39.58 -0.40 -1.56 16 21 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 22 C -0.07 -0.93 8.05 -39.59 -0.32 -1.25 16 23 N -0.36 -5.56 1.80 -57.12 -0.10 -5.66 16 24 C 0.07 1.08 8.16 -17.22 -0.14 0.94 16 25 C -0.26 -3.83 10.75 -40.01 -0.43 -4.26 16 26 C 0.05 0.79 12.03 -17.36 -0.21 0.58 16 27 N -0.29 -4.63 12.11 30.63 0.37 -4.26 16 28 C 0.07 1.25 6.00 -3.37 -0.02 1.23 16 29 C 0.16 3.70 5.53 -3.37 -0.02 3.68 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 33 H 0.08 1.42 6.99 -51.93 -0.36 1.05 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.12 1.25 7.95 -52.49 -0.42 0.83 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.67 6.96 -52.49 -0.37 1.31 16 40 H 0.16 2.47 7.65 -52.49 -0.40 2.07 16 41 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 42 H 0.18 2.04 8.06 -52.49 -0.42 1.61 16 43 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 44 H 0.08 1.39 4.60 -51.93 -0.24 1.15 16 45 H 0.03 0.76 6.95 -51.93 -0.36 0.40 16 46 H 0.10 2.50 5.99 -51.93 -0.31 2.19 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -30.38 371.14 -9.38 -39.76 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.20 Total: 6.96 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -3.70 Total: 0.90 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.13 Total: -59.36 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.38 -9.38 -39.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353633427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.960 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds