Wall clock time and date at job start Sat Apr 11 2020 06:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86794 * 120.00062 * 2 1 4 4 H 1.48507 * 109.47005 * 240.00230 * 3 2 1 5 5 H 1.48502 * 109.47194 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47123 * 120.00144 * 3 2 1 7 7 C 1.38814 * 119.99527 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99183 * 197.57568 * 7 2 1 9 9 N 1.36932 * 120.00285 * 17.56525 * 7 2 1 10 10 C 1.46962 * 120.59341 * 208.16629 * 9 7 2 11 11 C 1.53371 * 108.63671 * 235.20758 * 10 9 7 12 12 N 1.46959 * 108.63814 * 310.57914 * 11 10 9 13 13 C 1.34771 * 120.59679 * 235.20617 * 12 11 10 14 14 O 1.21289 * 120.00040 * 359.97438 * 13 12 11 15 15 C 1.50705 * 120.00119 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.46736 * 59.99768 * 15 13 12 17 17 C 1.50706 * 109.46882 * 179.97438 * 15 13 12 18 18 C 1.38240 * 119.99665 * 239.99823 * 17 15 13 19 19 C 1.38230 * 119.99954 * 179.97438 * 18 17 15 20 20 C 1.38234 * 119.99732 * 359.97438 * 19 18 17 21 21 C 1.38241 * 120.00300 * 359.97438 * 20 19 18 22 22 C 1.38229 * 120.00108 * 59.90884 * 17 15 13 23 23 N 1.46500 * 109.46984 * 299.99714 * 15 13 12 24 24 C 1.34951 * 126.03430 * 324.99873 * 23 15 13 25 25 C 1.35318 * 107.74125 * 179.97438 * 24 23 15 26 26 C 1.39868 * 107.92387 * 359.97438 * 25 24 23 27 27 N 1.30844 * 108.19763 * 359.74362 * 26 25 24 28 28 C 1.46965 * 118.81143 * 55.47546 * 12 11 10 29 29 C 1.46966 * 120.59460 * 28.15659 * 9 7 2 30 30 H 0.96997 * 119.99749 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.60578 * 115.46404 * 10 9 7 32 32 H 1.09000 * 109.61129 * 354.95761 * 10 9 7 33 33 H 1.09004 * 109.60759 * 190.83556 * 11 10 9 34 34 H 1.09002 * 109.60843 * 70.33014 * 11 10 9 35 35 H 1.07999 * 120.00032 * 0.25538 * 18 17 15 36 36 H 1.07999 * 120.00458 * 179.97438 * 19 18 17 37 37 H 1.08000 * 120.00187 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99880 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.00376 * 0.09039 * 22 17 15 40 40 H 1.07994 * 126.12869 * 359.95587 * 24 23 15 41 41 H 1.08001 * 126.03614 * 180.02562 * 25 24 23 42 42 H 1.07999 * 125.89997 * 179.97438 * 26 25 24 43 43 H 1.09008 * 109.60667 * 64.26418 * 28 12 11 44 44 H 1.08996 * 109.61281 * 184.77245 * 28 12 11 45 45 H 1.08999 * 109.60439 * 244.53608 * 29 9 7 46 46 H 1.09000 * 109.60627 * 5.04192 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0525 -1.2241 0.2819 9 7 1.3734 -2.3603 -0.3589 10 6 1.8128 -3.6539 0.1826 11 6 2.1162 -4.5976 -0.9877 12 7 0.9810 -4.5690 -1.9205 13 6 0.3542 -5.7088 -2.2733 14 8 0.7263 -6.7707 -1.8205 15 6 -0.8082 -5.6640 -3.2314 16 1 -0.4807 -5.2390 -4.1803 17 6 -1.3255 -7.0611 -3.4592 18 6 -1.3267 -7.5985 -4.7329 19 6 -1.8007 -8.8801 -4.9417 20 6 -2.2729 -9.6245 -3.8769 21 6 -2.2706 -9.0874 -2.6031 22 6 -1.7969 -7.8057 -2.3943 23 7 -1.8749 -4.8338 -2.6665 24 6 -2.1985 -4.7379 -1.3599 25 6 -3.2327 -3.8716 -1.2539 26 6 -3.5516 -3.4225 -2.5395 27 7 -2.7344 -3.9942 -3.3865 28 6 0.5452 -3.2760 -2.4665 29 6 0.2382 -2.3317 -1.2919 30 1 -0.4849 0.8400 -0.0004 31 1 1.0218 -4.0796 0.8002 32 1 2.7124 -3.5131 0.7818 33 1 2.2565 -5.6116 -0.6131 34 1 3.0193 -4.2661 -1.5002 35 1 -0.9533 -7.0188 -5.5640 36 1 -1.8021 -9.2999 -5.9368 37 1 -2.6436 -10.6257 -4.0401 38 1 -2.6399 -9.6689 -1.7713 39 1 -1.7959 -7.3859 -1.3992 40 1 -1.7184 -5.2592 -0.5451 41 1 -3.7244 -3.5782 -0.3381 42 1 -4.3344 -2.7217 -2.7894 43 1 1.3391 -2.8525 -3.0819 44 1 -0.3522 -3.4170 -3.0689 45 1 -0.6648 -2.6632 -0.7793 46 1 0.0979 -1.3178 -1.6664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353633427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:29 Heat of formation + Delta-G solvation = 109.554969 kcal Electronic energy + Delta-G solvation = -30767.558590 eV Core-core repulsion = 26853.115567 eV Total energy + Delta-G solvation = -3914.443022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.68862 -41.01153 -39.97458 -38.49989 -35.79214 -35.24151 -33.18857 -31.99742 -31.89264 -31.47299 -30.92774 -29.11368 -27.71765 -25.52083 -24.59436 -23.70605 -23.08340 -22.80974 -21.88829 -21.50177 -20.27505 -19.19113 -18.29916 -17.91758 -17.71812 -17.06264 -16.77722 -16.38207 -16.18660 -15.69915 -15.69390 -15.41243 -15.27872 -15.12033 -14.88665 -14.78344 -14.38723 -14.11312 -14.09123 -13.63609 -13.55344 -13.49342 -13.34742 -13.21683 -12.66621 -12.56259 -12.30251 -12.27537 -12.06743 -12.01207 -11.91969 -11.75969 -11.71618 -11.16903 -10.59949 -10.39239 -9.98797 -9.87119 -9.82659 -9.49815 -8.67579 -7.88541 -5.36326 0.17867 0.46611 0.83555 0.95405 1.48334 1.50454 1.56728 1.73448 1.85613 1.98487 2.50338 2.80185 3.13878 3.26094 3.39264 3.53324 3.57566 3.85659 3.97275 4.09474 4.12723 4.15765 4.17919 4.23475 4.30104 4.47336 4.53657 4.55722 4.61346 4.65506 4.67964 4.73832 4.84678 4.93638 5.02131 5.07708 5.15398 5.16882 5.41935 5.47412 5.51839 5.55189 5.58057 5.63522 5.74158 5.91710 6.02610 6.21013 6.34628 6.71252 6.82663 7.10210 7.77862 8.31156 9.16119 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.003614 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.154407 B = 7746.411595 C = 8536.244863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.041 4.041 3 Si 0.965 3.035 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.271 4.271 8 H 0.069 0.931 9 N -0.606 5.606 10 C 0.134 3.866 11 C 0.103 3.897 12 N -0.585 5.585 13 C 0.509 3.491 14 O -0.548 6.548 15 C 0.196 3.804 16 H 0.135 0.865 17 C -0.109 4.109 18 C -0.105 4.105 19 C -0.125 4.125 20 C -0.109 4.109 21 C -0.133 4.133 22 C -0.091 4.091 23 N -0.363 5.363 24 C 0.059 3.941 25 C -0.267 4.267 26 C 0.053 3.947 27 N -0.310 5.310 28 C 0.087 3.913 29 C 0.178 3.822 30 H 0.251 0.749 31 H 0.013 0.987 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.139 0.861 39 H 0.102 0.898 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.211 0.789 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.013 0.987 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 -15.156 -8.960 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.238 4.238 3 Si 0.793 3.207 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.401 4.401 8 H 0.086 0.914 9 N -0.330 5.330 10 C 0.007 3.993 11 C -0.020 4.020 12 N -0.317 5.317 13 C 0.294 3.706 14 O -0.425 6.425 15 C 0.091 3.909 16 H 0.153 0.847 17 C -0.111 4.111 18 C -0.124 4.124 19 C -0.143 4.143 20 C -0.127 4.127 21 C -0.151 4.151 22 C -0.109 4.109 23 N -0.147 5.147 24 C -0.086 4.086 25 C -0.296 4.296 26 C -0.133 4.133 27 N -0.130 5.130 28 C -0.037 4.037 29 C 0.052 3.948 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.157 0.843 36 H 0.172 0.828 37 H 0.170 0.830 38 H 0.157 0.843 39 H 0.120 0.880 40 H 0.174 0.826 41 H 0.174 0.826 42 H 0.228 0.772 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.031 0.969 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.077 -15.743 -9.950 19.304 hybrid contribution 0.195 1.453 1.417 2.039 sum -4.881 -14.291 -8.533 17.345 Atomic orbital electron populations 1.70154 1.06442 1.26056 1.54307 1.25751 0.96001 1.01283 1.00752 0.85392 0.77629 0.79438 0.78235 1.20497 1.22050 1.20323 1.19443 0.93127 0.85801 1.41686 0.91372 1.44212 1.36776 1.02102 1.49867 1.21350 0.98293 0.86081 0.93543 1.22176 0.87773 1.01023 0.91054 1.48096 1.32529 1.06519 1.44517 1.20417 0.84288 0.83717 0.82197 1.90701 1.67068 1.29658 1.55089 1.20008 0.83155 0.89467 0.98269 0.84720 1.19477 1.02768 0.93375 0.95459 1.21257 0.98984 0.96803 0.95338 1.21458 0.98548 0.93658 1.00617 1.21585 0.98011 1.00927 0.92168 1.21381 1.00181 0.94835 0.98726 1.20933 0.96970 0.95323 0.97697 1.48443 1.26989 1.34652 1.04621 1.22396 0.98275 1.00721 0.87225 1.21666 1.03043 1.05238 0.99660 1.24337 0.98821 0.99103 0.91019 1.77294 1.05863 1.09050 1.20834 1.22695 1.00020 0.83273 0.97707 1.20899 0.88483 0.97284 0.88173 0.93941 0.96950 0.90650 0.88807 0.90770 0.84256 0.82827 0.82980 0.84300 0.88026 0.82614 0.82576 0.77235 0.91628 0.89246 0.96874 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.26 11.20 21.65 0.24 -52.02 16 2 C -0.04 -2.21 4.90 84.86 0.42 -1.80 16 3 Si 0.96 43.32 29.59 68.60 2.03 45.35 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.27 -14.26 9.58 84.03 0.80 -13.45 16 8 H 0.07 3.49 7.89 -2.91 -0.02 3.47 16 9 N -0.61 -29.14 2.97 -697.34 -2.07 -31.21 16 10 C 0.13 5.39 6.67 86.42 0.58 5.97 16 11 C 0.10 3.57 6.59 86.42 0.57 4.14 16 12 N -0.59 -20.32 2.94 -817.15 -2.40 -22.72 16 13 C 0.51 16.80 6.15 87.66 0.54 17.34 16 14 O -0.55 -20.06 14.51 -3.06 -0.04 -20.10 16 15 C 0.20 5.69 2.32 43.50 0.10 5.79 16 16 H 0.14 3.55 7.64 -2.39 -0.02 3.54 16 17 C -0.11 -2.96 4.60 -19.86 -0.09 -3.05 16 18 C -0.11 -2.33 9.67 22.27 0.22 -2.12 16 19 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 20 C -0.11 -1.96 10.05 22.27 0.22 -1.74 16 21 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 22 C -0.09 -2.47 8.05 22.27 0.18 -2.29 16 23 N -0.36 -11.10 1.80 -334.64 -0.60 -11.70 16 24 C 0.06 1.86 8.16 83.54 0.68 2.54 16 25 C -0.27 -7.98 10.75 21.99 0.24 -7.75 16 26 C 0.05 1.51 12.03 85.23 1.03 2.53 16 27 N -0.31 -9.59 12.11 -57.02 -0.69 -10.28 16 28 C 0.09 3.23 6.00 86.56 0.52 3.75 16 29 C 0.18 8.17 5.53 86.56 0.48 8.65 16 30 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.08 2.89 7.93 -2.39 -0.02 2.87 16 33 H 0.09 3.08 6.99 -2.39 -0.02 3.07 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.14 2.51 7.95 -2.91 -0.02 2.49 16 36 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 37 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 38 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.10 3.00 6.96 -2.91 -0.02 2.98 16 40 H 0.16 5.01 7.65 -2.91 -0.02 4.99 16 41 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 42 H 0.21 4.42 8.06 -2.91 -0.02 4.40 16 43 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.09 3.13 4.60 -2.39 -0.01 3.12 16 45 H 0.01 0.65 6.95 -2.39 -0.02 0.63 16 46 H 0.07 3.44 5.99 -2.39 -0.01 3.43 16 Total: -1.00 -65.30 371.14 4.37 -60.92 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.99 Total: 27.98 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 6.92 Total: 13.79 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -5.52 Total: -127.94 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.04 Total: -20.10 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -65.30 4.37 -60.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353633427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.476 kcal (2) G-P(sol) polarization free energy of solvation -65.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds