Wall clock time and date at job start Sat Apr 11 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99439 * 2 1 4 4 H 1.48507 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47448 * 300.00121 * 3 2 1 6 6 H 1.48505 * 109.47257 * 60.00547 * 3 2 1 7 7 C 1.37872 * 120.00555 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00571 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99649 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46698 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00196 * 95.27912 * 10 9 7 12 12 C 1.50704 * 109.47000 * 269.99706 * 11 10 9 13 13 C 1.38675 * 120.41642 * 269.72128 * 12 11 10 14 14 C 1.38624 * 118.42145 * 179.78068 * 13 12 11 15 15 C 1.38234 * 119.15916 * 0.51397 * 14 13 12 16 16 N 1.31852 * 120.76220 * 359.72437 * 15 14 13 17 17 C 1.31885 * 121.72622 * 0.02562 * 16 15 14 18 18 C 1.34778 * 119.99773 * 275.27253 * 10 9 7 19 19 O 1.21278 * 120.00082 * 174.75674 * 18 10 9 20 20 C 1.50696 * 120.00120 * 354.75861 * 18 10 9 21 21 H 1.09010 * 109.46620 * 34.52388 * 20 18 10 22 22 C 1.53150 * 109.47018 * 274.53819 * 20 18 10 23 23 C 1.53401 * 109.24064 * 170.50329 * 22 20 18 24 24 C 1.51038 * 108.21162 * 48.81927 * 23 22 20 25 25 N 1.30092 * 127.39267 * 164.06618 * 24 23 22 26 26 C 1.34293 * 109.21366 * 180.02562 * 25 24 23 27 27 C 1.34859 * 108.06835 * 359.96081 * 26 25 24 28 28 N 1.35426 * 123.98293 * 344.06148 * 24 23 22 29 29 C 1.46477 * 124.81961 * 359.85075 * 28 24 23 30 30 H 0.96998 * 120.00372 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47116 * 59.99937 * 9 7 2 32 32 H 1.09003 * 109.47052 * 299.99903 * 9 7 2 33 33 H 1.08997 * 109.47140 * 29.99385 * 11 10 9 34 34 H 1.08996 * 109.47261 * 149.99610 * 11 10 9 35 35 H 1.08003 * 120.78913 * 0.02562 * 13 12 11 36 36 H 1.08002 * 120.42058 * 180.21926 * 14 13 12 37 37 H 1.07995 * 119.62050 * 179.74860 * 15 14 13 38 38 H 1.08003 * 119.61879 * 180.02562 * 17 16 15 39 39 H 1.09003 * 109.50385 * 290.42934 * 22 20 18 40 40 H 1.08998 * 109.51311 * 50.52539 * 22 20 18 41 41 H 1.09004 * 109.71456 * 168.49527 * 23 22 20 42 42 H 1.08995 * 109.71411 * 289.13667 * 23 22 20 43 43 H 1.07998 * 125.96428 * 179.97438 * 26 25 24 44 44 H 1.08009 * 126.65170 * 179.97438 * 27 26 25 45 45 H 1.09000 * 109.57974 * 223.09722 * 29 28 24 46 46 H 1.09007 * 109.57970 * 102.68806 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 2.5896 -4.2457 1.2618 12 6 3.7973 -3.5434 1.8270 13 6 5.0753 -3.9710 1.4995 14 6 6.1567 -3.2920 2.0392 15 6 5.9268 -2.2257 2.8883 16 7 4.6974 -1.8499 3.1815 17 6 3.6453 -2.4692 2.6827 18 6 2.7236 -4.0545 -1.1636 19 8 3.5821 -4.9111 -1.1567 20 6 2.2387 -3.4842 -2.4715 21 1 1.9979 -2.4291 -2.3407 22 6 0.9870 -4.2409 -2.9255 23 6 0.3620 -3.5121 -4.1219 24 6 1.4548 -3.2278 -5.1249 25 7 1.3132 -2.8930 -6.3740 26 6 2.5256 -2.7288 -6.9278 27 6 3.4544 -2.9716 -5.9806 28 7 2.7775 -3.2874 -4.8404 29 6 3.3367 -3.6298 -3.5306 30 1 -0.4850 0.8400 0.0004 31 1 0.6248 -2.5563 -0.8920 32 1 0.6241 -2.5575 0.8880 33 1 1.7643 -4.1762 1.9704 34 1 2.8289 -5.2942 1.0845 35 1 5.2245 -4.8105 0.8367 36 1 7.1660 -3.5953 1.8031 37 1 6.7638 -1.6940 3.3162 38 1 2.6534 -2.1324 2.9455 39 1 1.2608 -5.2543 -3.2191 40 1 0.2686 -4.2806 -2.1068 41 1 -0.4013 -4.1424 -4.5785 42 1 -0.0848 -2.5752 -3.7893 43 1 2.7223 -2.4506 -7.9526 44 1 4.5266 -2.9257 -6.1023 45 1 4.1609 -2.9555 -3.2977 46 1 3.6966 -4.6587 -3.5447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364396846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:42 Heat of formation + Delta-G solvation = 57.588807 kcal Electronic energy + Delta-G solvation = -30286.572649 eV Core-core repulsion = 26369.876204 eV Total energy + Delta-G solvation = -3916.696444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.11618 -40.10659 -39.26767 -36.05381 -35.41198 -33.11792 -33.00610 -32.10677 -31.29907 -29.80947 -28.28175 -27.71015 -26.18391 -24.23764 -23.35986 -23.07329 -22.52288 -21.57336 -21.15552 -19.17677 -18.25451 -17.19660 -16.91533 -16.66077 -16.34248 -15.79709 -15.76976 -15.25350 -15.14946 -14.54162 -14.38233 -14.22127 -13.92482 -13.65522 -13.48581 -13.42524 -13.09421 -12.87596 -12.65130 -12.61141 -12.39299 -11.93603 -11.79632 -11.77959 -11.45950 -11.43202 -11.02276 -10.95849 -10.84655 -10.73394 -10.28204 -9.88583 -9.77377 -9.55457 -9.37985 -9.24761 -9.12140 -8.72213 -8.58933 -8.13884 -7.99152 -6.30580 -4.37867 1.43038 1.65586 2.26457 2.86302 3.08657 3.16954 3.26650 3.31202 3.34551 3.65212 4.23596 4.27336 4.48058 4.64365 4.77277 4.79080 4.86607 5.04254 5.07003 5.15409 5.22841 5.28985 5.37688 5.40231 5.44080 5.48108 5.55132 5.60873 5.65045 5.80312 5.89185 5.92108 5.96988 6.05425 6.08290 6.15662 6.29948 6.44180 6.48567 6.53655 6.66148 6.95233 6.97597 7.06590 7.27186 7.36037 7.64310 7.89484 8.01650 8.31466 8.34564 8.58383 8.74796 9.31769 10.75932 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010007 B = 0.004525 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.448924 B = 6186.576847 C = 7453.015582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.072 3.928 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.233 3.767 10 N -0.586 5.586 11 C 0.164 3.836 12 C -0.143 4.143 13 C -0.057 4.057 14 C -0.187 4.187 15 C 0.091 3.909 16 N -0.491 5.491 17 C 0.137 3.863 18 C 0.533 3.467 19 O -0.570 6.570 20 C -0.124 4.124 21 H 0.128 0.872 22 C -0.108 4.108 23 C -0.032 4.032 24 C 0.213 3.787 25 N -0.495 5.495 26 C -0.037 4.037 27 C -0.057 4.057 28 N -0.450 5.450 29 C 0.123 3.877 30 H 0.266 0.734 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.166 0.834 44 H 0.171 0.829 45 H 0.090 0.910 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -8.595 -1.869 10.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.132 4.132 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.077 0.923 9 C 0.114 3.886 10 N -0.315 5.315 11 C 0.040 3.960 12 C -0.147 4.147 13 C -0.083 4.083 14 C -0.207 4.207 15 C -0.066 4.066 16 N -0.199 5.199 17 C -0.020 4.020 18 C 0.321 3.679 19 O -0.451 6.451 20 C -0.145 4.145 21 H 0.145 0.855 22 C -0.147 4.147 23 C -0.071 4.071 24 C -0.049 4.049 25 N -0.214 5.214 26 C -0.185 4.185 27 C -0.191 4.191 28 N -0.132 5.132 29 C 0.000 4.000 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.164 0.836 38 H 0.174 0.826 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.184 0.816 44 H 0.188 0.812 45 H 0.108 0.892 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.859 -8.127 -1.545 9.594 hybrid contribution 1.651 0.590 -0.259 1.772 sum 6.510 -7.537 -1.804 10.121 Atomic orbital electron populations 1.69895 1.05862 1.27410 1.49174 1.24852 0.94767 0.99107 0.94461 0.86562 0.80269 0.83627 0.77884 1.19822 1.20835 1.20580 1.21397 0.93395 0.90147 1.52593 0.92319 1.19601 0.87371 0.82553 0.99072 1.48256 1.44500 1.34729 1.04015 1.20167 0.93943 0.95984 0.85897 1.21206 0.95974 0.98710 0.98764 1.21575 0.91923 0.98686 0.96129 1.22035 0.99693 0.98579 1.00407 1.22659 0.94619 0.94242 0.95098 1.67696 0.99266 1.28774 1.24183 1.22710 0.97753 0.89966 0.91619 1.19921 0.81241 0.81455 0.85317 1.90585 1.32498 1.34147 1.87907 1.21599 0.95607 1.05103 0.92204 0.85452 1.21570 0.96118 0.98675 0.98301 1.20213 0.93343 1.02526 0.91035 1.23359 0.84197 1.04030 0.93348 1.70037 1.26216 1.19471 1.05704 1.22284 0.88048 1.08289 0.99878 1.22513 0.99200 1.10731 0.86654 1.45390 1.07337 1.50511 1.09962 1.21770 0.96391 1.02870 0.78940 0.92412 0.94013 0.94214 0.89581 0.89969 0.84764 0.85585 0.83595 0.82585 0.91147 0.89200 0.88656 0.88359 0.81627 0.81168 0.89211 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.79 13.29 55.43 0.74 -22.06 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.54 -12.64 8.66 -34.44 -0.30 -12.94 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.23 4.75 4.84 -5.19 -0.03 4.73 16 10 N -0.59 -10.34 2.45 -176.43 -0.43 -10.77 16 11 C 0.16 2.55 5.56 -5.19 -0.03 2.52 16 12 C -0.14 -2.36 5.48 -104.48 -0.57 -2.93 16 13 C -0.06 -0.88 9.74 -39.28 -0.38 -1.26 16 14 C -0.19 -2.65 10.11 -39.44 -0.40 -3.05 16 15 C 0.09 1.38 11.18 -17.54 -0.20 1.18 16 16 N -0.49 -8.77 10.36 -13.25 -0.14 -8.90 16 17 C 0.14 2.41 10.83 -17.55 -0.19 2.22 16 18 C 0.53 9.28 6.70 -10.99 -0.07 9.20 16 19 O -0.57 -10.49 14.87 5.56 0.08 -10.41 16 20 C -0.12 -1.98 1.70 -91.56 -0.16 -2.14 16 21 H 0.13 2.38 6.20 -51.92 -0.32 2.06 16 22 C -0.11 -1.49 4.96 -26.45 -0.13 -1.63 16 23 C -0.03 -0.45 6.33 -27.51 -0.17 -0.63 16 24 C 0.21 3.49 7.65 -155.24 -1.19 2.30 16 25 N -0.50 -8.60 11.24 -10.62 -0.12 -8.72 16 26 C -0.04 -0.55 11.87 -17.67 -0.21 -0.76 16 27 C -0.06 -0.80 11.64 -16.76 -0.20 -1.00 16 28 N -0.45 -6.95 3.13 -113.75 -0.36 -7.31 16 29 C 0.12 1.83 6.00 -3.92 -0.02 1.81 16 30 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.04 0.87 5.73 -51.93 -0.30 0.57 16 32 H 0.04 0.85 7.83 -51.93 -0.41 0.44 16 33 H 0.09 1.20 7.81 -51.93 -0.41 0.79 16 34 H 0.08 1.21 7.45 -51.93 -0.39 0.82 16 35 H 0.13 2.04 7.50 -52.48 -0.39 1.64 16 36 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.16 2.73 8.06 -52.48 -0.42 2.31 16 39 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 40 H 0.09 1.21 7.38 -51.93 -0.38 0.82 16 41 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 44 H 0.17 1.81 8.06 -52.48 -0.42 1.39 16 45 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.10 1.39 7.52 -51.92 -0.39 1.00 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -29.44 381.31 -10.18 -39.61 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.34 Total: 8.02 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -4.34 Total: -0.66 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.31 Total: -57.76 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.44 -10.18 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364396846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.203 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds