Wall clock time and date at job start Sat Apr 11 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99439 * 2 1 4 4 H 1.48507 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47448 * 300.00121 * 3 2 1 6 6 H 1.48505 * 109.47257 * 60.00547 * 3 2 1 7 7 C 1.37872 * 120.00555 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00571 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99649 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46698 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00196 * 95.27912 * 10 9 7 12 12 C 1.50704 * 109.47000 * 269.99706 * 11 10 9 13 13 C 1.38675 * 120.41642 * 269.72128 * 12 11 10 14 14 C 1.38624 * 118.42145 * 179.78068 * 13 12 11 15 15 C 1.38234 * 119.15916 * 0.51397 * 14 13 12 16 16 N 1.31852 * 120.76220 * 359.72437 * 15 14 13 17 17 C 1.31885 * 121.72622 * 0.02562 * 16 15 14 18 18 C 1.34778 * 119.99773 * 275.27253 * 10 9 7 19 19 O 1.21278 * 120.00082 * 174.75674 * 18 10 9 20 20 C 1.50696 * 120.00120 * 354.75861 * 18 10 9 21 21 H 1.09010 * 109.46620 * 34.52388 * 20 18 10 22 22 C 1.53150 * 109.47018 * 274.53819 * 20 18 10 23 23 C 1.53401 * 109.24064 * 170.50329 * 22 20 18 24 24 C 1.51038 * 108.21162 * 48.81927 * 23 22 20 25 25 N 1.30092 * 127.39267 * 164.06618 * 24 23 22 26 26 C 1.34293 * 109.21366 * 180.02562 * 25 24 23 27 27 C 1.34859 * 108.06835 * 359.96081 * 26 25 24 28 28 N 1.35426 * 123.98293 * 344.06148 * 24 23 22 29 29 C 1.46477 * 124.81961 * 359.85075 * 28 24 23 30 30 H 0.96998 * 120.00372 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47116 * 59.99937 * 9 7 2 32 32 H 1.09003 * 109.47052 * 299.99903 * 9 7 2 33 33 H 1.08997 * 109.47140 * 29.99385 * 11 10 9 34 34 H 1.08996 * 109.47261 * 149.99610 * 11 10 9 35 35 H 1.08003 * 120.78913 * 0.02562 * 13 12 11 36 36 H 1.08002 * 120.42058 * 180.21926 * 14 13 12 37 37 H 1.07995 * 119.62050 * 179.74860 * 15 14 13 38 38 H 1.08003 * 119.61879 * 180.02562 * 17 16 15 39 39 H 1.09003 * 109.50385 * 290.42934 * 22 20 18 40 40 H 1.08998 * 109.51311 * 50.52539 * 22 20 18 41 41 H 1.09004 * 109.71456 * 168.49527 * 23 22 20 42 42 H 1.08995 * 109.71411 * 289.13667 * 23 22 20 43 43 H 1.07998 * 125.96428 * 179.97438 * 26 25 24 44 44 H 1.08009 * 126.65170 * 179.97438 * 27 26 25 45 45 H 1.09000 * 109.57974 * 223.09722 * 29 28 24 46 46 H 1.09007 * 109.57970 * 102.68806 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 2.5896 -4.2457 1.2618 12 6 3.7973 -3.5434 1.8270 13 6 5.0753 -3.9710 1.4995 14 6 6.1567 -3.2920 2.0392 15 6 5.9268 -2.2257 2.8883 16 7 4.6974 -1.8499 3.1815 17 6 3.6453 -2.4692 2.6827 18 6 2.7236 -4.0545 -1.1636 19 8 3.5821 -4.9111 -1.1567 20 6 2.2387 -3.4842 -2.4715 21 1 1.9979 -2.4291 -2.3407 22 6 0.9870 -4.2409 -2.9255 23 6 0.3620 -3.5121 -4.1219 24 6 1.4548 -3.2278 -5.1249 25 7 1.3132 -2.8930 -6.3740 26 6 2.5256 -2.7288 -6.9278 27 6 3.4544 -2.9716 -5.9806 28 7 2.7775 -3.2874 -4.8404 29 6 3.3367 -3.6298 -3.5306 30 1 -0.4850 0.8400 0.0004 31 1 0.6248 -2.5563 -0.8920 32 1 0.6241 -2.5575 0.8880 33 1 1.7643 -4.1762 1.9704 34 1 2.8289 -5.2942 1.0845 35 1 5.2245 -4.8105 0.8367 36 1 7.1660 -3.5953 1.8031 37 1 6.7638 -1.6940 3.3162 38 1 2.6534 -2.1324 2.9455 39 1 1.2608 -5.2543 -3.2191 40 1 0.2686 -4.2806 -2.1068 41 1 -0.4013 -4.1424 -4.5785 42 1 -0.0848 -2.5752 -3.7893 43 1 2.7223 -2.4506 -7.9526 44 1 4.5266 -2.9257 -6.1023 45 1 4.1609 -2.9555 -3.2977 46 1 3.6966 -4.6587 -3.5447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364396846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:41 Heat of formation + Delta-G solvation = 43.151862 kcal Electronic energy + Delta-G solvation = -30287.198682 eV Core-core repulsion = 26369.876204 eV Total energy + Delta-G solvation = -3917.322477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.28385 -41.41757 -40.57095 -37.29845 -36.87399 -34.78182 -34.23692 -33.50211 -32.54233 -31.02517 -29.43593 -29.38354 -27.51568 -25.49761 -24.92826 -24.35679 -23.82024 -22.80093 -22.29859 -20.44245 -19.58564 -18.71779 -18.41008 -17.95151 -17.62510 -17.16247 -17.03557 -16.64802 -16.49606 -16.16812 -15.60240 -15.42349 -15.10172 -14.89795 -14.70363 -14.64443 -14.45178 -14.18188 -14.13965 -13.84635 -13.77824 -13.51242 -13.21406 -13.02651 -12.91592 -12.79963 -12.67950 -12.44361 -12.16629 -12.05746 -11.96299 -11.68082 -10.98743 -10.89853 -10.67585 -10.57729 -10.49813 -10.39360 -9.88111 -9.48988 -9.27115 -8.22717 -6.31522 0.20966 0.42373 1.11784 1.30592 1.37420 1.42628 1.58463 1.81744 2.17090 2.27264 2.40314 3.00281 3.10824 3.32880 3.44631 3.48779 3.61982 3.68236 3.91262 3.98435 4.04158 4.13202 4.17731 4.20344 4.26377 4.34176 4.37642 4.50188 4.56393 4.68535 4.68790 4.73891 4.78339 4.87725 4.92605 4.94172 4.96655 5.10434 5.24369 5.27266 5.38956 5.42622 5.64438 5.79682 5.85777 5.86644 6.06174 6.19446 6.49247 6.80892 7.10595 7.14739 7.22290 7.40142 8.82561 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010007 B = 0.004525 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.448924 B = 6186.576847 C = 7453.015582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.036 3.964 3 Si 0.929 3.071 4 H -0.283 1.283 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.523 4.523 8 H 0.040 0.960 9 C 0.249 3.751 10 N -0.587 5.587 11 C 0.161 3.839 12 C -0.150 4.150 13 C -0.064 4.064 14 C -0.177 4.177 15 C 0.082 3.918 16 N -0.519 5.519 17 C 0.117 3.883 18 C 0.534 3.466 19 O -0.576 6.576 20 C -0.119 4.119 21 H 0.098 0.902 22 C -0.099 4.099 23 C -0.028 4.028 24 C 0.193 3.807 25 N -0.525 5.525 26 C -0.054 4.054 27 C -0.054 4.054 28 N -0.456 5.456 29 C 0.130 3.870 30 H 0.266 0.734 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.161 0.839 37 H 0.177 0.823 38 H 0.145 0.855 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.191 0.809 44 H 0.204 0.796 45 H 0.089 0.911 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.024 -9.574 -2.384 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.165 4.165 3 Si 0.757 3.243 4 H -0.208 1.208 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.562 4.562 8 H 0.058 0.942 9 C 0.129 3.871 10 N -0.316 5.316 11 C 0.038 3.962 12 C -0.153 4.153 13 C -0.091 4.091 14 C -0.197 4.197 15 C -0.074 4.074 16 N -0.228 5.228 17 C -0.040 4.040 18 C 0.322 3.678 19 O -0.458 6.458 20 C -0.141 4.141 21 H 0.117 0.883 22 C -0.137 4.137 23 C -0.067 4.067 24 C -0.070 4.070 25 N -0.245 5.245 26 C -0.201 4.201 27 C -0.188 4.188 28 N -0.138 5.138 29 C 0.008 3.992 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.158 0.842 36 H 0.179 0.821 37 H 0.194 0.806 38 H 0.162 0.838 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.132 0.868 42 H 0.104 0.896 43 H 0.208 0.792 44 H 0.221 0.779 45 H 0.108 0.892 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.486 -9.112 -2.058 11.372 hybrid contribution 1.265 0.877 -0.106 1.543 sum 7.750 -8.235 -2.163 11.514 Atomic orbital electron populations 1.69938 1.06421 1.27663 1.50739 1.25282 0.95240 1.00906 0.95061 0.85957 0.78838 0.81889 0.77660 1.20797 1.20804 1.20626 1.21454 0.92461 0.91444 1.50793 0.94159 1.19234 0.87282 0.82203 0.98397 1.48165 1.44193 1.34131 1.05069 1.20331 0.94322 0.96259 0.85249 1.21246 0.96768 0.98565 0.98747 1.21754 0.91979 0.99029 0.96314 1.22403 1.01002 0.97411 0.98879 1.23220 0.94447 0.94676 0.95094 1.67658 1.00351 1.29685 1.25143 1.22631 0.97572 0.90954 0.92855 1.20096 0.80912 0.81232 0.85538 1.90577 1.32686 1.34510 1.88030 1.21501 0.97021 1.03430 0.92111 0.88339 1.21521 0.95140 0.98813 0.98250 1.20220 0.93342 1.02307 0.90793 1.23697 0.85014 1.04655 0.93608 1.70015 1.27735 1.20324 1.06425 1.22809 0.87515 1.08446 1.01299 1.23109 1.00695 1.09191 0.85765 1.45507 1.07324 1.50581 1.10367 1.21694 0.95761 1.03237 0.78524 0.92488 0.94206 0.95045 0.88370 0.88712 0.84236 0.82099 0.80615 0.83753 0.89953 0.88876 0.86780 0.89608 0.79202 0.77919 0.89244 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.14 13.29 21.45 0.28 -46.85 16 2 C 0.04 1.82 5.46 84.65 0.46 2.29 16 3 Si 0.93 42.27 29.54 68.60 2.03 44.29 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.52 -24.82 8.66 25.60 0.22 -24.60 16 8 H 0.04 2.05 7.81 -2.92 -0.02 2.03 16 9 C 0.25 10.20 4.84 85.64 0.41 10.62 16 10 N -0.59 -20.38 2.45 -830.49 -2.04 -22.42 16 11 C 0.16 4.89 5.56 85.64 0.48 5.37 16 12 C -0.15 -4.84 5.48 -19.77 -0.11 -4.94 16 13 C -0.06 -1.88 9.74 22.47 0.22 -1.66 16 14 C -0.18 -4.57 10.11 22.36 0.23 -4.34 16 15 C 0.08 2.34 11.18 84.69 0.95 3.29 16 16 N -0.52 -18.32 10.36 -195.84 -2.03 -20.35 16 17 C 0.12 4.13 10.83 84.67 0.92 5.04 16 18 C 0.53 18.03 6.70 87.66 0.59 18.61 16 19 O -0.58 -20.18 14.87 -3.02 -0.04 -20.23 16 20 C -0.12 -3.73 1.70 -11.41 -0.02 -3.75 16 21 H 0.10 3.71 6.20 -2.38 -0.01 3.70 16 22 C -0.10 -2.63 4.96 30.78 0.15 -2.48 16 23 C -0.03 -0.77 6.33 30.09 0.19 -0.58 16 24 C 0.19 6.16 7.65 138.23 1.06 7.22 16 25 N -0.53 -17.83 11.24 -187.51 -2.11 -19.94 16 26 C -0.05 -1.51 11.87 83.54 0.99 -0.52 16 27 C -0.05 -1.42 11.64 83.22 0.97 -0.45 16 28 N -0.46 -13.46 3.13 -513.81 -1.61 -15.07 16 29 C 0.13 3.71 6.00 86.47 0.52 4.23 16 30 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 31 H 0.04 1.67 5.73 -2.39 -0.01 1.66 16 32 H 0.03 1.35 7.83 -2.39 -0.02 1.34 16 33 H 0.10 2.69 7.81 -2.39 -0.02 2.67 16 34 H 0.09 2.64 7.45 -2.39 -0.02 2.62 16 35 H 0.14 3.93 7.50 -2.91 -0.02 3.90 16 36 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 38 H 0.15 5.25 8.06 -2.91 -0.02 5.23 16 39 H 0.08 2.01 8.12 -2.39 -0.02 1.99 16 40 H 0.09 2.41 7.38 -2.39 -0.02 2.40 16 41 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 42 H 0.09 2.56 8.14 -2.39 -0.02 2.55 16 43 H 0.19 4.11 8.06 -2.91 -0.02 4.09 16 44 H 0.20 3.69 8.06 -2.91 -0.02 3.67 16 45 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.10 2.80 7.52 -2.38 -0.02 2.78 16 Total: -1.00 -62.37 381.31 3.70 -58.67 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.99 Total: 28.54 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 8.22 Total: 13.35 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -7.50 Total: -124.63 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.04 Total: -20.23 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -62.37 3.70 -58.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364396846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.822 kcal (2) G-P(sol) polarization free energy of solvation -62.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds