Wall clock time and date at job start Sat Apr 11 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99958 * 2 1 4 4 H 1.48499 * 109.46759 * 269.99784 * 3 2 1 5 5 H 1.48500 * 109.47162 * 29.99627 * 3 2 1 6 6 H 1.48494 * 109.47282 * 149.99741 * 3 2 1 7 7 C 1.37877 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99799 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99951 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.46899 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99415 * 90.84407 * 10 9 7 12 12 C 1.50700 * 109.47193 * 90.00101 * 11 10 9 13 13 C 1.38675 * 120.41731 * 270.24333 * 12 11 10 14 14 C 1.38630 * 118.41778 * 180.23959 * 13 12 11 15 15 C 1.38219 * 119.16320 * 359.76168 * 14 13 12 16 16 N 1.31855 * 120.76390 * 359.97438 * 15 14 13 17 17 C 1.31876 * 121.72759 * 0.02562 * 16 15 14 18 18 C 1.34770 * 120.00183 * 270.83775 * 10 9 7 19 19 O 1.21280 * 120.00019 * 184.95205 * 18 10 9 20 20 C 1.50707 * 120.00033 * 4.95856 * 18 10 9 21 21 H 1.09002 * 109.67966 * 24.55641 * 20 18 10 22 22 C 1.53395 * 109.68417 * 145.07546 * 20 18 10 23 23 C 1.53112 * 109.45020 * 169.37652 * 22 20 18 24 24 C 1.53348 * 109.53653 * 289.99806 * 23 22 20 25 25 C 1.50867 * 108.41181 * 49.97736 * 24 23 22 26 26 N 1.33575 * 128.03225 * 163.25737 * 25 24 23 27 27 C 1.30909 * 109.13459 * 180.16957 * 26 25 24 28 28 N 1.35310 * 108.75288 * 359.91701 * 27 26 25 29 29 H 0.97001 * 126.49524 * 180.02562 * 28 27 26 30 30 C 1.35083 * 124.00440 * 343.33640 * 25 24 23 31 31 H 0.97000 * 120.00148 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47278 * 60.00126 * 9 7 2 33 33 H 1.08992 * 109.47124 * 299.99500 * 9 7 2 34 34 H 1.08998 * 109.47669 * 329.99333 * 11 10 9 35 35 H 1.09009 * 109.46832 * 209.99633 * 11 10 9 36 36 H 1.08002 * 120.78742 * 359.97438 * 13 12 11 37 37 H 1.08000 * 120.41820 * 179.73106 * 14 13 12 38 38 H 1.08001 * 119.62187 * 180.02562 * 15 14 13 39 39 H 1.08006 * 119.61952 * 179.97438 * 17 16 15 40 40 H 1.09003 * 109.47669 * 289.37393 * 22 20 18 41 41 H 1.09008 * 109.47623 * 49.37899 * 22 20 18 42 42 H 1.09000 * 109.45867 * 50.01687 * 23 22 20 43 43 H 1.08998 * 109.46496 * 169.97491 * 23 22 20 44 44 H 1.09000 * 109.68046 * 169.70793 * 24 23 22 45 45 H 1.09001 * 109.67684 * 290.24772 * 24 23 22 46 46 H 1.08005 * 125.62998 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6648 -4.1814 1.2692 12 6 1.7434 -5.2997 1.6833 13 6 0.6315 -5.0385 2.4698 14 6 -0.1852 -6.0989 2.8306 15 6 0.1308 -7.3715 2.3935 16 7 1.1936 -7.5821 1.6421 17 6 1.9927 -6.5976 1.2796 18 6 2.6540 -4.1138 -1.1665 19 8 3.3711 -5.0919 -1.1697 20 6 2.2673 -3.4586 -2.4674 21 1 2.0177 -2.4122 -2.2915 22 6 3.4335 -3.5518 -3.4595 23 6 2.9542 -3.1292 -4.8509 24 6 2.0040 -4.1943 -5.4114 25 6 0.9606 -4.4998 -4.3654 26 7 -0.2121 -5.1181 -4.5289 27 6 -0.8271 -5.1837 -3.3751 28 7 -0.0488 -4.6017 -2.4336 29 1 -0.2560 -4.5089 -1.4905 30 6 1.0798 -4.1707 -3.0607 31 1 -0.4850 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8897 33 1 0.6241 -2.5567 0.8903 34 1 2.6641 -3.4071 2.0363 35 1 3.6758 -4.5703 1.1464 36 1 0.4096 -4.0334 2.7970 37 1 -1.0571 -5.9329 3.4460 38 1 -0.5006 -8.2030 2.6699 39 1 2.8545 -6.8088 0.6637 40 1 4.2389 -2.8920 -3.1367 41 1 3.7978 -4.5785 -3.4969 42 1 2.4303 -2.1760 -4.7805 43 1 3.8127 -3.0232 -5.5142 44 1 1.5207 -3.8173 -6.3127 45 1 2.5644 -5.0993 -5.6460 46 1 -1.7955 -5.6298 -3.2028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373367510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:54 Heat of formation + Delta-G solvation = 44.229063 kcal Electronic energy + Delta-G solvation = -30614.311831 eV Core-core repulsion = 26697.036064 eV Total energy + Delta-G solvation = -3917.275766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03355 -40.18401 -39.12870 -36.20639 -35.33535 -33.35425 -32.76034 -32.19099 -31.44846 -29.75219 -28.62451 -27.72528 -26.24345 -23.91617 -23.49134 -22.94066 -22.05457 -21.89385 -21.15172 -18.88677 -18.54894 -17.43854 -17.04108 -16.89698 -16.44312 -15.93814 -15.65439 -15.19726 -14.99045 -14.55667 -14.43986 -14.23629 -13.88702 -13.71789 -13.32985 -13.23398 -12.97240 -12.92444 -12.81874 -12.56646 -12.09981 -12.00084 -11.81677 -11.47715 -11.44459 -11.05434 -11.00391 -10.90312 -10.66493 -10.51993 -10.32414 -10.01547 -9.79678 -9.70072 -9.53003 -9.36037 -9.24799 -8.86654 -8.72341 -8.01915 -7.78650 -6.37065 -4.46038 1.18726 1.39881 2.34941 3.07222 3.12091 3.20513 3.23034 3.38435 3.42594 3.64311 4.07274 4.19092 4.56659 4.69070 4.90257 4.96697 5.02151 5.03019 5.09446 5.12416 5.17661 5.19333 5.36902 5.46396 5.49849 5.64582 5.75184 5.79782 5.88807 5.95642 5.96445 6.02825 6.15136 6.20974 6.21929 6.30010 6.39285 6.42003 6.47952 6.57296 6.65735 6.83161 6.85128 7.05138 7.24433 7.56959 7.65885 7.82238 8.03499 8.08945 8.35253 8.58233 8.75488 9.23774 10.69446 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007093 B = 0.006152 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3946.420023 B = 4550.006907 C = 6937.978120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.236 3.764 10 N -0.594 5.594 11 C 0.160 3.840 12 C -0.148 4.148 13 C -0.061 4.061 14 C -0.179 4.179 15 C 0.089 3.911 16 N -0.491 5.491 17 C 0.118 3.882 18 C 0.522 3.478 19 O -0.558 6.558 20 C -0.035 4.035 21 H 0.127 0.873 22 C -0.097 4.097 23 C -0.117 4.117 24 C -0.030 4.030 25 C 0.001 3.999 26 N -0.487 5.487 27 C 0.170 3.830 28 N -0.552 5.552 29 H 0.419 0.581 30 C 0.008 3.992 31 H 0.267 0.733 32 H 0.033 0.967 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.159 0.841 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -7.009 0.201 7.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.117 3.883 10 N -0.324 5.324 11 C 0.036 3.964 12 C -0.151 4.151 13 C -0.087 4.087 14 C -0.199 4.199 15 C -0.068 4.068 16 N -0.199 5.199 17 C -0.039 4.039 18 C 0.309 3.691 19 O -0.437 6.437 20 C -0.057 4.057 21 H 0.145 0.855 22 C -0.136 4.136 23 C -0.155 4.155 24 C -0.068 4.068 25 C -0.129 4.129 26 N -0.207 5.207 27 C -0.112 4.112 28 N -0.153 5.153 29 H 0.257 0.743 30 C -0.109 4.109 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.275 -8.541 -0.844 8.587 hybrid contribution -0.093 2.327 1.817 2.954 sum 0.182 -6.214 0.972 6.292 Atomic orbital electron populations 1.69899 1.06074 1.27640 1.48922 1.24946 0.94856 0.99438 0.94333 0.86498 0.79850 0.82699 0.78536 1.20244 1.21032 1.19663 1.21441 0.93744 0.90146 1.52942 0.91727 1.19481 0.87550 0.82985 0.98307 1.48344 1.45651 1.34605 1.03777 1.20157 0.96074 0.93081 0.87049 1.21448 0.98032 0.96909 0.98737 1.21648 0.92724 0.99773 0.94605 1.22112 1.01243 0.94044 1.02495 1.22730 0.93988 0.96152 0.93912 1.67730 1.04553 1.35994 1.11623 1.22881 0.97697 0.87998 0.95318 1.20403 0.79850 0.83370 0.85439 1.90583 1.38864 1.26653 1.87584 1.20003 0.91948 1.01313 0.92427 0.85497 1.21439 0.95695 1.03192 0.93229 1.21609 0.98950 0.98909 0.96064 1.19897 0.93001 0.98737 0.95148 1.20410 0.95511 1.04189 0.92782 1.69980 1.06774 1.19470 1.24443 1.24910 0.99261 1.03273 0.83801 1.42989 1.15767 1.44578 1.11991 0.74257 1.20487 0.90384 1.06343 0.93736 0.92321 0.94870 0.94568 0.89032 0.89672 0.84527 0.85043 0.83258 0.82414 0.90834 0.90389 0.91259 0.90971 0.90770 0.90950 0.77951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.71 13.29 55.43 0.74 -21.97 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 19.25 29.54 -169.99 -5.02 14.23 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.54 -12.75 8.61 -34.44 -0.30 -13.05 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.24 4.93 4.75 -5.19 -0.02 4.90 16 10 N -0.59 -10.95 2.44 -176.43 -0.43 -11.38 16 11 C 0.16 2.62 5.52 -5.20 -0.03 2.59 16 12 C -0.15 -2.26 5.48 -104.48 -0.57 -2.84 16 13 C -0.06 -0.84 9.86 -39.28 -0.39 -1.23 16 14 C -0.18 -2.17 10.11 -39.44 -0.40 -2.57 16 15 C 0.09 1.15 11.18 -17.55 -0.20 0.96 16 16 N -0.49 -7.69 10.36 -13.25 -0.14 -7.83 16 17 C 0.12 1.90 10.76 -17.55 -0.19 1.71 16 18 C 0.52 9.91 6.60 -10.98 -0.07 9.84 16 19 O -0.56 -11.39 14.97 5.56 0.08 -11.30 16 20 C -0.03 -0.63 2.06 -92.74 -0.19 -0.82 16 21 H 0.13 2.53 5.97 -51.93 -0.31 2.22 16 22 C -0.10 -1.52 5.06 -26.47 -0.13 -1.65 16 23 C -0.12 -1.58 5.90 -26.49 -0.16 -1.74 16 24 C -0.03 -0.43 6.30 -27.62 -0.17 -0.60 16 25 C 0.00 0.02 6.98 -82.87 -0.58 -0.56 16 26 N -0.49 -8.69 11.25 -10.69 -0.12 -8.81 16 27 C 0.17 2.66 13.05 -89.79 -1.17 1.49 16 28 N -0.55 -9.20 5.85 -10.24 -0.06 -9.26 16 29 H 0.42 6.74 8.38 -40.82 -0.34 6.40 16 30 C 0.01 0.15 6.09 -81.84 -0.50 -0.35 16 31 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.03 0.73 5.66 -51.93 -0.29 0.44 16 33 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.09 1.44 8.03 -51.93 -0.42 1.03 16 35 H 0.08 1.38 7.45 -51.92 -0.39 0.99 16 36 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.16 2.66 7.41 -52.48 -0.39 2.27 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.28 7.47 -51.92 -0.39 0.89 16 42 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.20 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -29.13 380.26 -10.68 -39.81 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -6.29 Total: 13.12 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -5.17 Total: -2.34 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.01 Total: -59.25 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.13 -10.68 -39.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373367510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.044 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds