Wall clock time and date at job start Sat Apr 11 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99958 * 2 1 4 4 H 1.48499 * 109.46759 * 269.99784 * 3 2 1 5 5 H 1.48500 * 109.47162 * 29.99627 * 3 2 1 6 6 H 1.48494 * 109.47282 * 149.99741 * 3 2 1 7 7 C 1.37877 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99799 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99951 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.46899 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99415 * 90.84407 * 10 9 7 12 12 C 1.50700 * 109.47193 * 90.00101 * 11 10 9 13 13 C 1.38675 * 120.41731 * 270.24333 * 12 11 10 14 14 C 1.38630 * 118.41778 * 180.23959 * 13 12 11 15 15 C 1.38219 * 119.16320 * 359.76168 * 14 13 12 16 16 N 1.31855 * 120.76390 * 359.97438 * 15 14 13 17 17 C 1.31876 * 121.72759 * 0.02562 * 16 15 14 18 18 C 1.34770 * 120.00183 * 270.83775 * 10 9 7 19 19 O 1.21280 * 120.00019 * 184.95205 * 18 10 9 20 20 C 1.50707 * 120.00033 * 4.95856 * 18 10 9 21 21 H 1.09002 * 109.67966 * 24.55641 * 20 18 10 22 22 C 1.53395 * 109.68417 * 145.07546 * 20 18 10 23 23 C 1.53112 * 109.45020 * 169.37652 * 22 20 18 24 24 C 1.53348 * 109.53653 * 289.99806 * 23 22 20 25 25 C 1.50867 * 108.41181 * 49.97736 * 24 23 22 26 26 N 1.33575 * 128.03225 * 163.25737 * 25 24 23 27 27 C 1.30909 * 109.13459 * 180.16957 * 26 25 24 28 28 N 1.35310 * 108.75288 * 359.91701 * 27 26 25 29 29 H 0.97001 * 126.49524 * 180.02562 * 28 27 26 30 30 C 1.35083 * 124.00440 * 343.33640 * 25 24 23 31 31 H 0.97000 * 120.00148 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47278 * 60.00126 * 9 7 2 33 33 H 1.08992 * 109.47124 * 299.99500 * 9 7 2 34 34 H 1.08998 * 109.47669 * 329.99333 * 11 10 9 35 35 H 1.09009 * 109.46832 * 209.99633 * 11 10 9 36 36 H 1.08002 * 120.78742 * 359.97438 * 13 12 11 37 37 H 1.08000 * 120.41820 * 179.73106 * 14 13 12 38 38 H 1.08001 * 119.62187 * 180.02562 * 15 14 13 39 39 H 1.08006 * 119.61952 * 179.97438 * 17 16 15 40 40 H 1.09003 * 109.47669 * 289.37393 * 22 20 18 41 41 H 1.09008 * 109.47623 * 49.37899 * 22 20 18 42 42 H 1.09000 * 109.45867 * 50.01687 * 23 22 20 43 43 H 1.08998 * 109.46496 * 169.97491 * 23 22 20 44 44 H 1.09000 * 109.68046 * 169.70793 * 24 23 22 45 45 H 1.09001 * 109.67684 * 290.24772 * 24 23 22 46 46 H 1.08005 * 125.62998 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6648 -4.1814 1.2692 12 6 1.7434 -5.2997 1.6833 13 6 0.6315 -5.0385 2.4698 14 6 -0.1852 -6.0989 2.8306 15 6 0.1308 -7.3715 2.3935 16 7 1.1936 -7.5821 1.6421 17 6 1.9927 -6.5976 1.2796 18 6 2.6540 -4.1138 -1.1665 19 8 3.3711 -5.0919 -1.1697 20 6 2.2673 -3.4586 -2.4674 21 1 2.0177 -2.4122 -2.2915 22 6 3.4335 -3.5518 -3.4595 23 6 2.9542 -3.1292 -4.8509 24 6 2.0040 -4.1943 -5.4114 25 6 0.9606 -4.4998 -4.3654 26 7 -0.2121 -5.1181 -4.5289 27 6 -0.8271 -5.1837 -3.3751 28 7 -0.0488 -4.6017 -2.4336 29 1 -0.2560 -4.5089 -1.4905 30 6 1.0798 -4.1707 -3.0607 31 1 -0.4850 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8897 33 1 0.6241 -2.5567 0.8903 34 1 2.6641 -3.4071 2.0363 35 1 3.6758 -4.5703 1.1464 36 1 0.4096 -4.0334 2.7970 37 1 -1.0571 -5.9329 3.4460 38 1 -0.5006 -8.2030 2.6699 39 1 2.8545 -6.8088 0.6637 40 1 4.2389 -2.8920 -3.1367 41 1 3.7978 -4.5785 -3.4969 42 1 2.4303 -2.1760 -4.7805 43 1 3.8127 -3.0232 -5.5142 44 1 1.5207 -3.8173 -6.3127 45 1 2.5644 -5.0993 -5.6460 46 1 -1.7955 -5.6298 -3.2028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373367510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:53 Heat of formation + Delta-G solvation = 29.656527 kcal Electronic energy + Delta-G solvation = -30614.943743 eV Core-core repulsion = 26697.036064 eV Total energy + Delta-G solvation = -3917.907679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.33378 -41.41510 -40.51230 -37.48417 -36.85701 -34.90400 -34.23346 -33.46079 -32.64547 -31.02369 -29.88225 -29.38774 -27.61313 -25.35417 -24.78232 -24.36106 -23.23022 -23.15649 -22.41054 -20.32008 -19.82774 -18.83385 -18.68095 -18.16676 -17.86429 -17.19353 -17.07083 -16.50924 -16.44053 -16.05671 -15.67893 -15.53334 -15.12182 -14.92707 -14.59832 -14.53976 -14.30307 -14.25821 -14.11872 -14.00199 -13.60770 -13.38000 -13.17993 -13.00195 -12.82834 -12.62260 -12.50604 -12.16959 -12.12115 -11.82919 -11.78011 -11.72253 -11.21743 -10.87161 -10.82654 -10.67715 -10.58865 -10.47813 -10.00851 -9.58008 -9.11147 -8.23956 -6.37676 0.07840 0.28959 1.03295 1.40908 1.44645 1.51644 1.59415 2.07877 2.15333 2.24020 2.41331 2.90101 3.08223 3.47819 3.49340 3.62028 3.79027 3.85099 3.87340 3.92803 4.05480 4.06121 4.15011 4.28968 4.36652 4.47441 4.50221 4.59780 4.65142 4.70773 4.73016 4.78624 4.83772 4.99318 5.02344 5.07767 5.12955 5.18232 5.18964 5.30652 5.32031 5.44951 5.60098 5.73278 5.75114 5.77558 6.00298 6.39302 6.45172 6.75432 6.97662 7.05437 7.19982 7.36170 8.81153 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007093 B = 0.006152 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3946.420023 B = 4550.006907 C = 6937.978120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.256 3.744 10 N -0.591 5.591 11 C 0.160 3.840 12 C -0.155 4.155 13 C -0.067 4.067 14 C -0.165 4.165 15 C 0.089 3.911 16 N -0.513 5.513 17 C 0.104 3.896 18 C 0.521 3.479 19 O -0.575 6.575 20 C -0.030 4.030 21 H 0.103 0.897 22 C -0.095 4.095 23 C -0.108 4.108 24 C -0.030 4.030 25 C -0.008 4.008 26 N -0.514 5.514 27 C 0.180 3.820 28 N -0.556 5.556 29 H 0.420 0.580 30 C -0.020 4.020 31 H 0.267 0.733 32 H 0.023 0.977 33 H 0.029 0.971 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.142 0.858 37 H 0.168 0.832 38 H 0.184 0.816 39 H 0.140 0.860 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 -7.250 0.388 7.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.173 4.173 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.075 0.925 9 C 0.135 3.865 10 N -0.320 5.320 11 C 0.037 3.963 12 C -0.158 4.158 13 C -0.094 4.094 14 C -0.184 4.184 15 C -0.068 4.068 16 N -0.222 5.222 17 C -0.052 4.052 18 C 0.309 3.691 19 O -0.455 6.455 20 C -0.052 4.052 21 H 0.121 0.879 22 C -0.133 4.133 23 C -0.146 4.146 24 C -0.069 4.069 25 C -0.138 4.138 26 N -0.234 5.234 27 C -0.103 4.103 28 N -0.157 5.157 29 H 0.258 0.742 30 C -0.137 4.137 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.160 0.840 37 H 0.185 0.815 38 H 0.201 0.799 39 H 0.157 0.843 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.122 0.878 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -0.465 -8.782 -0.651 8.818 hybrid contribution 0.067 2.310 1.818 2.941 sum -0.397 -6.472 1.167 6.588 Atomic orbital electron populations 1.69979 1.07105 1.28139 1.50166 1.25549 0.95445 1.02015 0.94274 0.85675 0.78815 0.79584 0.78396 1.20104 1.21011 1.19371 1.21643 0.93506 0.91298 1.52049 0.92469 1.19102 0.87353 0.82785 0.97253 1.48277 1.45150 1.34018 1.04595 1.20215 0.96310 0.93605 0.86196 1.21250 0.98696 0.96053 0.99841 1.21810 0.92474 1.00745 0.94354 1.22469 1.01466 0.92984 1.01524 1.23343 0.93191 0.97705 0.92573 1.67715 1.05626 1.36079 1.12741 1.22631 0.97904 0.88569 0.96118 1.20630 0.79455 0.83125 0.85892 1.90571 1.39704 1.27415 1.87839 1.19926 0.93130 0.99637 0.92533 0.87894 1.21462 0.94962 1.02824 0.94093 1.21583 0.99822 0.98061 0.95155 1.20030 0.92576 0.99432 0.94815 1.20979 0.96013 1.03471 0.93361 1.70023 1.07272 1.20617 1.25467 1.25777 0.99971 1.01535 0.82990 1.43062 1.15749 1.44744 1.12178 0.74228 1.20586 0.90984 1.07852 0.94280 0.92410 0.95900 0.95338 0.88661 0.90061 0.84037 0.81475 0.79860 0.84267 0.90372 0.91241 0.91951 0.87760 0.89547 0.90052 0.74048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.98 13.29 21.45 0.28 -46.69 16 2 C 0.03 1.38 5.46 84.65 0.46 1.84 16 3 Si 0.95 39.31 29.54 68.60 2.03 41.34 16 4 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.55 -25.86 8.61 25.60 0.22 -25.64 16 8 H 0.06 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.26 10.85 4.75 85.63 0.41 11.26 16 10 N -0.59 -22.33 2.44 -830.50 -2.03 -24.35 16 11 C 0.16 5.35 5.52 85.63 0.47 5.82 16 12 C -0.16 -4.77 5.48 -19.77 -0.11 -4.88 16 13 C -0.07 -1.78 9.86 22.47 0.22 -1.56 16 14 C -0.17 -3.54 10.11 22.36 0.23 -3.32 16 15 C 0.09 2.08 11.18 84.68 0.95 3.02 16 16 N -0.51 -15.69 10.36 -195.85 -2.03 -17.72 16 17 C 0.10 3.41 10.76 84.67 0.91 4.32 16 18 C 0.52 20.32 6.60 87.66 0.58 20.90 16 19 O -0.57 -24.17 14.97 -3.03 -0.05 -24.22 16 20 C -0.03 -1.10 2.06 -12.17 -0.03 -1.13 16 21 H 0.10 4.25 5.97 -2.39 -0.01 4.24 16 22 C -0.10 -2.97 5.06 30.76 0.16 -2.81 16 23 C -0.11 -2.79 5.90 30.75 0.18 -2.61 16 24 C -0.03 -0.84 6.30 30.02 0.19 -0.65 16 25 C -0.01 -0.29 6.98 41.62 0.29 0.00 16 26 N -0.51 -17.89 11.25 -187.75 -2.11 -20.00 16 27 C 0.18 5.41 13.05 180.06 2.35 7.76 16 28 N -0.56 -18.50 5.85 -186.31 -1.09 -19.59 16 29 H 0.42 13.59 8.38 -92.71 -0.78 12.81 16 30 C -0.02 -0.72 6.09 41.15 0.25 -0.46 16 31 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 32 H 0.02 1.04 5.66 -2.39 -0.01 1.02 16 33 H 0.03 1.26 8.07 -2.39 -0.02 1.24 16 34 H 0.10 3.05 8.03 -2.39 -0.02 3.03 16 35 H 0.08 2.75 7.45 -2.38 -0.02 2.73 16 36 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 37 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 38 H 0.18 2.93 8.06 -2.91 -0.02 2.90 16 39 H 0.14 4.96 7.41 -2.91 -0.02 4.94 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.07 2.28 7.47 -2.38 -0.02 2.27 16 42 H 0.06 1.70 8.11 -2.39 -0.02 1.68 16 43 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.24 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -62.85 380.26 2.97 -59.87 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: 0.24 Total: 39.51 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 7.73 Total: 11.86 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -6.97 Total: -128.37 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.22 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -62.85 2.97 -59.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373367510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.531 kcal (2) G-P(sol) polarization free energy of solvation -62.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds