Wall clock time and date at job start Sat Apr 11 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86809 * 119.99667 * 2 1 4 4 H 1.48500 * 109.47185 * 269.99746 * 3 2 1 5 5 H 1.48492 * 109.47300 * 29.99739 * 3 2 1 6 6 H 1.48501 * 109.47091 * 149.99938 * 3 2 1 7 7 C 1.37869 * 120.00597 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99746 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00462 * 180.02562 * 7 2 1 10 10 N 1.46508 * 109.47178 * 180.02562 * 9 7 2 11 11 C 1.34968 * 125.97563 * 125.00140 * 10 9 7 12 12 C 1.35230 * 107.86155 * 179.97438 * 11 10 9 13 13 C 1.40412 * 107.87053 * 359.97438 * 12 11 10 14 14 N 1.40150 * 125.97579 * 179.97438 * 13 12 11 15 15 C 1.34781 * 120.00104 * 0.02562 * 14 13 12 16 16 O 1.21292 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99943 * 179.97438 * 15 14 13 18 18 H 1.08997 * 110.72352 * 56.90052 * 17 15 14 19 19 C 1.54933 * 110.66773 * 293.80477 * 17 15 14 20 20 C 1.54586 * 102.92375 * 204.15438 * 19 17 15 21 21 C 1.53995 * 105.14219 * 21.95476 * 20 19 17 22 22 N 1.47900 * 107.05359 * 1.22505 * 21 20 19 23 23 C 1.39676 * 111.00227 * 214.15527 * 22 21 20 24 24 C 1.38906 * 120.07135 * 59.87350 * 23 22 21 25 25 C 1.38111 * 119.92343 * 180.02562 * 24 23 22 26 26 C 1.38288 * 120.07382 * 0.28047 * 25 24 23 27 27 C 1.38286 * 120.14755 * 359.44532 * 26 25 24 28 28 C 1.38112 * 120.07587 * 0.55318 * 27 26 25 29 29 N 1.31223 * 108.05024 * 0.26360 * 13 12 11 30 30 H 0.97001 * 120.00067 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.47423 * 60.00275 * 9 7 2 32 32 H 1.09003 * 109.47127 * 299.99943 * 9 7 2 33 33 H 1.08003 * 126.06744 * 359.97438 * 11 10 9 34 34 H 1.08005 * 126.06607 * 180.02562 * 12 11 10 35 35 H 0.97000 * 119.99992 * 180.02562 * 14 13 12 36 36 H 1.09000 * 110.72576 * 85.78655 * 19 17 15 37 37 H 1.09007 * 110.87790 * 322.58584 * 19 17 15 38 38 H 1.09002 * 110.31047 * 263.03721 * 20 19 17 39 39 H 1.09003 * 110.31411 * 140.87434 * 20 19 17 40 40 H 1.09002 * 109.91576 * 241.87699 * 21 20 19 41 41 H 1.08993 * 110.08159 * 120.67115 * 21 20 19 42 42 H 1.07999 * 120.03932 * 0.04675 * 24 23 22 43 43 H 1.08002 * 119.96028 * 179.97438 * 25 24 23 44 44 H 1.08001 * 119.92357 * 179.69823 * 26 25 24 45 45 H 1.08002 * 119.96005 * 180.25011 * 27 26 25 46 46 H 1.07998 * 120.03682 * 179.74419 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0010 11 6 4.8553 -3.1136 -0.8935 12 6 5.0567 -4.4057 -0.5490 13 6 4.2957 -4.6685 0.6014 14 7 4.2248 -5.8929 1.2796 15 6 4.9299 -6.9518 0.8344 16 8 5.6255 -6.8451 -0.1535 17 6 4.8541 -8.2682 1.5640 18 1 3.8226 -8.6143 1.6291 19 6 5.4805 -8.1477 2.9760 20 6 5.8860 -9.6039 3.2997 21 6 6.0014 -10.3028 1.9323 22 7 5.7076 -9.2859 0.8993 23 6 5.0482 -9.8567 -0.1917 24 6 3.8227 -10.4858 -0.0131 25 6 3.1736 -11.0497 -1.0939 26 6 3.7452 -10.9935 -2.3519 27 6 4.9624 -10.3631 -2.5342 28 6 5.6168 -9.7971 -1.4577 29 7 3.6577 -3.5690 0.9268 30 1 -0.4850 0.8401 -0.0004 31 1 3.8746 -0.6799 0.8911 32 1 3.8753 -0.6802 -0.8889 33 1 5.3000 -2.6031 -1.7350 34 1 5.6911 -5.1102 -1.0663 35 1 3.6682 -5.9783 2.0694 36 1 4.7460 -7.7831 3.6940 37 1 6.3559 -7.4983 2.9585 38 1 5.1186 -10.0844 3.9066 39 1 6.8454 -9.6235 3.8167 40 1 5.2786 -11.1162 1.8689 41 1 7.0104 -10.6913 1.7945 42 1 3.3778 -10.5337 0.9698 43 1 2.2210 -11.5393 -0.9556 44 1 3.2378 -11.4395 -3.1946 45 1 5.4041 -10.3175 -3.5187 46 1 6.5694 -9.3085 -1.6001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377465966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:00 Heat of formation + Delta-G solvation = 99.539803 kcal Electronic energy + Delta-G solvation = -28751.814795 eV Core-core repulsion = 24836.937482 eV Total energy + Delta-G solvation = -3914.877313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.07314 -40.40973 -38.93523 -37.63220 -34.73915 -33.33109 -32.83959 -31.38009 -31.06084 -29.82736 -29.31540 -28.58705 -27.08040 -24.11782 -22.94651 -22.51649 -22.08292 -21.34814 -20.79849 -19.94058 -19.43447 -17.81970 -17.29503 -17.04375 -16.52508 -16.10962 -15.56064 -15.17395 -15.10331 -14.99903 -14.54348 -14.38529 -14.28933 -13.69846 -13.56241 -13.48888 -13.14778 -13.05128 -12.66177 -12.51855 -12.42564 -12.30891 -12.17594 -11.89219 -11.70345 -11.52953 -11.36837 -11.14305 -11.01039 -10.75713 -10.61396 -10.00917 -9.98320 -9.56731 -9.50018 -9.06566 -8.84375 -8.78032 -8.76284 -8.16688 -7.50091 -6.23294 -4.25553 1.09926 1.28564 2.34449 2.62469 2.88350 3.15644 3.22760 3.23877 3.50039 3.57956 3.68792 3.89368 4.21582 4.23115 4.34977 4.55136 4.71315 4.76714 4.80252 4.82492 4.97122 5.04587 5.07498 5.24753 5.28114 5.42147 5.44506 5.47356 5.49815 5.56154 5.65071 5.71965 5.77473 5.91443 6.20267 6.22640 6.28021 6.33296 6.38948 6.41609 6.46194 6.61186 6.66118 6.68106 7.18747 7.25703 7.38439 7.61318 7.83086 8.31177 8.34241 8.58548 8.86630 9.31746 10.89434 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016061 B = 0.002455 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.917624 B =11403.100906 C =12074.197637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.320 5.320 11 C 0.050 3.950 12 C -0.283 4.283 13 C 0.263 3.737 14 N -0.632 5.632 15 C 0.529 3.471 16 O -0.492 6.492 17 C 0.054 3.946 18 H 0.086 0.914 19 C -0.115 4.115 20 C -0.129 4.129 21 C 0.040 3.960 22 N -0.458 5.458 23 C 0.081 3.919 24 C -0.154 4.154 25 C -0.115 4.115 26 C -0.122 4.122 27 C -0.117 4.117 28 C -0.073 4.073 29 N -0.298 5.298 30 H 0.268 0.732 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.168 0.832 34 H 0.161 0.839 35 H 0.409 0.591 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.749 -23.173 2.881 26.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.572 4.572 8 H 0.103 0.897 9 C 0.113 3.887 10 N -0.101 5.101 11 C -0.099 4.099 12 C -0.314 4.314 13 C 0.009 3.991 14 N -0.281 5.281 15 C 0.313 3.687 16 O -0.363 6.363 17 C -0.057 4.057 18 H 0.103 0.897 19 C -0.154 4.154 20 C -0.167 4.167 21 C -0.086 4.086 22 N -0.180 5.180 23 C -0.013 4.013 24 C -0.174 4.174 25 C -0.133 4.133 26 C -0.140 4.140 27 C -0.135 4.135 28 C -0.092 4.092 29 N -0.129 5.129 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.185 0.815 34 H 0.179 0.821 35 H 0.244 0.756 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.143 0.857 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.747 -22.094 2.783 25.177 hybrid contribution -0.397 0.265 0.043 0.479 sum 11.350 -21.829 2.826 24.766 Atomic orbital electron populations 1.69874 1.06161 1.27287 1.49217 1.24832 0.94867 0.98793 0.94265 0.86907 0.80446 0.83831 0.78929 1.19705 1.20539 1.18847 1.21110 0.87809 0.95701 1.52598 0.89661 1.20038 0.97433 0.73043 0.98160 1.48604 1.32426 1.10198 1.18916 1.22549 0.96016 0.94689 0.96646 1.21543 1.11513 0.96764 1.01559 1.19096 0.98734 0.86617 0.94615 1.42434 1.47611 1.07501 1.30534 1.20086 0.79554 0.84122 0.84923 1.90629 1.38004 1.82958 1.24671 1.22763 0.97634 0.91143 0.94114 0.89654 1.22513 1.01805 0.97918 0.93127 1.22409 1.02705 0.94934 0.96630 1.23006 1.02442 0.93357 0.89792 1.62003 1.39971 1.10555 1.05449 1.18907 0.92577 0.97344 0.92446 1.21603 0.96231 1.00290 0.99296 1.20979 0.99692 0.99914 0.92749 1.21188 0.95948 0.99723 0.97166 1.21164 0.95466 0.98047 0.98854 1.21057 1.00361 0.97049 0.90716 1.77390 1.23578 0.95666 1.16230 0.92187 0.94047 0.93368 0.81450 0.82131 0.75578 0.89631 0.89619 0.90840 0.90190 0.92847 0.89509 0.86433 0.86173 0.86107 0.85738 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 20.17 27.47 -169.99 -4.67 15.50 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 7 C -0.53 -15.15 9.79 -34.45 -0.34 -15.49 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 9 C 0.23 5.54 5.33 -5.19 -0.03 5.51 16 10 N -0.32 -7.31 3.67 -62.56 -0.23 -7.54 16 11 C 0.05 0.98 11.43 -17.24 -0.20 0.79 16 12 C -0.28 -5.58 9.60 -39.83 -0.38 -5.96 16 13 C 0.26 5.28 8.11 -154.39 -1.25 4.03 16 14 N -0.63 -9.85 5.45 -11.13 -0.06 -9.91 16 15 C 0.53 7.78 7.03 -10.98 -0.08 7.70 16 16 O -0.49 -8.71 13.36 5.55 0.07 -8.64 16 17 C 0.05 0.57 2.59 -66.94 -0.17 0.40 16 18 H 0.09 0.81 6.65 -51.93 -0.35 0.46 16 19 C -0.12 -0.92 6.48 -24.88 -0.16 -1.08 16 20 C -0.13 -0.81 6.93 -25.38 -0.18 -0.98 16 21 C 0.04 0.32 6.51 -2.75 -0.02 0.30 16 22 N -0.46 -5.01 4.59 -161.07 -0.74 -5.75 16 23 C 0.08 0.94 4.40 -83.79 -0.37 0.57 16 24 C -0.15 -1.57 7.90 -39.38 -0.31 -1.88 16 25 C -0.11 -1.10 10.04 -39.61 -0.40 -1.50 16 26 C -0.12 -1.17 10.04 -39.55 -0.40 -1.57 16 27 C -0.12 -1.21 10.04 -39.61 -0.40 -1.61 16 28 C -0.07 -0.87 9.97 -39.38 -0.39 -1.26 16 29 N -0.30 -6.86 12.42 31.44 0.39 -6.47 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 32 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 33 H 0.17 2.60 8.06 -52.48 -0.42 2.18 16 34 H 0.16 3.10 5.92 -52.48 -0.31 2.79 16 35 H 0.41 5.21 8.82 -40.82 -0.36 4.85 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.78 8.05 -51.93 -0.42 0.37 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.39 6.69 -51.93 -0.35 0.04 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.12 1.00 7.05 -52.49 -0.37 0.63 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 45 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 46 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -34.85 380.42 -10.20 -45.06 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.31 Total: 7.92 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -5.16 Total: -9.99 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.14 Total: -55.58 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.07 Total: -8.64 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.85 -10.20 -45.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377465966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.595 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds