Wall clock time and date at job start Sat Apr 11 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00048 * 2 1 4 4 H 1.48497 * 109.47053 * 240.00007 * 3 2 1 5 5 H 1.48500 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47261 * 119.99703 * 3 2 1 7 7 C 1.37874 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99703 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00272 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47360 * 179.97438 * 9 7 2 11 11 C 1.34970 * 125.97735 * 125.01392 * 10 9 7 12 12 C 1.35235 * 107.86395 * 179.69370 * 11 10 9 13 13 C 1.40416 * 107.86519 * 0.43070 * 12 11 10 14 14 N 1.40152 * 125.97147 * 179.82499 * 13 12 11 15 15 C 1.34782 * 120.00022 * 359.71733 * 14 13 12 16 16 O 1.21281 * 120.00130 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99928 * 179.97438 * 15 14 13 18 18 H 1.09007 * 110.42041 * 302.31471 * 17 15 14 19 19 C 1.54910 * 110.37422 * 64.62645 * 17 15 14 20 20 C 1.55140 * 101.65219 * 155.89744 * 19 17 15 21 21 C 1.54316 * 103.02151 * 324.35340 * 20 19 17 22 22 N 1.47442 * 107.23669 * 22.27940 * 21 20 19 23 23 C 1.39675 * 111.00257 * 123.25912 * 22 21 20 24 24 C 1.38915 * 120.07122 * 36.70162 * 23 22 21 25 25 C 1.38100 * 119.92462 * 180.02562 * 24 23 22 26 26 C 1.38296 * 120.07254 * 0.02562 * 25 24 23 27 27 C 1.38285 * 120.15078 * 0.27351 * 26 25 24 28 28 C 1.38102 * 120.07108 * 359.44690 * 27 26 25 29 29 N 1.31215 * 108.05012 * 359.56679 * 13 12 11 30 30 H 0.97001 * 119.99774 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.46966 * 59.99435 * 9 7 2 32 32 H 1.08995 * 109.47140 * 299.99809 * 9 7 2 33 33 H 1.08001 * 126.06598 * 359.97438 * 11 10 9 34 34 H 1.08001 * 126.06893 * 180.25861 * 12 11 10 35 35 H 0.97001 * 120.00057 * 179.71846 * 14 13 12 36 36 H 1.08997 * 110.98455 * 37.81037 * 19 17 15 37 37 H 1.09004 * 111.02490 * 274.00532 * 19 17 15 38 38 H 1.08997 * 110.70855 * 205.96538 * 20 19 17 39 39 H 1.09004 * 110.70399 * 82.72785 * 20 19 17 40 40 H 1.09007 * 109.88625 * 262.87583 * 21 20 19 41 41 H 1.08999 * 110.02836 * 141.76181 * 21 20 19 42 42 H 1.08000 * 120.03856 * 0.02562 * 24 23 22 43 43 H 1.07995 * 119.96379 * 179.97438 * 25 24 23 44 44 H 1.08001 * 119.92099 * 180.02562 * 26 25 24 45 45 H 1.07999 * 119.96403 * 179.70216 * 27 26 25 46 46 H 1.08004 * 120.03839 * 180.27480 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2419 -4.6226 0.8951 12 6 3.2562 -5.4465 0.5468 13 6 3.8681 -4.9153 -0.5999 14 7 4.9636 -5.4664 -1.2786 15 6 5.5275 -6.6070 -0.8340 16 8 5.0867 -7.1567 0.1531 17 6 6.7050 -7.1998 -1.5641 18 1 6.4466 -7.3989 -2.6042 19 6 7.9243 -6.2477 -1.4840 20 6 9.1052 -7.2328 -1.6884 21 6 8.6228 -8.5084 -0.9661 22 7 7.1515 -8.4419 -0.8979 23 6 6.5715 -9.5650 -1.4923 24 6 7.1731 -10.8103 -1.3619 25 6 6.5973 -11.9186 -1.9513 26 6 5.4236 -11.7896 -2.6712 27 6 4.8255 -10.5503 -2.8082 28 6 5.3929 -9.4389 -2.2165 29 7 3.2316 -3.8159 -0.9283 30 1 -0.4850 0.8401 0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 1.5777 -4.7524 1.7368 34 1 3.5460 -6.3508 1.0612 35 1 5.3159 -5.0270 -2.0683 36 1 7.9810 -5.7674 -0.5072 37 1 7.8932 -5.5046 -2.2810 38 1 10.0132 -6.8475 -1.2248 39 1 9.2653 -7.4278 -2.7488 40 1 9.0394 -8.5445 0.0406 41 1 8.9285 -9.3924 -1.5256 42 1 8.0899 -10.9117 -0.8001 43 1 7.0646 -12.8870 -1.8506 44 1 4.9753 -12.6580 -3.1308 45 1 3.9116 -10.4522 -3.3751 46 1 4.9229 -8.4720 -2.3201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377465967.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:03 Heat of formation + Delta-G solvation = 95.488596 kcal Electronic energy + Delta-G solvation = -28684.117900 eV Core-core repulsion = 24769.064913 eV Total energy + Delta-G solvation = -3915.052986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28292 -40.42068 -38.94200 -37.66315 -34.74349 -33.40847 -32.90606 -31.68709 -30.97947 -29.63050 -29.26232 -28.58439 -26.66620 -24.23895 -23.26379 -22.97988 -22.09365 -20.98368 -20.75421 -19.98363 -19.42517 -18.11624 -17.37912 -16.65343 -16.56817 -15.94285 -15.56503 -15.36628 -15.28220 -14.87726 -14.67127 -14.22950 -14.09636 -13.93642 -13.54566 -13.51558 -13.36115 -13.13655 -12.76889 -12.35058 -12.30197 -12.24590 -11.96110 -11.78052 -11.75829 -11.50825 -11.26150 -11.06754 -11.05271 -10.86416 -10.42947 -10.26160 -10.19819 -9.94496 -9.52042 -9.44613 -9.10272 -8.63514 -8.12817 -8.01267 -7.46699 -6.24732 -4.29918 1.22140 1.22488 2.31812 2.58919 2.92673 3.24874 3.28211 3.32108 3.38313 3.69467 3.70359 3.88035 4.11063 4.15315 4.31806 4.50149 4.65603 4.68527 4.73992 4.78770 4.96591 4.99485 5.10311 5.18203 5.25750 5.28206 5.35877 5.41366 5.50531 5.54020 5.56214 5.72935 5.77456 5.81198 5.95571 6.22393 6.27065 6.39489 6.49120 6.51615 6.59565 6.69246 6.86255 7.03835 7.05054 7.40407 7.58464 7.70608 7.88798 8.04520 8.28057 8.63189 8.79403 9.35590 10.83968 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.002337 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.878548 B =11979.948364 C =12911.405174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.319 5.319 11 C 0.051 3.949 12 C -0.287 4.287 13 C 0.258 3.742 14 N -0.632 5.632 15 C 0.523 3.477 16 O -0.488 6.488 17 C 0.055 3.945 18 H 0.098 0.902 19 C -0.123 4.123 20 C -0.139 4.139 21 C 0.039 3.961 22 N -0.453 5.453 23 C 0.121 3.879 24 C -0.158 4.158 25 C -0.093 4.093 26 C -0.154 4.154 27 C -0.088 4.088 28 C -0.160 4.160 29 N -0.304 5.304 30 H 0.268 0.732 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.168 0.832 34 H 0.159 0.841 35 H 0.409 0.591 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.001 -20.500 -6.124 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.141 3.859 10 N -0.101 5.101 11 C -0.099 4.099 12 C -0.318 4.318 13 C 0.005 3.995 14 N -0.281 5.281 15 C 0.306 3.694 16 O -0.359 6.359 17 C -0.056 4.056 18 H 0.115 0.885 19 C -0.161 4.161 20 C -0.177 4.177 21 C -0.086 4.086 22 N -0.166 5.166 23 C 0.022 3.978 24 C -0.179 4.179 25 C -0.111 4.111 26 C -0.173 4.173 27 C -0.106 4.106 28 C -0.181 4.181 29 N -0.136 5.136 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.185 0.815 34 H 0.177 0.823 35 H 0.244 0.756 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 16.258 -19.649 -5.648 26.121 hybrid contribution 0.570 0.559 -0.383 0.886 sum 16.828 -19.089 -6.031 26.153 Atomic orbital electron populations 1.69910 1.06035 1.27736 1.49670 1.24947 0.94991 0.99538 0.94609 0.86382 0.79380 0.81796 0.78909 1.19948 1.21037 1.20040 1.21211 0.93937 0.89386 1.52174 0.91378 1.19739 0.85607 0.81272 0.99266 1.49078 1.23232 1.19716 1.18056 1.22562 1.00362 0.90164 0.96772 1.21526 1.02187 1.06243 1.01874 1.19073 0.91367 0.94290 0.94734 1.42422 1.30082 1.25036 1.30523 1.20159 0.83844 0.80014 0.85371 1.90671 1.61101 1.59472 1.24615 1.22677 0.94846 0.90714 0.97319 0.88457 1.22783 0.91868 0.97134 1.04364 1.22798 0.98792 0.94866 1.01259 1.23154 0.84686 0.98678 1.02112 1.59921 1.07040 0.99963 1.49672 1.19075 0.95128 0.91045 0.92597 1.20806 1.01575 0.91506 1.04011 1.20965 0.95537 0.97951 0.96673 1.21040 0.96958 0.97419 1.01897 1.21005 0.99053 0.92340 0.98250 1.21001 0.96986 0.99637 1.00488 1.77322 1.03657 1.16328 1.16253 0.92263 0.93731 0.92539 0.81509 0.82342 0.75632 0.89371 0.89032 0.89583 0.90609 0.89372 0.90660 0.85728 0.86056 0.86281 0.85982 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.32 13.29 55.43 0.74 -24.58 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.69 9.24 -34.44 -0.32 -15.01 16 8 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 9 C 0.26 6.58 6.26 -5.20 -0.03 6.55 16 10 N -0.32 -7.44 3.67 -62.56 -0.23 -7.67 16 11 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 12 C -0.29 -5.78 9.61 -39.83 -0.38 -6.16 16 13 C 0.26 5.17 8.11 -154.39 -1.25 3.92 16 14 N -0.63 -9.60 5.43 -11.13 -0.06 -9.66 16 15 C 0.52 7.58 5.96 -10.98 -0.07 7.51 16 16 O -0.49 -8.92 13.62 5.56 0.08 -8.84 16 17 C 0.06 0.57 2.16 -67.34 -0.15 0.43 16 18 H 0.10 0.87 6.47 -51.93 -0.34 0.53 16 19 C -0.12 -0.97 6.47 -24.59 -0.16 -1.13 16 20 C -0.14 -0.84 6.94 -24.91 -0.17 -1.01 16 21 C 0.04 0.30 6.18 -2.84 -0.02 0.28 16 22 N -0.45 -5.02 4.45 -161.77 -0.72 -5.74 16 23 C 0.12 1.37 5.78 -83.79 -0.48 0.89 16 24 C -0.16 -1.54 8.59 -39.38 -0.34 -1.87 16 25 C -0.09 -0.82 10.04 -39.61 -0.40 -1.21 16 26 C -0.15 -1.41 10.04 -39.54 -0.40 -1.81 16 27 C -0.09 -0.91 10.04 -39.61 -0.40 -1.31 16 28 C -0.16 -1.89 8.55 -39.38 -0.34 -2.22 16 29 N -0.30 -6.97 12.42 31.44 0.39 -6.58 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 33 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 34 H 0.16 3.16 5.92 -52.49 -0.31 2.85 16 35 H 0.41 4.96 8.82 -40.82 -0.36 4.60 16 36 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.50 5.96 -51.93 -0.31 0.19 16 42 H 0.12 0.99 6.80 -52.49 -0.36 0.63 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 46 H 0.12 1.47 5.55 -52.48 -0.29 1.18 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -33.86 379.28 -10.46 -44.31 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.15 Total: 6.47 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -5.19 Total: -9.71 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.12 Total: -54.24 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.86 -10.46 -44.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377465967.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.802 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds