Wall clock time and date at job start Sat Apr 11 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00048 * 2 1 4 4 H 1.48497 * 109.47053 * 240.00007 * 3 2 1 5 5 H 1.48500 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47261 * 119.99703 * 3 2 1 7 7 C 1.37874 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99703 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00272 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47360 * 179.97438 * 9 7 2 11 11 C 1.34970 * 125.97735 * 125.01392 * 10 9 7 12 12 C 1.35235 * 107.86395 * 179.69370 * 11 10 9 13 13 C 1.40416 * 107.86519 * 0.43070 * 12 11 10 14 14 N 1.40152 * 125.97147 * 179.82499 * 13 12 11 15 15 C 1.34782 * 120.00022 * 359.71733 * 14 13 12 16 16 O 1.21281 * 120.00130 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99928 * 179.97438 * 15 14 13 18 18 H 1.09007 * 110.42041 * 302.31471 * 17 15 14 19 19 C 1.54910 * 110.37422 * 64.62645 * 17 15 14 20 20 C 1.55140 * 101.65219 * 155.89744 * 19 17 15 21 21 C 1.54316 * 103.02151 * 324.35340 * 20 19 17 22 22 N 1.47442 * 107.23669 * 22.27940 * 21 20 19 23 23 C 1.39675 * 111.00257 * 123.25912 * 22 21 20 24 24 C 1.38915 * 120.07122 * 36.70162 * 23 22 21 25 25 C 1.38100 * 119.92462 * 180.02562 * 24 23 22 26 26 C 1.38296 * 120.07254 * 0.02562 * 25 24 23 27 27 C 1.38285 * 120.15078 * 0.27351 * 26 25 24 28 28 C 1.38102 * 120.07108 * 359.44690 * 27 26 25 29 29 N 1.31215 * 108.05012 * 359.56679 * 13 12 11 30 30 H 0.97001 * 119.99774 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.46966 * 59.99435 * 9 7 2 32 32 H 1.08995 * 109.47140 * 299.99809 * 9 7 2 33 33 H 1.08001 * 126.06598 * 359.97438 * 11 10 9 34 34 H 1.08001 * 126.06893 * 180.25861 * 12 11 10 35 35 H 0.97001 * 120.00057 * 179.71846 * 14 13 12 36 36 H 1.08997 * 110.98455 * 37.81037 * 19 17 15 37 37 H 1.09004 * 111.02490 * 274.00532 * 19 17 15 38 38 H 1.08997 * 110.70855 * 205.96538 * 20 19 17 39 39 H 1.09004 * 110.70399 * 82.72785 * 20 19 17 40 40 H 1.09007 * 109.88625 * 262.87583 * 21 20 19 41 41 H 1.08999 * 110.02836 * 141.76181 * 21 20 19 42 42 H 1.08000 * 120.03856 * 0.02562 * 24 23 22 43 43 H 1.07995 * 119.96379 * 179.97438 * 25 24 23 44 44 H 1.08001 * 119.92099 * 180.02562 * 26 25 24 45 45 H 1.07999 * 119.96403 * 179.70216 * 27 26 25 46 46 H 1.08004 * 120.03839 * 180.27480 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2419 -4.6226 0.8951 12 6 3.2562 -5.4465 0.5468 13 6 3.8681 -4.9153 -0.5999 14 7 4.9636 -5.4664 -1.2786 15 6 5.5275 -6.6070 -0.8340 16 8 5.0867 -7.1567 0.1531 17 6 6.7050 -7.1998 -1.5641 18 1 6.4466 -7.3989 -2.6042 19 6 7.9243 -6.2477 -1.4840 20 6 9.1052 -7.2328 -1.6884 21 6 8.6228 -8.5084 -0.9661 22 7 7.1515 -8.4419 -0.8979 23 6 6.5715 -9.5650 -1.4923 24 6 7.1731 -10.8103 -1.3619 25 6 6.5973 -11.9186 -1.9513 26 6 5.4236 -11.7896 -2.6712 27 6 4.8255 -10.5503 -2.8082 28 6 5.3929 -9.4389 -2.2165 29 7 3.2316 -3.8159 -0.9283 30 1 -0.4850 0.8401 0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 1.5777 -4.7524 1.7368 34 1 3.5460 -6.3508 1.0612 35 1 5.3159 -5.0270 -2.0683 36 1 7.9810 -5.7674 -0.5072 37 1 7.8932 -5.5046 -2.2810 38 1 10.0132 -6.8475 -1.2248 39 1 9.2653 -7.4278 -2.7488 40 1 9.0394 -8.5445 0.0406 41 1 8.9285 -9.3924 -1.5256 42 1 8.0899 -10.9117 -0.8001 43 1 7.0646 -12.8870 -1.8506 44 1 4.9753 -12.6580 -3.1308 45 1 3.9116 -10.4522 -3.3751 46 1 4.9229 -8.4720 -2.3201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377465967.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:02 Heat of formation + Delta-G solvation = 74.975630 kcal Electronic energy + Delta-G solvation = -28685.007408 eV Core-core repulsion = 24769.064913 eV Total energy + Delta-G solvation = -3915.942495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.39838 -41.74473 -40.07961 -38.45022 -36.24107 -35.29896 -33.65398 -32.92652 -32.21942 -31.00513 -30.43227 -29.28894 -28.52051 -25.48837 -24.49337 -23.92836 -23.18617 -22.26348 -21.61609 -21.25508 -20.68346 -18.88941 -18.67987 -18.48817 -18.07818 -17.10660 -16.60682 -16.53506 -16.37093 -16.15453 -15.82345 -15.60034 -15.31627 -14.71491 -14.68495 -14.50444 -14.27144 -14.21241 -14.03917 -13.85922 -13.74544 -13.66380 -13.02454 -12.94101 -12.72534 -12.70564 -12.40017 -12.29274 -12.12963 -12.05963 -11.88599 -11.71768 -11.62277 -11.40971 -10.99590 -10.72847 -10.61997 -9.84845 -9.78296 -9.14929 -8.75962 -8.33657 -6.47956 0.47555 0.48881 0.91641 1.26875 1.37565 1.39965 1.42592 1.49513 2.18571 2.19429 2.36359 2.71109 2.98081 3.00018 3.30634 3.44431 3.73704 3.87699 3.99248 3.99555 4.07973 4.11868 4.24157 4.31174 4.40125 4.55622 4.58940 4.61457 4.74544 4.78979 4.82153 4.87425 4.89851 4.90544 4.99475 5.00947 5.09699 5.12844 5.20509 5.26939 5.52340 5.55518 5.66954 5.77992 5.81577 5.89950 5.92301 6.22315 6.27667 6.31619 6.63315 6.99035 7.10484 7.21907 8.73936 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.002337 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.878548 B =11979.948364 C =12911.405174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.053 0.947 9 C 0.273 3.727 10 N -0.343 5.343 11 C 0.056 3.944 12 C -0.295 4.295 13 C 0.268 3.732 14 N -0.623 5.623 15 C 0.524 3.476 16 O -0.528 6.528 17 C 0.063 3.937 18 H 0.114 0.886 19 C -0.122 4.122 20 C -0.128 4.128 21 C 0.035 3.965 22 N -0.476 5.476 23 C 0.107 3.893 24 C -0.165 4.165 25 C -0.091 4.091 26 C -0.159 4.159 27 C -0.100 4.100 28 C -0.185 4.185 29 N -0.342 5.342 30 H 0.273 0.727 31 H 0.022 0.978 32 H 0.058 0.942 33 H 0.200 0.800 34 H 0.162 0.838 35 H 0.423 0.577 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.141 0.859 43 H 0.149 0.851 44 H 0.141 0.859 45 H 0.130 0.870 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.294 -21.385 -6.643 29.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.071 0.929 9 C 0.154 3.846 10 N -0.125 5.125 11 C -0.092 4.092 12 C -0.326 4.326 13 C 0.013 3.987 14 N -0.274 5.274 15 C 0.311 3.689 16 O -0.400 6.400 17 C -0.048 4.048 18 H 0.131 0.869 19 C -0.161 4.161 20 C -0.166 4.166 21 C -0.089 4.089 22 N -0.189 5.189 23 C 0.008 3.992 24 C -0.185 4.185 25 C -0.110 4.110 26 C -0.178 4.178 27 C -0.119 4.119 28 C -0.207 4.207 29 N -0.173 5.173 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.217 0.783 34 H 0.179 0.821 35 H 0.261 0.739 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.159 0.841 43 H 0.167 0.833 44 H 0.159 0.841 45 H 0.148 0.852 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 18.581 -20.551 -6.186 28.388 hybrid contribution -0.119 0.665 -0.198 0.704 sum 18.462 -19.886 -6.384 27.876 Atomic orbital electron populations 1.69992 1.07242 1.28860 1.49839 1.25759 0.95864 1.02777 0.93862 0.85392 0.78283 0.77761 0.78956 1.19705 1.19809 1.19483 1.21358 0.93376 0.90897 1.52963 0.92894 1.19343 0.85666 0.81505 0.98087 1.48850 1.23907 1.20277 1.19485 1.23134 1.00479 0.88869 0.96750 1.21672 1.02412 1.06362 1.02185 1.19414 0.91616 0.93175 0.94466 1.42565 1.28808 1.25307 1.30723 1.21058 0.84116 0.78938 0.84826 1.90637 1.62414 1.60382 1.26596 1.22669 0.93782 0.91210 0.97094 0.86889 1.22856 0.91343 0.97455 1.04402 1.22798 0.98371 0.93189 1.02228 1.23270 0.82727 1.00226 1.02695 1.59892 1.08928 0.99943 1.50127 1.19268 0.95242 0.91863 0.92845 1.21069 1.02206 0.91122 1.04145 1.21343 0.95190 0.98906 0.95525 1.21350 0.97108 0.97565 1.01751 1.21216 0.99561 0.92686 0.98398 1.21029 0.97881 0.99539 1.02206 1.77247 1.04673 1.18061 1.17327 0.91817 0.96029 0.92455 0.78345 0.82065 0.73886 0.90923 0.86798 0.87915 0.88995 0.89378 0.89338 0.84102 0.83294 0.84108 0.85227 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.40 13.29 21.45 0.28 -52.12 16 2 C 0.02 0.99 5.46 84.65 0.46 1.45 16 3 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -31.05 9.24 25.60 0.24 -30.82 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.27 14.31 6.26 85.63 0.54 14.85 16 10 N -0.34 -16.42 3.67 -351.85 -1.29 -17.71 16 11 C 0.06 2.30 11.44 83.52 0.96 3.26 16 12 C -0.30 -12.05 9.61 22.11 0.21 -11.83 16 13 C 0.27 10.89 8.11 133.33 1.08 11.97 16 14 N -0.62 -19.02 5.43 -307.52 -1.67 -20.69 16 15 C 0.52 15.28 5.96 87.66 0.52 15.80 16 16 O -0.53 -19.64 13.62 -3.03 -0.04 -19.68 16 17 C 0.06 1.25 2.16 44.64 0.10 1.35 16 18 H 0.11 1.92 6.47 -2.38 -0.02 1.90 16 19 C -0.12 -1.69 6.47 31.98 0.21 -1.49 16 20 C -0.13 -1.19 6.94 31.77 0.22 -0.97 16 21 C 0.04 0.47 6.18 86.65 0.54 1.01 16 22 N -0.48 -10.11 4.45 -665.73 -2.96 -13.07 16 23 C 0.11 2.35 5.78 38.21 0.22 2.57 16 24 C -0.16 -2.91 8.59 22.40 0.19 -2.72 16 25 C -0.09 -1.40 10.04 22.25 0.22 -1.17 16 26 C -0.16 -2.63 10.04 22.29 0.22 -2.41 16 27 C -0.10 -2.02 10.04 22.25 0.22 -1.80 16 28 C -0.19 -4.38 8.55 22.40 0.19 -4.19 16 29 N -0.34 -16.05 12.42 -54.45 -0.68 -16.73 16 30 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.06 2.95 8.07 -2.39 -0.02 2.93 16 33 H 0.20 6.50 8.06 -2.91 -0.02 6.48 16 34 H 0.16 6.54 5.92 -2.91 -0.02 6.52 16 35 H 0.42 10.14 8.82 -92.71 -0.82 9.32 16 36 H 0.07 1.25 8.05 -2.39 -0.02 1.23 16 37 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.09 0.94 5.96 -2.39 -0.01 0.93 16 42 H 0.14 1.92 6.80 -2.91 -0.02 1.90 16 43 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 45 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 46 H 0.10 2.66 5.55 -2.91 -0.02 2.64 16 Total: -1.00 -74.58 379.28 2.21 -72.37 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.20 Total: 27.18 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 6.34 Total: -5.15 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -6.31 Total: -120.31 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.04 Total: -19.68 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -74.58 2.21 -72.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377465967.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.347 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds