Wall clock time and date at job start Sat Apr 11 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99677 * 2 1 4 4 H 1.48498 * 109.47299 * 274.87701 * 3 2 1 5 5 H 1.48496 * 109.47393 * 34.88205 * 3 2 1 6 6 H 1.48503 * 109.46894 * 154.88036 * 3 2 1 7 7 C 1.37873 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00165 * 5.06119 * 7 2 1 9 9 C 1.50706 * 119.99828 * 185.06790 * 7 2 1 10 10 N 1.46497 * 109.47028 * 174.79771 * 9 7 2 11 11 C 1.46507 * 119.99558 * 262.00288 * 10 9 7 12 12 C 1.50702 * 109.46743 * 269.99894 * 11 10 9 13 13 C 1.38682 * 120.41645 * 269.72023 * 12 11 10 14 14 C 1.38628 * 118.41669 * 179.78655 * 13 12 11 15 15 C 1.38228 * 119.16134 * 0.51375 * 14 13 12 16 16 N 1.31852 * 120.76203 * 359.72591 * 15 14 13 17 17 C 1.31887 * 121.72855 * 0.02562 * 16 15 14 18 18 C 1.34778 * 120.00368 * 81.99965 * 10 9 7 19 19 O 1.21683 * 119.99903 * 181.81316 * 18 10 9 20 20 C 1.46764 * 119.99817 * 1.81633 * 18 10 9 21 21 C 1.36828 * 126.91252 * 349.33828 * 20 18 10 22 22 N 1.33460 * 107.83314 * 179.97438 * 21 20 18 23 23 C 1.30558 * 109.68444 * 359.97438 * 22 21 20 24 24 N 1.34873 * 108.98743 * 0.05733 * 23 22 21 25 25 C 1.46442 * 124.99205 * 179.87859 * 24 23 22 26 26 C 1.53262 * 108.81786 * 342.94787 * 25 24 23 27 27 C 1.53306 * 109.43381 * 50.25782 * 26 25 24 28 28 C 1.51114 * 127.09054 * 180.08553 * 23 22 21 29 29 H 0.97004 * 120.00282 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47234 * 54.79162 * 9 7 2 31 31 H 1.09004 * 109.46823 * 294.79057 * 9 7 2 32 32 H 1.08998 * 109.47288 * 29.99871 * 11 10 9 33 33 H 1.09004 * 109.46628 * 149.99918 * 11 10 9 34 34 H 1.08002 * 120.78890 * 0.02562 * 13 12 11 35 35 H 1.07997 * 120.41603 * 180.22161 * 14 13 12 36 36 H 1.07997 * 119.62146 * 179.74667 * 15 14 13 37 37 H 1.08008 * 119.61621 * 179.97438 * 17 16 15 38 38 H 1.08000 * 126.08763 * 359.97438 * 21 20 18 39 39 H 1.09003 * 109.58045 * 102.74741 * 25 24 23 40 40 H 1.08998 * 109.58118 * 223.15000 * 25 24 23 41 41 H 1.09002 * 109.47816 * 170.21783 * 26 25 24 42 42 H 1.08999 * 109.47995 * 290.23836 * 26 25 24 43 43 H 1.09003 * 109.55441 * 170.73582 * 27 26 25 44 44 H 1.09002 * 109.53837 * 50.55225 * 27 26 25 45 45 H 1.09001 * 109.70707 * 283.65186 * 28 23 22 46 46 H 1.09004 * 109.70733 * 44.23059 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3935 2.1060 -1.3950 5 1 1.5019 2.6207 0.8006 6 1 3.5944 1.4127 0.5944 7 6 2.0045 -1.1940 -0.0005 8 1 1.4677 -2.1275 -0.0835 9 6 3.5071 -1.1966 0.1148 10 7 3.9868 -2.5771 0.2155 11 6 4.2969 -3.1509 1.5274 12 6 5.7435 -2.8905 1.8602 13 6 6.7227 -3.8029 1.4971 14 6 8.0408 -3.5195 1.8200 15 6 8.3318 -2.3505 2.4979 16 7 7.3739 -1.5082 2.8316 17 6 6.1101 -1.7427 2.5365 18 6 4.1427 -3.3194 -0.8986 19 8 4.5095 -4.4765 -0.8124 20 6 3.8701 -2.7322 -2.2157 21 6 3.2658 -1.5314 -2.4710 22 7 3.2122 -1.3742 -3.7952 23 6 3.7495 -2.4087 -4.3830 24 7 4.1711 -3.2782 -3.4421 25 6 4.8244 -4.5600 -3.7155 26 6 4.5693 -4.9430 -5.1773 27 6 4.9220 -3.7583 -6.0841 28 6 3.8972 -2.6375 -5.8694 29 1 -0.4851 0.8401 0.0004 30 1 3.8042 -0.6428 1.0053 31 1 3.9400 -0.7251 -0.7676 32 1 3.6615 -2.6913 2.2844 33 1 4.1168 -4.2257 1.5056 34 1 6.4650 -4.7107 0.9718 35 1 8.8296 -4.2058 1.5496 36 1 9.3556 -2.1244 2.7568 37 1 5.3529 -1.0293 2.8267 38 1 2.8977 -0.8348 -1.7323 39 1 5.8969 -4.4673 -3.5440 40 1 4.4126 -5.3271 -3.0597 41 1 5.1889 -5.7998 -5.4420 42 1 3.5182 -5.2005 -5.3075 43 1 4.8999 -4.0771 -7.1262 44 1 5.9185 -3.3930 -5.8356 45 1 2.9369 -2.9313 -6.2933 46 1 4.2464 -1.7232 -6.3491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378233833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:06 Heat of formation + Delta-G solvation = 80.973538 kcal Electronic energy + Delta-G solvation = -30270.043151 eV Core-core repulsion = 26354.360745 eV Total energy + Delta-G solvation = -3915.682406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.96635 -40.14727 -38.78134 -36.54904 -35.49609 -33.31336 -32.83849 -32.26756 -31.56275 -29.69710 -28.76683 -28.14707 -26.09495 -24.22302 -23.49083 -22.93087 -22.38550 -21.74100 -21.25869 -19.37749 -18.43123 -17.23295 -16.95963 -16.68416 -16.15686 -15.81021 -15.78784 -15.35999 -15.15366 -14.47831 -14.41263 -14.19715 -14.11358 -13.80593 -13.67037 -13.45113 -13.14989 -13.05233 -12.92007 -12.80793 -12.51311 -11.96634 -11.73129 -11.46970 -11.30731 -11.21131 -11.15623 -11.10306 -10.90896 -10.43729 -10.28835 -9.85879 -9.69938 -9.63581 -9.36799 -9.23379 -9.14473 -8.89443 -8.77640 -8.00639 -7.77526 -6.29539 -4.31768 1.16998 1.40167 1.91131 2.91318 3.19464 3.25009 3.30228 3.38757 3.70403 3.97914 4.09773 4.21433 4.42176 4.54576 4.56654 4.61913 4.69993 4.90404 5.01210 5.02661 5.09216 5.16527 5.19839 5.24933 5.31968 5.51747 5.53762 5.56590 5.67102 5.74021 5.76622 5.78084 5.91044 5.93571 6.02306 6.05444 6.23197 6.26973 6.36099 6.45905 6.55634 6.69515 6.80663 7.14102 7.28390 7.37280 7.61121 7.94211 8.06317 8.26967 8.52473 8.73563 8.81056 9.25772 10.81960 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007725 B = 0.005623 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3623.760542 B = 4978.713851 C = 7610.020293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.084 3.916 3 Si 0.855 3.145 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.189 3.811 10 N -0.573 5.573 11 C 0.164 3.836 12 C -0.147 4.147 13 C -0.055 4.055 14 C -0.180 4.180 15 C 0.091 3.909 16 N -0.489 5.489 17 C 0.113 3.887 18 C 0.603 3.397 19 O -0.578 6.578 20 C -0.092 4.092 21 C 0.046 3.954 22 N -0.501 5.501 23 C 0.212 3.788 24 N -0.430 5.430 25 C 0.107 3.893 26 C -0.136 4.136 27 C -0.125 4.125 28 C -0.032 4.032 29 H 0.270 0.730 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.231 0.769 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.253 -7.968 -5.212 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.122 4.122 3 Si 0.680 3.320 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.183 1.183 7 C -0.585 4.585 8 H 0.101 0.899 9 C 0.068 3.932 10 N -0.301 5.301 11 C 0.040 3.960 12 C -0.151 4.151 13 C -0.081 4.081 14 C -0.200 4.200 15 C -0.066 4.066 16 N -0.197 5.197 17 C -0.045 4.045 18 C 0.393 3.607 19 O -0.461 6.461 20 C -0.206 4.206 21 C -0.106 4.106 22 N -0.220 5.220 23 C -0.050 4.050 24 N -0.113 5.113 25 C -0.015 4.015 26 C -0.173 4.173 27 C -0.163 4.163 28 C -0.071 4.071 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.168 0.832 37 H 0.174 0.826 38 H 0.246 0.754 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.107 0.893 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.216 -7.154 -5.103 15.870 hybrid contribution 0.346 -0.566 0.001 0.664 sum 13.562 -7.720 -5.102 16.418 Atomic orbital electron populations 1.69874 1.06246 1.27543 1.47425 1.24856 0.94775 0.98760 0.93805 0.87165 0.80813 0.84281 0.79701 1.18941 1.20394 1.18311 1.21269 0.88961 0.95553 1.52703 0.89916 1.20532 0.96019 0.78037 0.98625 1.47527 1.63277 1.15221 1.04093 1.20196 0.89817 1.00610 0.85362 1.21436 0.98066 0.96104 0.99449 1.21669 0.92252 0.99118 0.95076 1.22115 0.97291 0.99265 1.01352 1.22709 0.98618 0.90483 0.94789 1.67701 1.01088 1.31427 1.19527 1.22794 0.93041 0.94817 0.93799 1.16664 0.76606 0.84582 0.82817 1.90654 1.50838 1.17133 1.87498 1.20483 1.15020 0.99084 0.86054 1.25170 0.96425 0.96328 0.92649 1.70108 1.20854 1.23423 1.07656 1.23410 1.00423 0.87953 0.93207 1.44983 1.44291 1.16650 1.05376 1.21952 0.98009 0.84120 0.97404 1.21967 1.03291 0.98904 0.93179 1.21710 0.99311 0.95010 1.00277 1.20197 1.00513 0.99898 0.86523 0.92015 0.94178 0.93933 0.88525 0.89186 0.84422 0.85195 0.83200 0.82564 0.75370 0.90357 0.88174 0.89537 0.90645 0.90171 0.91259 0.89301 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.79 13.96 55.43 0.77 -24.02 16 2 C 0.08 2.20 5.24 -17.82 -0.09 2.11 16 3 Si 0.86 19.35 27.08 -169.99 -4.60 14.75 16 4 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.26 -5.49 6.38 56.52 0.36 -5.13 16 7 C -0.55 -13.87 7.44 -34.44 -0.26 -14.12 16 8 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 9 C 0.19 4.09 3.77 -5.19 -0.02 4.07 16 10 N -0.57 -11.48 2.47 -177.94 -0.44 -11.92 16 11 C 0.16 2.75 5.54 -5.19 -0.03 2.72 16 12 C -0.15 -2.28 5.48 -104.48 -0.57 -2.86 16 13 C -0.05 -0.78 9.86 -39.27 -0.39 -1.17 16 14 C -0.18 -2.22 10.11 -39.44 -0.40 -2.62 16 15 C 0.09 1.17 11.18 -17.55 -0.20 0.98 16 16 N -0.49 -7.52 10.36 -13.25 -0.14 -7.66 16 17 C 0.11 1.74 10.86 -17.55 -0.19 1.55 16 18 C 0.60 12.66 7.56 -12.81 -0.10 12.57 16 19 O -0.58 -12.04 14.66 5.20 0.08 -11.97 16 20 C -0.09 -1.97 6.77 -82.36 -0.56 -2.52 16 21 C 0.05 1.05 9.19 -17.35 -0.16 0.89 16 22 N -0.50 -10.84 11.20 -10.35 -0.12 -10.96 16 23 C 0.21 3.77 7.63 -155.32 -1.19 2.58 16 24 N -0.43 -7.76 3.15 -109.76 -0.35 -8.11 16 25 C 0.11 1.49 6.26 -3.94 -0.02 1.46 16 26 C -0.14 -1.34 5.95 -26.44 -0.16 -1.50 16 27 C -0.13 -1.15 5.97 -26.38 -0.16 -1.31 16 28 C -0.03 -0.39 6.33 -27.49 -0.17 -0.57 16 29 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 30 H 0.04 0.83 6.92 -51.93 -0.36 0.47 16 31 H 0.04 0.96 4.49 -51.93 -0.23 0.73 16 32 H 0.10 1.53 8.02 -51.93 -0.42 1.11 16 33 H 0.09 1.49 7.35 -51.93 -0.38 1.11 16 34 H 0.14 1.97 7.79 -52.49 -0.41 1.56 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.16 2.27 8.06 -52.48 -0.42 1.85 16 38 H 0.23 5.57 2.50 -52.49 -0.13 5.44 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.10 1.51 7.18 -51.93 -0.37 1.13 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.78 8.12 -51.93 -0.42 0.35 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -32.00 370.38 -10.00 -41.99 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.13 Total: 10.02 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -4.66 Total: 2.27 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.26 Total: -62.66 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.60 Total: 14.75 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.00 -10.00 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378233833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.966 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds