Wall clock time and date at job start Sat Apr 11 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99677 * 2 1 4 4 H 1.48498 * 109.47299 * 274.87701 * 3 2 1 5 5 H 1.48496 * 109.47393 * 34.88205 * 3 2 1 6 6 H 1.48503 * 109.46894 * 154.88036 * 3 2 1 7 7 C 1.37873 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00165 * 5.06119 * 7 2 1 9 9 C 1.50706 * 119.99828 * 185.06790 * 7 2 1 10 10 N 1.46497 * 109.47028 * 174.79771 * 9 7 2 11 11 C 1.46507 * 119.99558 * 262.00288 * 10 9 7 12 12 C 1.50702 * 109.46743 * 269.99894 * 11 10 9 13 13 C 1.38682 * 120.41645 * 269.72023 * 12 11 10 14 14 C 1.38628 * 118.41669 * 179.78655 * 13 12 11 15 15 C 1.38228 * 119.16134 * 0.51375 * 14 13 12 16 16 N 1.31852 * 120.76203 * 359.72591 * 15 14 13 17 17 C 1.31887 * 121.72855 * 0.02562 * 16 15 14 18 18 C 1.34778 * 120.00368 * 81.99965 * 10 9 7 19 19 O 1.21683 * 119.99903 * 181.81316 * 18 10 9 20 20 C 1.46764 * 119.99817 * 1.81633 * 18 10 9 21 21 C 1.36828 * 126.91252 * 349.33828 * 20 18 10 22 22 N 1.33460 * 107.83314 * 179.97438 * 21 20 18 23 23 C 1.30558 * 109.68444 * 359.97438 * 22 21 20 24 24 N 1.34873 * 108.98743 * 0.05733 * 23 22 21 25 25 C 1.46442 * 124.99205 * 179.87859 * 24 23 22 26 26 C 1.53262 * 108.81786 * 342.94787 * 25 24 23 27 27 C 1.53306 * 109.43381 * 50.25782 * 26 25 24 28 28 C 1.51114 * 127.09054 * 180.08553 * 23 22 21 29 29 H 0.97004 * 120.00282 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47234 * 54.79162 * 9 7 2 31 31 H 1.09004 * 109.46823 * 294.79057 * 9 7 2 32 32 H 1.08998 * 109.47288 * 29.99871 * 11 10 9 33 33 H 1.09004 * 109.46628 * 149.99918 * 11 10 9 34 34 H 1.08002 * 120.78890 * 0.02562 * 13 12 11 35 35 H 1.07997 * 120.41603 * 180.22161 * 14 13 12 36 36 H 1.07997 * 119.62146 * 179.74667 * 15 14 13 37 37 H 1.08008 * 119.61621 * 179.97438 * 17 16 15 38 38 H 1.08000 * 126.08763 * 359.97438 * 21 20 18 39 39 H 1.09003 * 109.58045 * 102.74741 * 25 24 23 40 40 H 1.08998 * 109.58118 * 223.15000 * 25 24 23 41 41 H 1.09002 * 109.47816 * 170.21783 * 26 25 24 42 42 H 1.08999 * 109.47995 * 290.23836 * 26 25 24 43 43 H 1.09003 * 109.55441 * 170.73582 * 27 26 25 44 44 H 1.09002 * 109.53837 * 50.55225 * 27 26 25 45 45 H 1.09001 * 109.70707 * 283.65186 * 28 23 22 46 46 H 1.09004 * 109.70733 * 44.23059 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3935 2.1060 -1.3950 5 1 1.5019 2.6207 0.8006 6 1 3.5944 1.4127 0.5944 7 6 2.0045 -1.1940 -0.0005 8 1 1.4677 -2.1275 -0.0835 9 6 3.5071 -1.1966 0.1148 10 7 3.9868 -2.5771 0.2155 11 6 4.2969 -3.1509 1.5274 12 6 5.7435 -2.8905 1.8602 13 6 6.7227 -3.8029 1.4971 14 6 8.0408 -3.5195 1.8200 15 6 8.3318 -2.3505 2.4979 16 7 7.3739 -1.5082 2.8316 17 6 6.1101 -1.7427 2.5365 18 6 4.1427 -3.3194 -0.8986 19 8 4.5095 -4.4765 -0.8124 20 6 3.8701 -2.7322 -2.2157 21 6 3.2658 -1.5314 -2.4710 22 7 3.2122 -1.3742 -3.7952 23 6 3.7495 -2.4087 -4.3830 24 7 4.1711 -3.2782 -3.4421 25 6 4.8244 -4.5600 -3.7155 26 6 4.5693 -4.9430 -5.1773 27 6 4.9220 -3.7583 -6.0841 28 6 3.8972 -2.6375 -5.8694 29 1 -0.4851 0.8401 0.0004 30 1 3.8042 -0.6428 1.0053 31 1 3.9400 -0.7251 -0.7676 32 1 3.6615 -2.6913 2.2844 33 1 4.1168 -4.2257 1.5056 34 1 6.4650 -4.7107 0.9718 35 1 8.8296 -4.2058 1.5496 36 1 9.3556 -2.1244 2.7568 37 1 5.3529 -1.0293 2.8267 38 1 2.8977 -0.8348 -1.7323 39 1 5.8969 -4.4673 -3.5440 40 1 4.4126 -5.3271 -3.0597 41 1 5.1889 -5.7998 -5.4420 42 1 3.5182 -5.2005 -5.3075 43 1 4.8999 -4.0771 -7.1262 44 1 5.9185 -3.3930 -5.8356 45 1 2.9369 -2.9313 -6.2933 46 1 4.2464 -1.7232 -6.3491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378233833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:05 Heat of formation + Delta-G solvation = 61.551398 kcal Electronic energy + Delta-G solvation = -30270.885358 eV Core-core repulsion = 26354.360745 eV Total energy + Delta-G solvation = -3916.524613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.43142 -41.34442 -40.26135 -37.76591 -36.98584 -34.99369 -34.12279 -33.73402 -32.73999 -30.98842 -30.14002 -29.82422 -27.41905 -25.36232 -24.86828 -24.41138 -23.71341 -22.84399 -22.76424 -20.76527 -19.71701 -19.18585 -18.24720 -18.01963 -17.57238 -17.15143 -17.05815 -16.77589 -16.51020 -16.11129 -15.67660 -15.47873 -15.15178 -15.07484 -14.87262 -14.75978 -14.61824 -14.32456 -14.27627 -14.16417 -13.93737 -13.39990 -12.93630 -12.85034 -12.74912 -12.71259 -12.28901 -12.11696 -12.02142 -12.00968 -11.85742 -11.75965 -11.26044 -10.90747 -10.84643 -10.71981 -10.58974 -10.49103 -10.02137 -9.63742 -9.33965 -8.35236 -6.40566 0.07364 0.30057 0.36143 1.36283 1.41328 1.46018 1.55298 1.85104 2.28978 2.31316 2.33777 2.91539 2.99902 3.34107 3.50144 3.51426 3.63295 3.77429 3.80471 3.82725 3.93009 4.06009 4.07348 4.24021 4.34246 4.41989 4.48218 4.49931 4.56074 4.62084 4.66442 4.69298 4.79902 4.82000 4.85115 4.90177 4.93509 5.06877 5.16573 5.22017 5.26682 5.33599 5.34512 5.52566 5.71198 5.74514 6.10638 6.22487 6.39711 6.64008 6.95836 6.98102 7.13463 7.22272 8.80461 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007725 B = 0.005623 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3623.760542 B = 4978.713851 C = 7610.020293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.035 3.965 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.233 1.233 7 C -0.533 4.533 8 H 0.035 0.965 9 C 0.201 3.799 10 N -0.575 5.575 11 C 0.163 3.837 12 C -0.158 4.158 13 C -0.064 4.064 14 C -0.169 4.169 15 C 0.092 3.908 16 N -0.509 5.509 17 C 0.101 3.899 18 C 0.597 3.403 19 O -0.582 6.582 20 C -0.113 4.113 21 C 0.019 3.981 22 N -0.541 5.541 23 C 0.223 3.777 24 N -0.430 5.430 25 C 0.099 3.901 26 C -0.128 4.128 27 C -0.116 4.116 28 C -0.035 4.035 29 H 0.271 0.729 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.166 0.834 36 H 0.186 0.814 37 H 0.158 0.842 38 H 0.210 0.790 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.119 0.881 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.732 -8.708 -6.749 20.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.166 4.166 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.156 1.156 7 C -0.571 4.571 8 H 0.053 0.947 9 C 0.080 3.920 10 N -0.303 5.303 11 C 0.041 3.959 12 C -0.161 4.161 13 C -0.090 4.090 14 C -0.189 4.189 15 C -0.065 4.065 16 N -0.218 5.218 17 C -0.056 4.056 18 C 0.387 3.613 19 O -0.465 6.465 20 C -0.228 4.228 21 C -0.133 4.133 22 N -0.261 5.261 23 C -0.040 4.040 24 N -0.112 5.112 25 C -0.022 4.022 26 C -0.165 4.165 27 C -0.154 4.154 28 C -0.074 4.074 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.152 0.848 35 H 0.183 0.817 36 H 0.203 0.797 37 H 0.175 0.825 38 H 0.225 0.775 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.141 0.859 42 H 0.090 0.910 43 H 0.137 0.863 44 H 0.090 0.910 45 H 0.121 0.879 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.725 -7.932 -6.620 19.658 hybrid contribution -0.700 -0.483 0.425 0.951 sum 16.024 -8.415 -6.194 19.130 Atomic orbital electron populations 1.70010 1.08150 1.28505 1.49829 1.25601 0.95336 1.02274 0.93423 0.86201 0.80760 0.79766 0.79512 1.19404 1.19990 1.15551 1.21240 0.90774 0.93564 1.51568 0.94716 1.20269 0.93362 0.79375 0.99042 1.47565 1.62988 1.14605 1.05160 1.20294 0.91425 1.00267 0.83937 1.21226 0.97128 0.96994 1.00773 1.21770 0.93180 0.98827 0.95262 1.22461 0.97076 0.99482 0.99832 1.23347 0.99625 0.89968 0.93605 1.67735 1.01259 1.32514 1.20282 1.22824 0.93566 0.94902 0.94285 1.16780 0.76713 0.84693 0.83094 1.90628 1.51237 1.17023 1.87642 1.20577 1.15629 0.99176 0.87430 1.24847 0.98034 0.97039 0.93354 1.70036 1.22947 1.25832 1.07236 1.24522 0.97558 0.86404 0.95499 1.45290 1.43849 1.17850 1.04200 1.22296 0.97991 0.81731 1.00169 1.22021 1.03918 1.00486 0.90109 1.21735 0.98108 0.93258 1.02260 1.20579 1.02504 1.02029 0.82285 0.91969 0.92633 0.93966 0.88135 0.89414 0.84781 0.81686 0.79705 0.82500 0.77457 0.89355 0.89873 0.85947 0.91023 0.86262 0.91012 0.87905 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.11 13.96 21.45 0.30 -54.81 16 2 C 0.03 1.90 5.24 84.65 0.44 2.35 16 3 Si 0.92 40.79 27.08 68.60 1.86 42.65 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.23 -9.29 6.38 99.48 0.63 -8.66 16 7 C -0.53 -28.49 7.44 25.60 0.19 -28.30 16 8 H 0.03 2.15 8.06 -2.91 -0.02 2.12 16 9 C 0.20 8.97 3.77 85.64 0.32 9.30 16 10 N -0.58 -23.80 2.47 -835.10 -2.06 -25.86 16 11 C 0.16 5.64 5.54 85.63 0.47 6.11 16 12 C -0.16 -4.85 5.48 -19.77 -0.11 -4.96 16 13 C -0.06 -1.75 9.86 22.47 0.22 -1.53 16 14 C -0.17 -3.67 10.11 22.36 0.23 -3.44 16 15 C 0.09 2.08 11.18 84.69 0.95 3.03 16 16 N -0.51 -14.77 10.36 -195.85 -2.03 -16.80 16 17 C 0.10 3.05 10.86 84.67 0.92 3.97 16 18 C 0.60 25.84 7.56 86.47 0.65 26.50 16 19 O -0.58 -24.69 14.66 -4.30 -0.06 -24.75 16 20 C -0.11 -4.95 6.77 40.14 0.27 -4.68 16 21 C 0.02 0.92 9.19 84.11 0.77 1.69 16 22 N -0.54 -23.93 11.20 -186.67 -2.09 -26.02 16 23 C 0.22 7.81 7.63 138.30 1.06 8.86 16 24 N -0.43 -15.44 3.15 -501.18 -1.58 -17.02 16 25 C 0.10 2.60 6.26 86.48 0.54 3.14 16 26 C -0.13 -2.08 5.95 30.78 0.18 -1.90 16 27 C -0.12 -1.63 5.97 30.82 0.18 -1.45 16 28 C -0.04 -0.76 6.33 30.10 0.19 -0.57 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.06 2.31 6.92 -2.39 -0.02 2.29 16 31 H 0.04 1.95 4.49 -2.38 -0.01 1.94 16 32 H 0.10 3.30 8.02 -2.39 -0.02 3.28 16 33 H 0.09 3.02 7.35 -2.39 -0.02 3.00 16 34 H 0.13 3.74 7.79 -2.91 -0.02 3.71 16 35 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.16 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.21 10.65 2.50 -2.91 -0.01 10.64 16 39 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.08 2.47 7.18 -2.39 -0.02 2.45 16 41 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 43 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 45 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -74.82 370.38 2.76 -72.05 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.94 Total: 32.44 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 7.49 Total: 18.12 kcal Atomic # 7 Polarization: -133.06 SS G_CDS: -7.46 Total: -140.52 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.06 Total: -24.75 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.86 Total: 42.65 kcal Total: -74.82 2.76 -72.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378233833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.606 kcal (2) G-P(sol) polarization free energy of solvation -74.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds