Wall clock time and date at job start Sat Apr 11 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48502 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99648 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00475 * 3 2 1 7 7 C 1.37882 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14207 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.41947 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46498 * 109.46847 * 294.81434 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79711 * 11 10 9 13 13 O 1.21578 * 120.00188 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99719 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47293 * 179.97438 * 15 14 12 17 17 C 1.38301 * 119.96539 * 269.72637 * 16 15 14 18 18 C 1.38259 * 120.12946 * 179.72132 * 17 16 15 19 19 C 1.38147 * 120.06001 * 0.55270 * 18 17 16 20 20 C 1.38795 * 119.93745 * 359.72462 * 19 18 17 21 21 N 1.40240 * 120.06657 * 179.97438 * 20 19 18 22 22 C 1.37098 * 126.47293 * 0.02562 * 21 20 19 23 23 C 1.34652 * 106.83577 * 180.02562 * 22 21 20 24 24 N 1.34133 * 108.19348 * 0.02562 * 23 22 21 25 25 C 1.30515 * 109.34858 * 359.71554 * 24 23 22 26 26 C 1.38106 * 119.96811 * 89.99775 * 16 15 14 27 27 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 28 28 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 29 29 H 0.97001 * 119.99858 * 4.99879 * 1 2 3 30 30 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 31 31 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 32 32 H 0.97009 * 120.00281 * 4.79101 * 11 10 9 33 33 H 0.96996 * 120.00344 * 359.97438 * 14 12 11 34 34 H 1.08996 * 109.47160 * 299.99923 * 15 14 12 35 35 H 1.09003 * 109.47395 * 59.99840 * 15 14 12 36 36 H 1.08003 * 119.93981 * 359.97438 * 17 16 15 37 37 H 1.07998 * 119.97363 * 180.25220 * 18 17 16 38 38 H 1.08006 * 120.03339 * 179.74720 * 19 18 17 39 39 H 1.08004 * 126.57980 * 0.02562 * 22 21 20 40 40 H 1.07998 * 125.90515 * 180.02562 * 23 22 21 41 41 H 1.08000 * 125.71795 * 180.29204 * 25 24 23 42 42 H 1.07989 * 120.03005 * 359.97438 * 26 16 15 43 43 H 1.08997 * 117.49622 * 359.97438 * 27 9 7 44 44 H 1.09000 * 117.49928 * 145.02150 * 27 9 7 45 45 H 1.08996 * 117.50254 * 214.97905 * 28 9 7 46 46 H 1.09005 * 117.49689 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2462 2.2511 12 6 2.1054 -3.7588 3.4965 13 8 1.0296 -3.9780 4.0187 14 7 3.2454 -4.0284 4.1629 15 6 3.1882 -4.5851 5.5168 16 6 4.5883 -4.7930 6.0340 17 6 5.2316 -5.9985 5.8206 18 6 6.5183 -6.1910 6.2886 19 6 7.1608 -5.1829 6.9811 20 6 6.5155 -3.9740 7.2018 21 7 7.1650 -2.9491 7.9049 22 6 8.4303 -2.9963 8.4304 23 6 8.6530 -1.8057 9.0187 24 7 7.5570 -1.0488 8.8603 25 6 6.6609 -1.7204 8.1898 26 6 5.2256 -3.7816 6.7256 27 6 1.5731 -3.5804 -0.9271 28 6 0.2453 -2.8219 -0.9976 29 1 -0.4850 0.8369 -0.0732 30 1 0.3751 -2.1615 2.0429 31 1 0.3015 -3.8500 1.4844 32 1 3.0164 -3.0718 1.8343 33 1 4.1037 -3.8539 3.7462 34 1 2.6575 -3.8940 6.1716 35 1 2.6637 -5.5403 5.4951 36 1 4.7295 -6.7898 5.2837 37 1 7.0198 -7.1319 6.1169 38 1 8.1644 -5.3352 7.3500 39 1 9.1168 -3.8287 8.3818 40 1 9.5576 -1.5111 9.5298 41 1 5.6817 -1.3604 7.9105 42 1 4.7213 -2.8420 6.8954 43 1 2.3246 -3.3505 -1.6824 44 1 1.5429 -4.6178 -0.5937 45 1 -0.6578 -3.3606 -0.7106 46 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430702669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:15 Heat of formation + Delta-G solvation = 88.316639 kcal Electronic energy + Delta-G solvation = -27817.217169 eV Core-core repulsion = 23901.853183 eV Total energy + Delta-G solvation = -3915.363986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.65843 -40.02270 -39.19370 -36.81876 -35.29725 -34.02773 -33.30471 -31.98611 -31.69662 -30.23786 -29.46904 -27.07131 -25.75607 -24.75276 -24.01558 -22.73735 -21.20134 -21.13360 -20.68074 -20.37250 -19.41198 -18.80764 -17.68337 -16.72434 -16.40510 -15.98470 -15.86051 -15.62527 -15.07780 -14.97150 -14.65817 -14.45622 -14.08866 -14.07005 -14.04523 -13.77878 -13.48300 -13.20468 -13.01085 -12.80593 -12.63315 -12.09800 -11.76416 -11.56740 -11.55049 -11.03889 -11.01425 -10.95587 -10.53110 -10.42596 -10.25175 -9.89079 -9.54149 -9.39289 -9.10150 -9.05770 -8.96301 -8.68286 -8.50153 -8.25928 -8.03186 -6.08809 -4.18599 0.39889 0.69882 1.88272 2.25883 2.78068 3.02469 3.23973 3.33537 3.34727 3.45385 3.71262 4.05390 4.21061 4.32160 4.33812 4.39349 4.55980 4.73395 4.75910 4.81185 4.92491 5.09764 5.19231 5.20147 5.31084 5.36843 5.39515 5.50732 5.63190 5.83850 5.99783 6.01648 6.07571 6.20681 6.33306 6.36109 6.46058 6.56760 6.61995 6.69262 6.82376 6.85490 7.10993 7.26392 7.39450 7.41336 7.58030 7.63953 7.79955 8.32656 8.58362 8.82895 9.12003 9.48725 10.98365 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.002475 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.969146 B =11310.691620 C =13019.097601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.499 4.499 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.182 3.818 11 N -0.719 5.719 12 C 0.698 3.302 13 O -0.603 6.603 14 N -0.752 5.752 15 C 0.181 3.819 16 C -0.072 4.072 17 C -0.105 4.105 18 C -0.094 4.094 19 C -0.128 4.128 20 C 0.130 3.870 21 N -0.411 5.411 22 C -0.056 4.056 23 C -0.023 4.023 24 N -0.486 5.486 25 C 0.193 3.807 26 C -0.113 4.113 27 C -0.211 4.211 28 C -0.142 4.142 29 H 0.261 0.739 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.397 0.603 33 H 0.395 0.605 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.177 0.823 40 H 0.174 0.826 41 H 0.210 0.790 42 H 0.136 0.864 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.686 -12.336 14.169 24.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.023 3.977 10 C 0.058 3.942 11 N -0.371 5.371 12 C 0.398 3.602 13 O -0.482 6.482 14 N -0.409 5.409 15 C 0.057 3.943 16 C -0.073 4.073 17 C -0.124 4.124 18 C -0.112 4.112 19 C -0.148 4.148 20 C 0.038 3.962 21 N -0.089 5.089 22 C -0.186 4.186 23 C -0.169 4.169 24 N -0.202 5.202 25 C -0.088 4.088 26 C -0.133 4.133 27 C -0.248 4.248 28 C -0.180 4.180 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.231 0.769 33 H 0.229 0.771 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.194 0.806 40 H 0.192 0.808 41 H 0.226 0.774 42 H 0.153 0.847 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.359 -11.627 14.970 23.780 hybrid contribution 1.390 0.346 -0.718 1.603 sum 15.750 -11.281 14.251 24.050 Atomic orbital electron populations 1.70000 1.05864 1.26770 1.48368 1.24989 0.94821 0.98961 0.94319 0.86584 0.80128 0.83879 0.77671 1.19767 1.21025 1.20922 1.20376 0.92607 0.88587 1.52126 0.92233 1.19056 0.99392 0.93282 0.85956 1.20872 0.83196 0.97749 0.92376 1.45167 1.11356 1.66511 1.14098 1.16022 0.83727 0.78794 0.81636 1.90881 1.27790 1.60607 1.68931 1.45095 1.07952 1.71226 1.16639 1.19932 0.91172 1.00021 0.83190 1.19829 0.96307 0.93499 0.97703 1.21270 0.94783 0.97183 0.99137 1.21049 0.94728 0.98726 0.96716 1.20894 1.00615 0.91963 1.01320 1.17800 0.92989 0.88293 0.97151 1.43260 1.13062 1.12250 1.40372 1.22754 0.87710 1.02582 1.05575 1.22392 0.98642 0.91155 1.04702 1.70365 1.01500 1.31516 1.16850 1.25372 1.01248 0.81572 1.00657 1.20806 0.92711 1.00376 0.99435 1.23012 1.00704 0.95589 1.05508 1.22470 0.90803 1.01307 1.03419 0.92908 0.91669 0.94342 0.76947 0.77149 0.90670 0.90491 0.84796 0.84705 0.85161 0.80559 0.80850 0.77355 0.84660 0.90459 0.91736 0.91780 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.07 12.65 55.43 0.70 -23.37 16 2 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 3 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.50 -12.67 8.59 -34.44 -0.30 -12.97 16 8 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 9 C 0.02 0.55 1.47 -155.66 -0.23 0.32 16 10 C 0.18 4.06 5.50 -4.04 -0.02 4.04 16 11 N -0.72 -13.54 5.48 -65.23 -0.36 -13.90 16 12 C 0.70 12.62 8.57 -86.91 -0.74 11.88 16 13 O -0.60 -13.24 16.34 5.30 0.09 -13.16 16 14 N -0.75 -9.69 5.55 -66.42 -0.37 -10.06 16 15 C 0.18 1.95 5.80 -5.20 -0.03 1.92 16 16 C -0.07 -0.61 5.25 -104.65 -0.55 -1.16 16 17 C -0.10 -0.74 9.70 -39.55 -0.38 -1.12 16 18 C -0.09 -0.57 10.04 -39.61 -0.40 -0.97 16 19 C -0.13 -0.87 9.47 -39.41 -0.37 -1.24 16 20 C 0.13 1.10 6.63 -83.58 -0.55 0.54 16 21 N -0.41 -3.79 2.99 -62.10 -0.19 -3.98 16 22 C -0.06 -0.46 10.86 -16.47 -0.18 -0.64 16 23 C -0.02 -0.22 11.85 -17.82 -0.21 -0.43 16 24 N -0.49 -5.80 11.25 -14.48 -0.16 -5.97 16 25 C 0.19 1.96 11.91 -89.64 -1.07 0.90 16 26 C -0.11 -0.96 9.12 -39.41 -0.36 -1.32 16 27 C -0.21 -4.32 9.96 -26.69 -0.27 -4.59 16 28 C -0.14 -3.22 9.14 -26.69 -0.24 -3.46 16 29 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 30 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 32 H 0.40 6.81 8.35 -40.82 -0.34 6.47 16 33 H 0.40 4.28 8.48 -40.82 -0.35 3.93 16 34 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 38 H 0.13 0.64 6.82 -52.48 -0.36 0.28 16 39 H 0.18 0.86 7.15 -52.48 -0.38 0.48 16 40 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.21 1.60 7.07 -52.49 -0.37 1.23 16 42 H 0.14 1.06 6.77 -52.49 -0.36 0.70 16 43 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 394.33 15.07 5.94 5.94 Total: -1.00 -32.81 394.33 -11.70 -44.52 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.33 Total: 10.97 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -6.00 Total: -6.46 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.37 Total: -57.27 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.81 -11.70 -44.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430702669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.835 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds