Wall clock time and date at job start Sat Apr 11 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48502 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99648 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00475 * 3 2 1 7 7 C 1.37882 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14207 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.41947 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46498 * 109.46847 * 294.81434 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79711 * 11 10 9 13 13 O 1.21578 * 120.00188 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99719 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47293 * 179.97438 * 15 14 12 17 17 C 1.38301 * 119.96539 * 269.72637 * 16 15 14 18 18 C 1.38259 * 120.12946 * 179.72132 * 17 16 15 19 19 C 1.38147 * 120.06001 * 0.55270 * 18 17 16 20 20 C 1.38795 * 119.93745 * 359.72462 * 19 18 17 21 21 N 1.40240 * 120.06657 * 179.97438 * 20 19 18 22 22 C 1.37098 * 126.47293 * 0.02562 * 21 20 19 23 23 C 1.34652 * 106.83577 * 180.02562 * 22 21 20 24 24 N 1.34133 * 108.19348 * 0.02562 * 23 22 21 25 25 C 1.30515 * 109.34858 * 359.71554 * 24 23 22 26 26 C 1.38106 * 119.96811 * 89.99775 * 16 15 14 27 27 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 28 28 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 29 29 H 0.97001 * 119.99858 * 4.99879 * 1 2 3 30 30 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 31 31 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 32 32 H 0.97009 * 120.00281 * 4.79101 * 11 10 9 33 33 H 0.96996 * 120.00344 * 359.97438 * 14 12 11 34 34 H 1.08996 * 109.47160 * 299.99923 * 15 14 12 35 35 H 1.09003 * 109.47395 * 59.99840 * 15 14 12 36 36 H 1.08003 * 119.93981 * 359.97438 * 17 16 15 37 37 H 1.07998 * 119.97363 * 180.25220 * 18 17 16 38 38 H 1.08006 * 120.03339 * 179.74720 * 19 18 17 39 39 H 1.08004 * 126.57980 * 0.02562 * 22 21 20 40 40 H 1.07998 * 125.90515 * 180.02562 * 23 22 21 41 41 H 1.08000 * 125.71795 * 180.29204 * 25 24 23 42 42 H 1.07989 * 120.03005 * 359.97438 * 26 16 15 43 43 H 1.08997 * 117.49622 * 359.97438 * 27 9 7 44 44 H 1.09000 * 117.49928 * 145.02150 * 27 9 7 45 45 H 1.08996 * 117.50254 * 214.97905 * 28 9 7 46 46 H 1.09005 * 117.49689 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2462 2.2511 12 6 2.1054 -3.7588 3.4965 13 8 1.0296 -3.9780 4.0187 14 7 3.2454 -4.0284 4.1629 15 6 3.1882 -4.5851 5.5168 16 6 4.5883 -4.7930 6.0340 17 6 5.2316 -5.9985 5.8206 18 6 6.5183 -6.1910 6.2886 19 6 7.1608 -5.1829 6.9811 20 6 6.5155 -3.9740 7.2018 21 7 7.1650 -2.9491 7.9049 22 6 8.4303 -2.9963 8.4304 23 6 8.6530 -1.8057 9.0187 24 7 7.5570 -1.0488 8.8603 25 6 6.6609 -1.7204 8.1898 26 6 5.2256 -3.7816 6.7256 27 6 1.5731 -3.5804 -0.9271 28 6 0.2453 -2.8219 -0.9976 29 1 -0.4850 0.8369 -0.0732 30 1 0.3751 -2.1615 2.0429 31 1 0.3015 -3.8500 1.4844 32 1 3.0164 -3.0718 1.8343 33 1 4.1037 -3.8539 3.7462 34 1 2.6575 -3.8940 6.1716 35 1 2.6637 -5.5403 5.4951 36 1 4.7295 -6.7898 5.2837 37 1 7.0198 -7.1319 6.1169 38 1 8.1644 -5.3352 7.3500 39 1 9.1168 -3.8287 8.3818 40 1 9.5576 -1.5111 9.5298 41 1 5.6817 -1.3604 7.9105 42 1 4.7213 -2.8420 6.8954 43 1 2.3246 -3.3505 -1.6824 44 1 1.5429 -4.6178 -0.5937 45 1 -0.6578 -3.3606 -0.7106 46 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430702669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:14 Heat of formation + Delta-G solvation = 69.736958 kcal Electronic energy + Delta-G solvation = -27818.022844 eV Core-core repulsion = 23901.853183 eV Total energy + Delta-G solvation = -3916.169661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.31659 -41.08246 -40.20500 -38.53965 -36.27709 -34.98462 -34.77102 -33.94115 -32.47672 -30.94186 -30.07967 -28.41976 -27.44229 -26.19843 -24.62819 -23.41845 -22.92209 -21.80344 -21.79086 -21.33186 -21.22703 -19.63962 -18.97910 -18.06411 -17.27904 -17.09167 -16.83275 -16.60059 -16.49926 -16.18530 -15.78880 -15.66686 -15.31393 -15.11233 -14.95142 -14.64292 -14.50899 -14.38494 -14.02701 -13.92213 -13.67717 -13.50131 -13.33791 -12.91297 -12.86343 -12.63696 -12.33429 -12.15774 -12.00223 -11.73645 -11.46391 -11.26320 -11.15222 -10.93128 -10.44192 -10.30253 -10.07550 -9.99649 -9.75128 -9.59294 -9.30021 -8.08852 -6.22564 -0.18990 0.12109 1.25510 1.40447 1.44987 1.53077 1.64056 1.89658 2.07519 2.25129 2.42229 2.71632 3.19544 3.37069 3.42246 3.64314 3.66955 3.75159 3.79683 4.02600 4.17376 4.21572 4.25774 4.27554 4.48971 4.58248 4.63816 4.65893 4.68960 4.73424 4.76656 4.84581 4.92502 5.01568 5.05103 5.31373 5.31703 5.38872 5.46945 5.47614 5.58383 5.64429 5.66311 5.74124 5.75814 5.80064 6.14028 6.21728 6.38176 6.85327 6.95670 7.22695 7.47104 7.68140 8.98285 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.002475 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.969146 B =11310.691620 C =13019.097601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.947 3.053 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.290 1.290 7 C -0.502 4.502 8 H 0.064 0.936 9 C 0.003 3.997 10 C 0.199 3.801 11 N -0.716 5.716 12 C 0.697 3.303 13 O -0.644 6.644 14 N -0.730 5.730 15 C 0.182 3.818 16 C -0.079 4.079 17 C -0.102 4.102 18 C -0.088 4.088 19 C -0.122 4.122 20 C 0.113 3.887 21 N -0.411 5.411 22 C -0.047 4.047 23 C -0.048 4.048 24 N -0.524 5.524 25 C 0.174 3.826 26 C -0.121 4.121 27 C -0.176 4.176 28 C -0.154 4.154 29 H 0.258 0.742 30 H 0.022 0.978 31 H 0.037 0.963 32 H 0.407 0.593 33 H 0.408 0.592 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.147 0.853 37 H 0.166 0.834 38 H 0.154 0.846 39 H 0.212 0.788 40 H 0.192 0.808 41 H 0.220 0.780 42 H 0.132 0.868 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.637 -14.476 14.267 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.217 1.217 7 C -0.539 4.539 8 H 0.082 0.918 9 C 0.002 3.998 10 C 0.074 3.926 11 N -0.369 5.369 12 C 0.397 3.603 13 O -0.527 6.527 14 N -0.387 5.387 15 C 0.059 3.941 16 C -0.080 4.080 17 C -0.121 4.121 18 C -0.106 4.106 19 C -0.142 4.142 20 C 0.021 3.979 21 N -0.090 5.090 22 C -0.177 4.177 23 C -0.193 4.193 24 N -0.242 5.242 25 C -0.107 4.107 26 C -0.141 4.141 27 C -0.213 4.213 28 C -0.193 4.193 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.242 0.758 33 H 0.244 0.756 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.165 0.835 37 H 0.183 0.817 38 H 0.172 0.828 39 H 0.229 0.771 40 H 0.209 0.791 41 H 0.236 0.764 42 H 0.150 0.850 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.383 -13.786 15.070 26.820 hybrid contribution 0.523 0.927 -0.706 1.277 sum 17.906 -12.859 14.364 26.312 Atomic orbital electron populations 1.70118 1.07196 1.27168 1.50017 1.25686 0.95458 1.01980 0.94518 0.85673 0.79535 0.80333 0.77073 1.18551 1.20999 1.21671 1.20695 0.92931 0.89546 1.50759 0.91835 1.19071 1.00214 0.93912 0.86591 1.20405 0.84227 0.96087 0.91875 1.44927 1.10622 1.66830 1.14490 1.16156 0.84364 0.78437 0.81322 1.90853 1.29827 1.62253 1.69736 1.44946 1.06944 1.69763 1.17047 1.19985 0.93028 0.99491 0.81610 1.19547 0.95109 0.94468 0.98886 1.21481 0.95284 0.96665 0.98649 1.21382 0.94120 0.99612 0.95477 1.21244 1.01506 0.91062 1.00346 1.17970 0.93149 0.88888 0.97928 1.43358 1.13408 1.12054 1.40183 1.23317 0.87499 1.03009 1.03912 1.22843 0.98910 0.91780 1.05771 1.70315 1.02807 1.33040 1.18049 1.25619 1.01727 0.82274 1.01110 1.20833 0.93135 1.00428 0.99708 1.22992 0.98792 0.95938 1.03539 1.22396 0.92189 1.01838 1.02853 0.93258 0.95949 0.94480 0.75797 0.75582 0.91820 0.90383 0.83522 0.81696 0.82841 0.77091 0.79076 0.76351 0.85020 0.89715 0.89308 0.91225 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.14 12.65 21.45 0.27 -50.87 16 2 C 0.02 1.28 5.43 84.66 0.46 1.74 16 3 Si 0.95 42.22 29.54 68.60 2.03 44.25 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.50 -25.27 8.59 25.60 0.22 -25.05 16 8 H 0.06 3.08 7.82 -2.91 -0.02 3.06 16 9 C 0.00 0.13 1.47 -52.93 -0.08 0.06 16 10 C 0.20 9.00 5.50 86.38 0.48 9.48 16 11 N -0.72 -26.61 5.48 -478.54 -2.62 -29.23 16 12 C 0.70 25.00 8.57 179.05 1.53 26.54 16 13 O -0.64 -28.70 16.34 -3.96 -0.06 -28.76 16 14 N -0.73 -18.04 5.55 -482.31 -2.68 -20.72 16 15 C 0.18 3.78 5.80 85.63 0.50 4.28 16 16 C -0.08 -1.19 5.25 -19.88 -0.10 -1.30 16 17 C -0.10 -1.13 9.70 22.29 0.22 -0.91 16 18 C -0.09 -0.71 10.04 22.25 0.22 -0.48 16 19 C -0.12 -1.21 9.47 22.38 0.21 -1.00 16 20 C 0.11 1.67 6.63 38.07 0.25 1.92 16 21 N -0.41 -7.03 2.99 -350.39 -1.05 -8.08 16 22 C -0.05 -0.67 10.86 83.05 0.90 0.23 16 23 C -0.05 -0.87 11.85 83.52 0.99 0.12 16 24 N -0.52 -12.62 11.25 -199.72 -2.25 -14.86 16 25 C 0.17 3.55 11.91 180.01 2.14 5.69 16 26 C -0.12 -1.91 9.12 22.38 0.20 -1.71 16 27 C -0.18 -6.85 9.96 30.62 0.30 -6.55 16 28 C -0.15 -7.00 9.14 30.62 0.28 -6.72 16 29 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 30 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 1.66 8.09 -2.39 -0.02 1.64 16 32 H 0.41 13.40 8.35 -92.70 -0.77 12.63 16 33 H 0.41 8.09 8.48 -92.71 -0.79 7.31 16 34 H 0.06 1.48 8.08 -2.39 -0.02 1.46 16 35 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 36 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.17 0.37 8.06 -2.91 -0.02 0.34 16 38 H 0.15 0.77 6.82 -2.91 -0.02 0.75 16 39 H 0.21 1.24 7.15 -2.91 -0.02 1.22 16 40 H 0.19 2.42 8.06 -2.91 -0.02 2.39 16 41 H 0.22 3.54 7.07 -2.91 -0.02 3.52 16 42 H 0.13 2.07 6.77 -2.92 -0.02 2.05 16 43 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 44 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.06 3.19 8.14 -2.38 -0.02 3.17 16 Total: -1.00 -72.38 394.33 1.83 -70.55 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: -0.54 Total: 31.39 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 8.73 Total: 6.34 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -8.33 Total: -123.76 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.06 Total: -28.76 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -72.38 1.83 -70.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430702669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.285 kcal (2) G-P(sol) polarization free energy of solvation -72.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds