Wall clock time and date at job start Sat Apr 11 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00265 * 2 1 4 4 H 1.48499 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46833 * 300.00024 * 3 2 1 6 6 H 1.48498 * 109.46933 * 59.99708 * 3 2 1 7 7 C 1.37882 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99756 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00219 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47197 * 180.02562 * 9 7 2 11 11 C 1.46509 * 119.99636 * 264.87983 * 10 9 7 12 12 C 1.50701 * 109.47041 * 269.99861 * 11 10 9 13 13 C 1.38673 * 120.41892 * 269.72227 * 12 11 10 14 14 C 1.38628 * 118.41795 * 179.78484 * 13 12 11 15 15 C 1.38230 * 119.16041 * 0.51583 * 14 13 12 16 16 N 1.31845 * 120.76449 * 359.72204 * 15 14 13 17 17 C 1.31886 * 121.72887 * 0.02562 * 16 15 14 18 18 C 1.34772 * 120.00368 * 84.88496 * 10 9 7 19 19 O 1.21280 * 120.00339 * 185.31184 * 18 10 9 20 20 C 1.50704 * 119.99924 * 5.30112 * 18 10 9 21 21 H 1.09003 * 109.52317 * 331.37419 * 20 18 10 22 22 C 1.53122 * 109.49436 * 91.45162 * 20 18 10 23 23 C 1.53281 * 109.70208 * 189.86517 * 22 20 18 24 24 N 1.46471 * 108.69131 * 309.22449 * 23 22 20 25 25 C 1.34404 * 128.44242 * 197.36445 * 24 23 22 26 26 N 1.30785 * 108.55522 * 179.77459 * 25 24 23 27 27 C 1.34427 * 109.31862 * 0.06374 * 26 25 24 28 28 C 1.33866 * 107.79781 * 0.02562 * 27 26 25 29 29 C 1.50708 * 128.67970 * 179.90278 * 28 27 26 30 30 H 0.96998 * 119.99743 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47121 * 59.99318 * 9 7 2 32 32 H 1.09006 * 109.47069 * 300.00055 * 9 7 2 33 33 H 1.08999 * 109.47347 * 30.00196 * 11 10 9 34 34 H 1.09004 * 109.46881 * 150.00474 * 11 10 9 35 35 H 1.07995 * 120.79357 * 0.02562 * 13 12 11 36 36 H 1.07999 * 120.42222 * 180.22125 * 14 13 12 37 37 H 1.08003 * 119.61464 * 179.75119 * 15 14 13 38 38 H 1.07995 * 119.61988 * 180.02562 * 17 16 15 39 39 H 1.09000 * 109.43001 * 309.93421 * 22 20 18 40 40 H 1.08994 * 109.43216 * 69.79316 * 22 20 18 41 41 H 1.09001 * 109.59934 * 189.46595 * 23 22 20 42 42 H 1.08992 * 109.73231 * 69.06897 * 23 22 20 43 43 H 1.08005 * 125.72586 * 359.77115 * 25 24 23 44 44 H 1.08001 * 126.10420 * 180.02562 * 27 26 25 45 45 H 1.09004 * 109.74364 * 76.04982 * 29 28 27 46 46 H 1.09002 * 109.79073 * 315.35336 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.5939 -4.2436 -1.2614 12 6 1.6522 -5.3794 -1.5681 13 6 1.9295 -6.6620 -1.1196 14 6 1.0325 -7.6749 -1.4216 15 6 -0.0950 -7.3769 -2.1638 16 7 -0.3240 -6.1464 -2.5780 17 6 0.5047 -5.1572 -2.3052 18 6 2.7191 -4.0568 1.1648 19 8 3.5785 -4.9126 1.1595 20 6 2.2286 -3.4898 2.4721 21 1 1.8888 -2.4653 2.3202 22 6 1.0681 -4.3409 2.9949 23 6 0.4068 -3.6377 4.1856 24 7 1.4469 -3.2642 5.1469 25 6 1.3072 -2.9279 6.4406 26 7 2.4908 -2.6710 6.9341 27 6 3.4177 -2.8334 5.9740 28 6 2.7854 -3.2016 4.8530 29 6 3.3707 -3.5041 3.4975 30 1 -0.4850 0.8400 0.0004 31 1 0.6247 -2.5571 -0.8896 32 1 0.6240 -2.5567 0.8903 33 1 2.5492 -3.5077 -2.0642 34 1 3.6106 -4.6274 -1.1765 35 1 2.8210 -6.8662 -0.5452 36 1 1.2146 -8.6849 -1.0854 37 1 -0.7967 -8.1612 -2.4067 38 1 0.2834 -4.1620 -2.6613 39 1 0.3334 -4.4788 2.2015 40 1 1.4454 -5.3131 3.3118 41 1 -0.3043 -4.3135 4.6605 42 1 -0.1124 -2.7429 3.8425 43 1 0.3740 -2.8782 6.9821 44 1 4.4824 -2.6921 6.0869 45 1 3.8413 -4.4872 3.5107 46 1 4.1091 -2.7459 3.2368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533527659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:38 Heat of formation + Delta-G solvation = 56.203776 kcal Electronic energy + Delta-G solvation = -30016.527257 eV Core-core repulsion = 26099.770753 eV Total energy + Delta-G solvation = -3916.756504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.14025 -40.21280 -39.29975 -36.14445 -35.37923 -33.27790 -32.70506 -32.21219 -31.42459 -30.31649 -28.00540 -27.60151 -26.17733 -24.30074 -23.54900 -23.08686 -22.61318 -21.63359 -21.19886 -19.11720 -18.26851 -17.11835 -17.00257 -16.85740 -16.48387 -15.96038 -15.79454 -15.33973 -15.17581 -14.55660 -14.46394 -13.95402 -13.82846 -13.74826 -13.51957 -13.42878 -13.14797 -13.01224 -12.89290 -12.73567 -12.44036 -12.00982 -11.88498 -11.81015 -11.59558 -11.28978 -11.08883 -10.96529 -10.84621 -10.63140 -10.26455 -9.93159 -9.78846 -9.70556 -9.35370 -9.33188 -9.26519 -8.84456 -8.67767 -8.11340 -7.95937 -6.32248 -4.40627 1.19650 1.41657 2.26637 2.94558 3.11229 3.14687 3.24624 3.28259 3.34838 3.62077 4.06602 4.22918 4.55606 4.57093 4.73798 4.79280 4.83365 4.93272 5.01574 5.03228 5.07298 5.13787 5.19538 5.26950 5.34441 5.43333 5.54430 5.62663 5.69983 5.76722 5.80252 5.88424 5.95066 6.02476 6.06977 6.14418 6.24582 6.40609 6.46443 6.54527 6.58363 6.83175 6.93124 6.98308 7.31347 7.39250 7.62945 7.88907 8.07852 8.09875 8.24018 8.62924 8.79248 9.28962 10.74123 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007773 B = 0.004889 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3601.355162 B = 5725.681271 C = 8125.593868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.238 3.762 10 N -0.589 5.589 11 C 0.158 3.842 12 C -0.145 4.145 13 C -0.058 4.058 14 C -0.181 4.181 15 C 0.090 3.910 16 N -0.488 5.488 17 C 0.115 3.885 18 C 0.530 3.470 19 O -0.569 6.569 20 C -0.113 4.113 21 H 0.121 0.879 22 C -0.115 4.115 23 C 0.106 3.894 24 N -0.453 5.453 25 C 0.176 3.824 26 N -0.500 5.500 27 C -0.033 4.033 28 C -0.007 4.007 29 C -0.029 4.029 30 H 0.266 0.734 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.201 0.799 44 H 0.167 0.833 45 H 0.091 0.909 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.368 -10.847 2.225 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.118 3.882 10 N -0.318 5.318 11 C 0.034 3.966 12 C -0.148 4.148 13 C -0.084 4.084 14 C -0.201 4.201 15 C -0.067 4.067 16 N -0.197 5.197 17 C -0.042 4.042 18 C 0.318 3.682 19 O -0.450 6.450 20 C -0.135 4.135 21 H 0.139 0.861 22 C -0.153 4.153 23 C -0.016 4.016 24 N -0.137 5.137 25 C -0.106 4.106 26 N -0.219 5.219 27 C -0.180 4.180 28 C -0.122 4.122 29 C -0.068 4.068 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.167 0.833 38 H 0.175 0.825 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.218 0.782 44 H 0.184 0.816 45 H 0.110 0.890 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.834 -10.761 2.439 11.066 hybrid contribution 0.707 0.708 -0.352 1.061 sum -0.127 -10.053 2.087 10.268 Atomic orbital electron populations 1.69918 1.05984 1.27414 1.49255 1.24923 0.94844 0.99321 0.94454 0.86487 0.80266 0.83219 0.77875 1.19534 1.20742 1.20761 1.21508 0.93707 0.90266 1.52597 0.91895 1.19482 0.87501 0.82476 0.98701 1.48249 1.45314 1.34010 1.04241 1.20155 0.96504 0.92277 0.87650 1.21432 0.98295 0.96088 0.99017 1.21652 0.98972 0.92117 0.95688 1.22111 0.96413 1.00333 1.01202 1.22708 0.95637 0.93978 0.94387 1.67708 1.30747 1.00466 1.20756 1.22814 0.89363 0.98175 0.93893 1.20191 0.81137 0.81362 0.85502 1.90574 1.32503 1.34091 1.87810 1.21434 0.96089 1.03249 0.92705 0.86126 1.21693 0.97879 0.98850 0.96927 1.22008 0.89209 1.01312 0.89080 1.45429 1.07286 1.50410 1.10540 1.24681 0.99030 1.04750 0.82177 1.70444 0.98608 1.21118 1.31695 1.21754 0.99252 1.07912 0.89055 1.21213 0.83542 1.08984 0.98460 1.20092 0.96527 1.03550 0.86626 0.92440 0.94391 0.94618 0.89061 0.89598 0.84556 0.85244 0.83261 0.82524 0.89283 0.90717 0.89043 0.88807 0.78207 0.81586 0.89028 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.90 13.29 55.43 0.74 -22.17 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -12.91 8.77 -34.44 -0.30 -13.22 16 8 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.24 5.00 4.79 -5.20 -0.02 4.98 16 10 N -0.59 -10.78 2.45 -176.43 -0.43 -11.21 16 11 C 0.16 2.56 5.58 -5.19 -0.03 2.53 16 12 C -0.15 -2.17 5.48 -104.48 -0.57 -2.75 16 13 C -0.06 -0.80 9.86 -39.28 -0.39 -1.19 16 14 C -0.18 -2.16 10.11 -39.44 -0.40 -2.56 16 15 C 0.09 1.13 11.18 -17.55 -0.20 0.94 16 16 N -0.49 -7.40 10.36 -13.25 -0.14 -7.53 16 17 C 0.11 1.75 10.86 -17.55 -0.19 1.56 16 18 C 0.53 9.58 6.65 -10.99 -0.07 9.51 16 19 O -0.57 -10.98 15.46 5.56 0.09 -10.90 16 20 C -0.11 -1.86 1.74 -91.45 -0.16 -2.01 16 21 H 0.12 2.28 5.93 -51.93 -0.31 1.98 16 22 C -0.12 -1.57 5.05 -26.52 -0.13 -1.71 16 23 C 0.11 1.28 7.00 -3.91 -0.03 1.25 16 24 N -0.45 -6.41 3.13 -114.09 -0.36 -6.77 16 25 C 0.18 2.43 12.66 -90.72 -1.15 1.28 16 26 N -0.50 -8.16 11.27 -14.87 -0.17 -8.33 16 27 C -0.03 -0.52 11.84 -17.95 -0.21 -0.73 16 28 C -0.01 -0.11 6.57 -81.73 -0.54 -0.65 16 29 C -0.03 -0.45 5.42 -27.63 -0.15 -0.60 16 30 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.04 0.84 8.03 -51.93 -0.42 0.43 16 32 H 0.04 0.78 6.26 -51.93 -0.33 0.45 16 33 H 0.09 1.43 8.02 -51.93 -0.42 1.02 16 34 H 0.09 1.38 7.31 -51.93 -0.38 1.00 16 35 H 0.14 1.90 7.98 -52.49 -0.42 1.48 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.15 1.41 8.06 -52.48 -0.42 0.99 16 38 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.09 1.22 7.93 -51.93 -0.41 0.81 16 40 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.20 1.96 8.06 -52.48 -0.42 1.54 16 44 H 0.17 2.25 8.06 -52.49 -0.42 1.83 16 45 H 0.09 1.42 7.47 -51.93 -0.39 1.03 16 46 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -29.55 383.74 -10.56 -40.12 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.41 Total: 8.05 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -4.64 Total: -1.76 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.36 Total: -56.01 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.55 -10.56 -40.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533527659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.323 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds