Wall clock time and date at job start Sat Apr 11 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99827 * 2 1 4 4 H 1.48491 * 109.47163 * 269.99720 * 3 2 1 5 5 H 1.48502 * 109.46931 * 29.99918 * 3 2 1 6 6 H 1.48500 * 109.46949 * 149.99673 * 3 2 1 7 7 C 1.37872 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99553 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00459 * 0.02562 * 7 2 1 10 10 C 1.53079 * 109.44942 * 59.79090 * 9 7 2 11 11 C 1.53194 * 109.29393 * 181.24645 * 10 9 7 12 12 N 1.46927 * 108.89299 * 305.57448 * 11 10 9 13 13 C 1.34774 * 120.63281 * 233.51987 * 12 11 10 14 14 O 1.21615 * 119.99757 * 0.62289 * 13 12 11 15 15 C 1.47239 * 119.99984 * 180.62829 * 13 12 11 16 16 C 1.37003 * 127.18714 * 25.54998 * 15 13 12 17 17 N 1.33322 * 106.36879 * 179.84338 * 16 15 13 18 18 N 1.28508 * 109.43826 * 0.43713 * 17 16 15 19 19 N 1.28714 * 110.64177 * 359.71766 * 18 17 16 20 20 C 1.46501 * 126.03818 * 180.02562 * 19 18 17 21 21 C 1.50691 * 109.47163 * 274.49174 * 20 19 18 22 22 C 1.38244 * 120.00231 * 263.45127 * 21 20 19 23 23 C 1.38233 * 120.00004 * 179.76701 * 22 21 20 24 24 C 1.38230 * 120.00227 * 0.50934 * 23 22 21 25 25 C 1.38240 * 120.00096 * 359.74464 * 24 23 22 26 26 C 1.38237 * 119.99742 * 359.97438 * 25 24 23 27 27 C 1.46935 * 118.73691 * 53.53886 * 12 11 10 28 28 C 1.53043 * 109.46275 * 180.02562 * 9 7 2 29 29 H 0.96998 * 120.00380 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.45149 * 299.96991 * 9 7 2 31 31 H 1.08997 * 109.39357 * 61.36527 * 10 9 7 32 32 H 1.09004 * 109.62148 * 301.25796 * 10 9 7 33 33 H 1.08997 * 109.58756 * 185.71846 * 11 10 9 34 34 H 1.08997 * 109.58889 * 65.43312 * 11 10 9 35 35 H 1.07999 * 126.81579 * 359.97438 * 16 15 13 36 36 H 1.09000 * 109.46982 * 34.49415 * 20 19 18 37 37 H 1.09001 * 109.46917 * 154.49120 * 20 19 18 38 38 H 1.07999 * 119.99135 * 359.97438 * 22 21 20 39 39 H 1.08005 * 119.99336 * 180.23135 * 23 22 21 40 40 H 1.07998 * 120.00102 * 179.72845 * 24 23 22 41 41 H 1.08002 * 120.00251 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.99792 * 179.97438 * 26 25 24 43 43 H 1.08994 * 109.58274 * 66.17665 * 27 12 11 44 44 H 1.08992 * 109.58356 * 186.46192 * 27 12 11 45 45 H 1.08999 * 109.49402 * 58.66562 * 28 9 7 46 46 H 1.09001 * 109.52257 * 298.58470 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.3678 -2.5778 -1.2472 11 6 -0.4197 -3.8917 -1.2279 12 7 0.5228 -5.0091 -1.0812 13 6 0.5124 -6.0356 -1.9546 14 8 -0.2749 -6.0371 -2.8815 15 6 1.4539 -7.1550 -1.7863 16 6 2.0407 -7.5756 -0.6220 17 7 2.8100 -8.6159 -0.9434 18 7 2.7284 -8.8339 -2.2073 19 7 1.9309 -7.9899 -2.7627 20 6 1.5925 -7.9324 -4.1869 21 6 2.6298 -7.1193 -4.9172 22 6 2.4013 -5.7811 -5.1783 23 6 3.3550 -5.0341 -5.8441 24 6 4.5327 -5.6276 -6.2580 25 6 4.7592 -6.9670 -6.0016 26 6 3.8079 -7.7127 -5.3307 27 6 1.4769 -4.9866 0.0361 28 6 2.2459 -3.6622 0.0018 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5566 0.8907 31 1 0.9953 -2.5427 -2.1377 32 1 -0.3266 -1.7376 -1.2576 33 1 -0.9725 -4.0001 -2.1610 34 1 -1.1158 -3.8882 -0.3891 35 1 1.9052 -7.1504 0.3615 36 1 1.5686 -8.9426 -4.5957 37 1 0.6141 -7.4677 -4.3094 38 1 1.4789 -5.3187 -4.8592 39 1 3.1779 -3.9877 -6.0447 40 1 5.2760 -5.0450 -6.7820 41 1 5.6792 -7.4308 -6.3254 42 1 3.9847 -8.7592 -5.1308 43 1 0.9370 -5.0709 0.9792 44 1 2.1737 -5.8189 -0.0617 45 1 2.8877 -3.5909 0.8799 46 1 2.8569 -3.6199 -0.8998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556963624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:53 Heat of formation + Delta-G solvation = 86.431940 kcal Electronic energy + Delta-G solvation = -29999.766014 eV Core-core repulsion = 26084.320302 eV Total energy + Delta-G solvation = -3915.445712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.48817 -41.06034 -40.30099 -38.52936 -36.22880 -35.43083 -33.47569 -32.71741 -32.55126 -31.93912 -31.24492 -28.42639 -27.96480 -25.74686 -24.60434 -24.04531 -23.53348 -23.34714 -22.53854 -21.44009 -20.29047 -18.71237 -18.48413 -18.12166 -18.08251 -17.23148 -17.08343 -16.53839 -16.43930 -16.22920 -15.87042 -15.53790 -15.17919 -14.78915 -14.60821 -14.45601 -14.36975 -14.24341 -13.94068 -13.83053 -13.62254 -13.45299 -13.06059 -12.94197 -12.78479 -12.47460 -12.41403 -12.29498 -12.16916 -12.00740 -11.95667 -11.43272 -11.33166 -11.28466 -10.97446 -10.84164 -10.46802 -10.39010 -9.97798 -9.96489 -9.66732 -8.07323 -6.20049 -0.18948 0.05472 0.36052 1.06562 1.18022 1.40957 1.43879 1.51891 1.81281 1.97493 2.44369 2.76465 3.10850 3.20017 3.28312 3.43943 3.56275 3.80430 3.94382 3.99142 4.04104 4.17177 4.23775 4.29292 4.29397 4.39168 4.48286 4.49041 4.58052 4.63574 4.70755 4.82806 4.84818 4.89736 4.96349 5.01620 5.13528 5.21582 5.26504 5.40543 5.41160 5.45632 5.48918 5.49407 5.66010 5.94027 5.99489 6.11149 6.27386 6.39726 6.83635 6.90681 7.20936 7.48078 8.95977 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011509 B = 0.003636 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.270450 B = 7699.780524 C = 8928.593863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.944 3.056 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.110 4.110 11 C 0.123 3.877 12 N -0.578 5.578 13 C 0.591 3.409 14 O -0.568 6.568 15 C -0.071 4.071 16 C -0.004 4.004 17 N -0.291 5.291 18 N -0.065 5.065 19 N -0.246 5.246 20 C 0.145 3.855 21 C -0.132 4.132 22 C -0.107 4.107 23 C -0.136 4.136 24 C -0.106 4.106 25 C -0.126 4.126 26 C -0.095 4.095 27 C 0.079 3.921 28 C -0.115 4.115 29 H 0.260 0.740 30 H 0.010 0.990 31 H 0.021 0.979 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.143 0.857 43 H 0.096 0.904 44 H 0.117 0.883 45 H 0.075 0.925 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.266 -15.484 -8.695 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.771 3.229 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.570 4.570 8 H 0.067 0.933 9 C 0.026 3.974 10 C -0.149 4.149 11 C 0.002 3.998 12 N -0.308 5.308 13 C 0.377 3.623 14 O -0.448 6.448 15 C -0.205 4.205 16 C -0.163 4.163 17 N -0.153 5.153 18 N -0.046 5.046 19 N -0.042 5.042 20 C 0.026 3.974 21 C -0.133 4.133 22 C -0.126 4.126 23 C -0.154 4.154 24 C -0.124 4.124 25 C -0.144 4.144 26 C -0.113 4.113 27 C -0.042 4.042 28 C -0.153 4.153 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.040 0.960 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.253 0.747 36 H 0.161 0.839 37 H 0.141 0.859 38 H 0.128 0.872 39 H 0.148 0.852 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.160 0.840 43 H 0.114 0.886 44 H 0.134 0.866 45 H 0.094 0.906 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.612 -16.576 -9.407 19.868 hybrid contribution -0.613 2.446 0.083 2.523 sum 4.999 -14.129 -9.324 17.651 Atomic orbital electron populations 1.69945 1.06846 1.27040 1.51395 1.25610 0.95592 1.01890 0.94987 0.85767 0.78958 0.80233 0.77954 1.20680 1.21010 1.19435 1.21558 0.92953 0.92229 1.50232 0.93273 1.18633 0.93073 0.92251 0.93407 1.21780 0.99325 0.95471 0.98332 1.21718 0.91001 0.84857 1.02234 1.47928 1.35559 1.19469 1.27863 1.16843 0.82204 0.81085 0.82129 1.90726 1.41727 1.79430 1.32940 1.21934 1.07132 1.00492 0.90941 1.24728 0.96063 0.95165 1.00373 1.74898 1.20356 1.15864 1.04231 1.78142 1.09800 1.13325 1.03287 1.47992 1.27512 1.18782 1.09964 1.21456 0.99221 1.04641 0.72084 1.19782 0.96893 0.94458 1.02208 1.21232 0.99618 0.93755 0.97972 1.21413 0.94515 1.00629 0.98819 1.21603 0.96908 0.95617 0.98313 1.21528 1.00020 0.94251 0.98577 1.21355 0.92357 1.01121 0.96498 1.22813 0.92210 0.99976 0.89189 1.21849 0.98215 0.94128 1.01104 0.93041 0.97140 0.96020 0.90479 0.90430 0.90746 0.74742 0.83904 0.85883 0.87230 0.85157 0.83419 0.82952 0.83955 0.88571 0.86598 0.90627 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.87 11.30 21.45 0.24 -49.63 16 2 C 0.02 0.96 5.30 84.65 0.45 1.40 16 3 Si 0.94 42.11 29.54 68.60 2.03 44.13 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.53 -27.59 8.56 25.60 0.22 -27.37 16 8 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 9 C 0.04 2.03 2.06 -11.50 -0.02 2.01 16 10 C -0.11 -4.87 5.16 30.69 0.16 -4.71 16 11 C 0.12 4.48 6.43 86.36 0.56 5.03 16 12 N -0.58 -18.47 2.97 -823.01 -2.45 -20.92 16 13 C 0.59 18.78 7.59 86.61 0.66 19.44 16 14 O -0.57 -20.13 14.48 -4.08 -0.06 -20.19 16 15 C -0.07 -1.98 6.61 40.41 0.27 -1.72 16 16 C 0.00 -0.10 9.78 84.18 0.82 0.72 16 17 N -0.29 -8.15 12.35 -57.50 -0.71 -8.86 16 18 N -0.07 -1.80 13.14 37.02 0.49 -1.32 16 19 N -0.25 -6.47 3.38 -339.15 -1.15 -7.61 16 20 C 0.14 3.17 6.36 85.63 0.54 3.71 16 21 C -0.13 -3.02 5.46 -19.87 -0.11 -3.12 16 22 C -0.11 -2.76 9.68 22.27 0.22 -2.55 16 23 C -0.14 -3.13 10.05 22.27 0.22 -2.91 16 24 C -0.11 -1.99 10.05 22.27 0.22 -1.77 16 25 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 26 C -0.09 -1.83 9.73 22.27 0.22 -1.62 16 27 C 0.08 2.21 5.47 86.36 0.47 2.68 16 28 C -0.11 -4.12 5.31 30.67 0.16 -3.96 16 29 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.02 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.08 3.88 6.03 -2.38 -0.01 3.87 16 33 H 0.08 2.84 7.00 -2.39 -0.02 2.82 16 34 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.24 4.30 5.83 -2.91 -0.02 4.28 16 36 H 0.14 2.23 8.12 -2.39 -0.02 2.21 16 37 H 0.12 2.96 6.06 -2.39 -0.01 2.95 16 38 H 0.11 3.20 8.06 -2.91 -0.02 3.18 16 39 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 40 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 43 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.12 2.71 3.36 -2.39 -0.01 2.70 16 45 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -63.83 373.72 4.68 -59.16 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 1.00 Total: 21.92 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 5.28 Total: -16.68 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -3.57 Total: -88.34 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.06 Total: -20.19 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -63.83 4.68 -59.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556963624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.587 kcal (2) G-P(sol) polarization free energy of solvation -63.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds