Wall clock time and date at job start Sat Apr 11 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99621 * 2 1 4 4 H 1.48505 * 109.46832 * 239.99676 * 3 2 1 5 5 H 1.48497 * 109.47546 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47059 * 120.00068 * 3 2 1 7 7 C 1.37877 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00172 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99821 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.42976 * 57.45927 * 9 7 2 11 11 C 1.54889 * 110.49072 * 294.77736 * 9 7 2 12 12 C 1.54880 * 102.74700 * 203.38034 * 11 9 7 13 13 C 1.54268 * 104.19976 * 37.93895 * 12 11 9 14 14 H 1.09002 * 110.07072 * 217.08358 * 13 12 11 15 15 N 1.46500 * 110.03278 * 95.67474 * 13 12 11 16 16 C 1.34779 * 119.99827 * 87.83168 * 15 13 12 17 17 O 1.21620 * 120.00251 * 355.21694 * 16 15 13 18 18 C 1.47237 * 119.99643 * 175.21234 * 16 15 13 19 19 C 1.37009 * 127.18959 * 0.38642 * 18 16 15 20 20 N 1.33322 * 106.36845 * 180.27077 * 19 18 16 21 21 N 1.28510 * 109.44153 * 359.73723 * 20 19 18 22 22 N 1.28712 * 110.63903 * 359.97438 * 21 20 19 23 23 C 1.46498 * 126.03637 * 179.97438 * 22 21 20 24 24 C 1.50700 * 109.46982 * 84.41911 * 23 22 21 25 25 C 1.38240 * 119.99716 * 268.62255 * 24 23 22 26 26 C 1.38242 * 119.99692 * 179.76247 * 25 24 23 27 27 C 1.38231 * 120.00117 * 0.51154 * 26 25 24 28 28 C 1.38238 * 120.00122 * 359.73735 * 27 26 25 29 29 C 1.38234 * 119.99990 * 0.02562 * 28 27 26 30 30 C 1.53873 * 106.59451 * 336.38933 * 13 12 11 31 31 H 0.97005 * 120.00347 * 0.02562 * 1 2 3 32 32 H 1.09005 * 110.75088 * 321.69220 * 11 9 7 33 33 H 1.08999 * 110.75826 * 85.05944 * 11 9 7 34 34 H 1.09004 * 110.48517 * 279.26032 * 12 11 9 35 35 H 1.09001 * 110.48849 * 156.61932 * 12 11 9 36 36 H 0.96999 * 119.99929 * 267.83722 * 15 13 12 37 37 H 1.07993 * 126.81440 * 359.97438 * 19 18 16 38 38 H 1.08996 * 109.47592 * 324.41675 * 23 22 21 39 39 H 1.09006 * 109.47530 * 204.41182 * 23 22 21 40 40 H 1.07993 * 119.99792 * 359.97438 * 25 24 23 41 41 H 1.08000 * 119.99705 * 180.22915 * 26 25 24 42 42 H 1.07997 * 120.00179 * 179.72576 * 27 26 25 43 43 H 1.08000 * 120.00400 * 179.97438 * 28 27 26 44 44 H 1.07996 * 120.00419 * 179.97438 * 29 28 27 45 45 H 1.09006 * 110.02730 * 119.28558 * 30 13 12 46 46 H 1.09001 * 110.02935 * 240.71054 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5853 -2.5541 -0.8608 11 6 0.4529 -2.6644 1.3176 12 6 0.2750 -4.1996 1.4190 13 6 1.6120 -4.7704 0.9030 14 1 1.4338 -5.6791 0.3281 15 7 2.5037 -5.0566 2.0297 16 6 2.4485 -6.2542 2.6454 17 8 1.6009 -7.0649 2.3237 18 6 3.4144 -6.5811 3.7074 19 6 4.4181 -5.7822 4.1886 20 7 5.0395 -6.4879 5.1338 21 7 4.4761 -7.6370 5.2497 22 7 3.4950 -7.7467 4.4237 23 6 2.6235 -8.9143 4.2707 24 6 1.5163 -8.8517 5.2911 25 6 1.6774 -9.4565 6.5237 26 6 0.6636 -9.3950 7.4616 27 6 -0.5152 -8.7378 7.1630 28 6 -0.6783 -8.1374 5.9285 29 6 0.3373 -8.1947 4.9925 30 6 2.2326 -3.6892 0.0011 31 1 -0.4851 0.8401 -0.0004 32 1 1.0235 -2.2848 2.1652 33 1 -0.5146 -2.1671 1.2480 34 1 -0.5500 -4.5305 0.7881 35 1 0.1076 -4.4967 2.4543 36 1 3.1337 -4.3841 2.3325 37 1 4.6610 -4.7816 3.8631 38 1 3.2050 -9.8239 4.4208 39 1 2.1943 -8.9186 3.2688 40 1 2.5965 -9.9741 6.7552 41 1 0.7910 -9.8643 8.4259 42 1 -1.3089 -8.6935 7.8940 43 1 -1.5995 -7.6243 5.6950 44 1 0.2098 -7.7260 4.0279 45 1 3.1972 -3.3774 0.4017 46 1 2.3548 -4.0729 -1.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562753093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:00 Heat of formation + Delta-G solvation = 76.265606 kcal Electronic energy + Delta-G solvation = -29065.898616 eV Core-core repulsion = 25150.012058 eV Total energy + Delta-G solvation = -3915.886558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.41938 -39.71087 -39.49057 -37.22587 -35.28988 -33.80248 -32.31966 -31.70088 -31.25816 -31.07352 -28.27326 -27.50780 -27.08020 -24.38422 -23.63500 -22.99436 -22.59311 -21.74314 -20.64759 -19.61600 -19.28997 -18.05439 -17.37302 -16.90384 -16.64459 -16.37349 -15.67218 -15.50062 -15.36304 -14.91798 -14.59863 -14.46112 -14.13518 -13.99391 -13.64122 -13.56551 -12.96996 -12.91407 -12.77641 -12.47226 -12.16470 -11.78688 -11.67841 -11.40940 -11.19828 -11.12454 -11.06492 -10.94196 -10.63917 -10.52510 -10.35212 -10.08350 -9.95277 -9.66746 -9.61492 -9.30805 -9.20663 -9.17807 -8.91645 -8.80599 -8.41426 -6.06667 -4.10215 0.73698 0.92971 1.14381 2.07680 2.20926 3.05497 3.14382 3.27943 3.33699 3.35512 3.57307 4.14082 4.24800 4.34674 4.39052 4.55989 4.72056 4.74098 4.85655 4.91881 5.03278 5.21945 5.24488 5.28874 5.39945 5.49540 5.51875 5.64202 5.67090 5.78946 5.83240 6.10235 6.15192 6.21816 6.23049 6.25987 6.28259 6.45783 6.51811 6.62032 6.69178 6.73922 6.84295 7.13950 7.23625 7.51083 7.63267 7.78545 7.95307 8.08238 8.24175 8.35714 8.92123 9.54439 11.02623 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.002675 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.154634 B =10465.123523 C =11198.913659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.049 3.951 10 H 0.034 0.966 11 C -0.101 4.101 12 C -0.136 4.136 13 C 0.142 3.858 14 H 0.080 0.920 15 N -0.692 5.692 16 C 0.591 3.409 17 O -0.543 6.543 18 C -0.064 4.064 19 C 0.000 4.000 20 N -0.274 5.274 21 N -0.061 5.061 22 N -0.250 5.250 23 C 0.150 3.850 24 C -0.122 4.122 25 C -0.091 4.091 26 C -0.128 4.128 27 C -0.105 4.105 28 C -0.125 4.125 29 C -0.087 4.087 30 C -0.124 4.124 31 H 0.261 0.739 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.404 0.596 37 H 0.199 0.801 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.140 0.860 45 H 0.064 0.936 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 -18.180 10.516 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.030 3.970 10 H 0.052 0.948 11 C -0.139 4.139 12 C -0.174 4.174 13 C 0.039 3.961 14 H 0.098 0.902 15 N -0.342 5.342 16 C 0.375 3.625 17 O -0.421 6.421 18 C -0.198 4.198 19 C -0.160 4.160 20 N -0.137 5.137 21 N -0.041 5.041 22 N -0.047 5.047 23 C 0.030 3.970 24 C -0.124 4.124 25 C -0.110 4.110 26 C -0.146 4.146 27 C -0.124 4.124 28 C -0.143 4.143 29 C -0.105 4.105 30 C -0.162 4.162 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.240 0.760 37 H 0.216 0.784 38 H 0.130 0.870 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.157 0.843 45 H 0.082 0.918 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.848 -19.350 11.338 22.503 hybrid contribution 0.082 1.802 -0.564 1.890 sum 1.930 -17.548 10.775 20.682 Atomic orbital electron populations 1.69938 1.05891 1.26653 1.50122 1.24972 0.94824 0.99029 0.95009 0.86719 0.79652 0.83369 0.78605 1.20320 1.21372 1.20269 1.21114 0.92625 0.90441 1.51307 0.92704 1.19459 0.92401 0.91045 0.94059 0.94825 1.22480 1.01483 0.90346 0.99586 1.22848 0.95555 0.99390 0.99619 1.21923 0.89830 0.98800 0.85527 0.90171 1.46064 1.40165 1.14138 1.33802 1.16713 0.82464 0.83054 0.80286 1.90721 1.37078 1.48950 1.65388 1.22117 1.04429 0.90015 1.03267 1.23946 0.94164 1.01618 0.96312 1.74895 1.22970 0.98820 1.17015 1.78221 0.98749 1.15547 1.11596 1.47818 1.21415 1.12683 1.22761 1.21272 0.88897 0.84786 1.02031 1.19717 0.95214 1.02029 0.95403 1.21120 0.98939 0.98350 0.92561 1.21137 0.93802 1.00280 0.99431 1.21290 0.97523 0.96772 0.96794 1.21249 0.99388 0.99898 0.93781 1.21467 0.92370 0.96240 1.00438 1.22643 1.00546 0.95839 0.97144 0.92963 0.93388 0.91378 0.91779 0.93041 0.76036 0.78431 0.87012 0.84793 0.85636 0.85756 0.85846 0.85569 0.84272 0.91784 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.42 12.29 55.43 0.68 -23.74 16 2 C 0.06 1.68 5.35 -17.82 -0.10 1.58 16 3 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.11 8.46 -34.44 -0.29 -13.40 16 8 H 0.05 1.36 7.54 -52.49 -0.40 0.96 16 9 C 0.05 1.10 2.72 -90.12 -0.25 0.86 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.10 -2.14 5.75 -24.74 -0.14 -2.28 16 12 C -0.14 -2.36 6.54 -25.08 -0.16 -2.53 16 13 C 0.14 2.26 3.21 -66.81 -0.21 2.04 16 14 H 0.08 1.27 7.64 -51.93 -0.40 0.87 16 15 N -0.69 -9.45 5.02 -53.85 -0.27 -9.72 16 16 C 0.59 8.16 7.80 -12.60 -0.10 8.06 16 17 O -0.54 -8.26 12.70 5.26 0.07 -8.20 16 18 C -0.06 -0.83 6.98 -82.33 -0.57 -1.41 16 19 C 0.00 0.00 11.54 -17.35 -0.20 -0.20 16 20 N -0.27 -3.92 12.35 30.47 0.38 -3.55 16 21 N -0.06 -0.84 13.14 60.35 0.79 -0.05 16 22 N -0.25 -3.15 3.38 -58.54 -0.20 -3.35 16 23 C 0.15 1.53 6.17 -5.19 -0.03 1.50 16 24 C -0.12 -1.31 5.46 -104.62 -0.57 -1.88 16 25 C -0.09 -0.87 9.70 -39.58 -0.38 -1.25 16 26 C -0.13 -1.14 10.05 -39.58 -0.40 -1.53 16 27 C -0.11 -0.95 10.05 -39.58 -0.40 -1.35 16 28 C -0.13 -1.29 10.05 -39.58 -0.40 -1.68 16 29 C -0.09 -1.00 9.71 -39.58 -0.38 -1.38 16 30 C -0.12 -2.20 6.13 -25.62 -0.16 -2.36 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16 33 H 0.07 1.61 7.55 -51.93 -0.39 1.22 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.87 8.04 -51.93 -0.42 0.46 16 36 H 0.40 4.88 7.35 -40.82 -0.30 4.58 16 37 H 0.20 1.80 7.55 -52.49 -0.40 1.41 16 38 H 0.11 0.86 8.08 -51.93 -0.42 0.44 16 39 H 0.13 1.42 6.09 -51.93 -0.32 1.10 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.14 1.78 6.24 -52.49 -0.33 1.45 16 45 H 0.06 1.10 7.13 -51.93 -0.37 0.73 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -29.79 381.63 -8.81 -38.61 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.24 Total: 6.09 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -4.75 Total: -17.21 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 1.38 Total: -40.40 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.07 Total: -8.20 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.79 -8.81 -38.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562753093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.871 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds