Wall clock time and date at job start Sat Apr 11 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99621 * 2 1 4 4 H 1.48505 * 109.46832 * 239.99676 * 3 2 1 5 5 H 1.48497 * 109.47546 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47059 * 120.00068 * 3 2 1 7 7 C 1.37877 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00172 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99821 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.42976 * 57.45927 * 9 7 2 11 11 C 1.54889 * 110.49072 * 294.77736 * 9 7 2 12 12 C 1.54880 * 102.74700 * 203.38034 * 11 9 7 13 13 C 1.54268 * 104.19976 * 37.93895 * 12 11 9 14 14 H 1.09002 * 110.07072 * 217.08358 * 13 12 11 15 15 N 1.46500 * 110.03278 * 95.67474 * 13 12 11 16 16 C 1.34779 * 119.99827 * 87.83168 * 15 13 12 17 17 O 1.21620 * 120.00251 * 355.21694 * 16 15 13 18 18 C 1.47237 * 119.99643 * 175.21234 * 16 15 13 19 19 C 1.37009 * 127.18959 * 0.38642 * 18 16 15 20 20 N 1.33322 * 106.36845 * 180.27077 * 19 18 16 21 21 N 1.28510 * 109.44153 * 359.73723 * 20 19 18 22 22 N 1.28712 * 110.63903 * 359.97438 * 21 20 19 23 23 C 1.46498 * 126.03637 * 179.97438 * 22 21 20 24 24 C 1.50700 * 109.46982 * 84.41911 * 23 22 21 25 25 C 1.38240 * 119.99716 * 268.62255 * 24 23 22 26 26 C 1.38242 * 119.99692 * 179.76247 * 25 24 23 27 27 C 1.38231 * 120.00117 * 0.51154 * 26 25 24 28 28 C 1.38238 * 120.00122 * 359.73735 * 27 26 25 29 29 C 1.38234 * 119.99990 * 0.02562 * 28 27 26 30 30 C 1.53873 * 106.59451 * 336.38933 * 13 12 11 31 31 H 0.97005 * 120.00347 * 0.02562 * 1 2 3 32 32 H 1.09005 * 110.75088 * 321.69220 * 11 9 7 33 33 H 1.08999 * 110.75826 * 85.05944 * 11 9 7 34 34 H 1.09004 * 110.48517 * 279.26032 * 12 11 9 35 35 H 1.09001 * 110.48849 * 156.61932 * 12 11 9 36 36 H 0.96999 * 119.99929 * 267.83722 * 15 13 12 37 37 H 1.07993 * 126.81440 * 359.97438 * 19 18 16 38 38 H 1.08996 * 109.47592 * 324.41675 * 23 22 21 39 39 H 1.09006 * 109.47530 * 204.41182 * 23 22 21 40 40 H 1.07993 * 119.99792 * 359.97438 * 25 24 23 41 41 H 1.08000 * 119.99705 * 180.22915 * 26 25 24 42 42 H 1.07997 * 120.00179 * 179.72576 * 27 26 25 43 43 H 1.08000 * 120.00400 * 179.97438 * 28 27 26 44 44 H 1.07996 * 120.00419 * 179.97438 * 29 28 27 45 45 H 1.09006 * 110.02730 * 119.28558 * 30 13 12 46 46 H 1.09001 * 110.02935 * 240.71054 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5853 -2.5541 -0.8608 11 6 0.4529 -2.6644 1.3176 12 6 0.2750 -4.1996 1.4190 13 6 1.6120 -4.7704 0.9030 14 1 1.4338 -5.6791 0.3281 15 7 2.5037 -5.0566 2.0297 16 6 2.4485 -6.2542 2.6454 17 8 1.6009 -7.0649 2.3237 18 6 3.4144 -6.5811 3.7074 19 6 4.4181 -5.7822 4.1886 20 7 5.0395 -6.4879 5.1338 21 7 4.4761 -7.6370 5.2497 22 7 3.4950 -7.7467 4.4237 23 6 2.6235 -8.9143 4.2707 24 6 1.5163 -8.8517 5.2911 25 6 1.6774 -9.4565 6.5237 26 6 0.6636 -9.3950 7.4616 27 6 -0.5152 -8.7378 7.1630 28 6 -0.6783 -8.1374 5.9285 29 6 0.3373 -8.1947 4.9925 30 6 2.2326 -3.6892 0.0011 31 1 -0.4851 0.8401 -0.0004 32 1 1.0235 -2.2848 2.1652 33 1 -0.5146 -2.1671 1.2480 34 1 -0.5500 -4.5305 0.7881 35 1 0.1076 -4.4967 2.4543 36 1 3.1337 -4.3841 2.3325 37 1 4.6610 -4.7816 3.8631 38 1 3.2050 -9.8239 4.4208 39 1 2.1943 -8.9186 3.2688 40 1 2.5965 -9.9741 6.7552 41 1 0.7910 -9.8643 8.4259 42 1 -1.3089 -8.6935 7.8940 43 1 -1.5995 -7.6243 5.6950 44 1 0.2098 -7.7260 4.0279 45 1 3.1972 -3.3774 0.4017 46 1 2.3548 -4.0729 -1.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562753093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:59 Heat of formation + Delta-G solvation = 59.938546 kcal Electronic energy + Delta-G solvation = -29066.606610 eV Core-core repulsion = 25150.012058 eV Total energy + Delta-G solvation = -3916.594552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.40553 -40.89458 -40.24726 -38.66768 -36.21235 -35.23809 -33.95966 -32.52298 -32.35403 -31.87550 -29.92994 -28.86222 -28.06538 -25.97563 -24.91454 -23.86872 -23.41404 -22.64399 -21.76279 -20.96176 -20.88104 -19.11391 -18.48808 -18.22557 -17.88984 -17.26638 -16.92830 -16.59597 -16.32970 -16.18874 -15.95071 -15.62001 -15.36407 -15.21247 -14.60202 -14.37913 -14.31261 -14.01192 -13.73860 -13.56657 -13.52868 -13.18941 -12.91803 -12.73362 -12.53149 -12.43559 -12.39557 -12.30681 -12.13339 -11.94606 -11.63701 -11.41025 -11.30765 -11.11809 -11.03932 -10.77657 -10.63129 -10.40966 -10.04050 -9.94372 -9.92509 -8.06971 -6.15679 -0.20330 0.10384 0.39881 1.16619 1.20287 1.46224 1.46859 1.53492 1.99070 2.07819 2.47640 2.81348 3.24863 3.26125 3.38037 3.50552 3.62585 3.88994 3.97057 4.03584 4.03741 4.09135 4.20170 4.25261 4.28225 4.44907 4.53050 4.66816 4.74962 4.76740 4.91354 4.93451 4.95734 5.02947 5.07325 5.13015 5.23114 5.24870 5.28777 5.44149 5.46244 5.51364 5.52441 5.65471 5.71095 5.95888 5.98117 6.04362 6.40529 6.42297 6.95953 6.99733 7.23593 7.52023 9.01474 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.002675 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.154634 B =10465.123523 C =11198.913659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.039 3.961 10 H 0.001 0.999 11 C -0.091 4.091 12 C -0.124 4.124 13 C 0.158 3.842 14 H 0.089 0.911 15 N -0.687 5.687 16 C 0.597 3.403 17 O -0.557 6.557 18 C -0.075 4.075 19 C 0.008 3.992 20 N -0.299 5.299 21 N -0.069 5.069 22 N -0.244 5.244 23 C 0.146 3.854 24 C -0.131 4.131 25 C -0.097 4.097 26 C -0.130 4.130 27 C -0.108 4.108 28 C -0.139 4.139 29 C -0.107 4.107 30 C -0.112 4.112 31 H 0.258 0.742 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.413 0.587 37 H 0.227 0.773 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.142 0.858 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.133 0.867 44 H 0.121 0.879 45 H 0.075 0.925 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 -19.274 11.757 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.774 3.226 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.563 4.563 8 H 0.079 0.921 9 C 0.021 3.979 10 H 0.019 0.981 11 C -0.130 4.130 12 C -0.163 4.163 13 C 0.054 3.946 14 H 0.107 0.893 15 N -0.338 5.338 16 C 0.382 3.618 17 O -0.436 6.436 18 C -0.210 4.210 19 C -0.153 4.153 20 N -0.161 5.161 21 N -0.050 5.050 22 N -0.041 5.041 23 C 0.027 3.973 24 C -0.132 4.132 25 C -0.115 4.115 26 C -0.148 4.148 27 C -0.126 4.126 28 C -0.157 4.157 29 C -0.126 4.126 30 C -0.150 4.150 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.251 0.749 37 H 0.243 0.757 38 H 0.155 0.845 39 H 0.146 0.854 40 H 0.159 0.841 41 H 0.168 0.832 42 H 0.165 0.835 43 H 0.151 0.849 44 H 0.139 0.861 45 H 0.093 0.907 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.245 -20.457 12.591 24.240 hybrid contribution -0.396 2.100 -0.933 2.332 sum 2.849 -18.357 11.659 21.932 Atomic orbital electron populations 1.70080 1.07265 1.27027 1.51643 1.25725 0.95517 1.02284 0.95174 0.85779 0.78405 0.79568 0.78892 1.19768 1.21825 1.19393 1.21558 0.93120 0.91659 1.49992 0.92148 1.19436 0.93010 0.92229 0.93255 0.98113 1.22241 0.99295 0.92816 0.98617 1.22722 0.96885 0.96448 1.00218 1.21586 0.88926 0.98285 0.85852 0.89339 1.45866 1.40053 1.14518 1.33351 1.16723 0.82258 0.82679 0.80175 1.90730 1.37659 1.49395 1.65792 1.22036 1.04721 0.90621 1.03592 1.24441 0.93199 1.02424 0.95204 1.74883 1.23827 0.99317 1.18045 1.78178 0.99138 1.15674 1.11962 1.48032 1.21048 1.12991 1.22061 1.21462 0.89017 0.85037 1.01743 1.19779 0.94955 1.02430 0.96082 1.21379 0.99865 0.98132 0.92172 1.21508 0.93303 0.99647 1.00296 1.21605 0.98369 0.95988 0.96634 1.21447 0.99494 1.00400 0.94317 1.21432 0.93534 0.97414 1.00188 1.22454 0.99691 0.94387 0.98478 0.93357 0.94159 0.94732 0.91626 0.92397 0.74925 0.75675 0.84498 0.85366 0.84059 0.83213 0.83515 0.84911 0.86107 0.90686 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.92 12.29 21.45 0.26 -51.66 16 2 C 0.01 0.62 5.35 84.66 0.45 1.07 16 3 Si 0.95 41.84 29.54 68.60 2.03 43.87 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.53 -26.62 8.46 25.60 0.22 -26.40 16 8 H 0.06 2.93 7.54 -2.91 -0.02 2.91 16 9 C 0.04 1.79 2.72 -10.47 -0.03 1.76 16 10 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 11 C -0.09 -3.94 5.75 31.88 0.18 -3.76 16 12 C -0.12 -4.27 6.54 31.67 0.21 -4.06 16 13 C 0.16 4.75 3.21 45.72 0.15 4.90 16 14 H 0.09 2.62 7.64 -2.39 -0.02 2.60 16 15 N -0.69 -17.46 5.02 -442.54 -2.22 -19.68 16 16 C 0.60 15.60 7.80 86.61 0.68 16.27 16 17 O -0.56 -16.40 12.70 -4.09 -0.05 -16.45 16 18 C -0.08 -1.84 6.98 40.41 0.28 -1.56 16 19 C 0.01 0.18 11.54 84.18 0.97 1.15 16 20 N -0.30 -8.08 12.35 -57.50 -0.71 -8.79 16 21 N -0.07 -1.82 13.14 37.02 0.49 -1.34 16 22 N -0.24 -5.81 3.38 -339.13 -1.14 -6.96 16 23 C 0.15 2.82 6.17 85.63 0.53 3.35 16 24 C -0.13 -2.68 5.46 -19.86 -0.11 -2.79 16 25 C -0.10 -1.67 9.70 22.27 0.22 -1.45 16 26 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 27 C -0.11 -1.75 10.05 22.27 0.22 -1.52 16 28 C -0.14 -2.76 10.05 22.27 0.22 -2.53 16 29 C -0.11 -2.45 9.71 22.27 0.22 -2.23 16 30 C -0.11 -3.84 6.13 31.31 0.19 -3.64 16 31 H 0.26 14.04 8.31 -92.70 -0.77 13.27 16 32 H 0.04 1.76 8.05 -2.38 -0.02 1.74 16 33 H 0.03 1.69 7.55 -2.39 -0.02 1.67 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.06 1.92 8.04 -2.39 -0.02 1.90 16 36 H 0.41 9.00 7.35 -92.71 -0.68 8.32 16 37 H 0.23 3.49 7.55 -2.91 -0.02 3.47 16 38 H 0.14 1.86 8.08 -2.39 -0.02 1.84 16 39 H 0.13 2.64 6.09 -2.38 -0.01 2.62 16 40 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 41 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.12 3.16 6.24 -2.91 -0.02 3.14 16 45 H 0.07 2.41 7.13 -2.38 -0.02 2.39 16 46 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -64.58 381.63 3.80 -60.78 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.33 Total: 23.43 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 4.82 Total: -23.22 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -3.32 Total: -88.42 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.05 Total: -16.45 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -64.58 3.80 -60.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562753093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.718 kcal (2) G-P(sol) polarization free energy of solvation -64.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds