Wall clock time and date at job start Sat Apr 11 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31361 * 1 3 3 Si 1.86811 * 119.99916 * 2 1 4 4 H 1.48499 * 109.46911 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47306 * 300.00182 * 3 2 1 6 6 H 1.48502 * 109.46952 * 60.00130 * 3 2 1 7 7 C 1.39045 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99928 * 187.82305 * 7 2 1 9 9 N 1.36867 * 119.99950 * 7.82042 * 7 2 1 10 10 C 1.34780 * 119.99796 * 54.47332 * 9 7 2 11 11 O 1.21596 * 120.00050 * 185.88235 * 10 9 7 12 12 C 1.47724 * 120.00046 * 5.87731 * 10 9 7 13 13 C 1.39669 * 120.15067 * 30.95202 * 12 10 9 14 14 C 1.37907 * 119.84820 * 179.97438 * 13 12 10 15 15 C 1.38399 * 120.15088 * 0.02562 * 14 13 12 16 16 C 1.38352 * 120.30709 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.92740 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47071 * 89.99734 * 17 16 15 19 19 C 1.34425 * 126.82019 * 125.00317 * 18 17 16 20 20 N 1.30831 * 108.07708 * 179.73505 * 19 18 17 21 21 C 1.33239 * 109.82875 * 359.97438 * 20 19 18 22 22 N 1.30712 * 108.94528 * 0.02562 * 21 20 19 23 23 C 1.37959 * 120.14988 * 0.27272 * 16 15 14 24 24 C 1.46505 * 120.00415 * 234.47111 * 9 7 2 25 25 C 1.54264 * 110.02863 * 53.52051 * 24 9 7 26 26 C 1.54970 * 104.15769 * 217.13932 * 25 24 9 27 27 C 1.54893 * 102.77819 * 37.88840 * 26 25 24 28 28 C 1.53873 * 110.03052 * 296.30645 * 24 9 7 29 29 H 0.97003 * 120.00193 * 4.98716 * 1 2 3 30 30 H 1.08005 * 120.07259 * 359.95242 * 13 12 10 31 31 H 1.07997 * 119.92570 * 179.97438 * 14 13 12 32 32 H 1.08001 * 119.84722 * 179.97438 * 15 14 13 33 33 H 1.09004 * 109.46611 * 329.99911 * 17 16 15 34 34 H 1.08997 * 109.46851 * 209.99944 * 17 16 15 35 35 H 1.08001 * 125.96248 * 359.76932 * 19 18 17 36 36 H 1.07997 * 125.52643 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.07790 * 179.70823 * 23 16 15 38 38 H 1.08995 * 110.01534 * 174.91414 * 24 9 7 39 39 H 1.09005 * 110.48678 * 335.78170 * 25 24 9 40 40 H 1.08993 * 110.48681 * 98.43298 * 25 24 9 41 41 H 1.09000 * 110.71854 * 279.57666 * 26 25 24 42 42 H 1.08994 * 110.92281 * 156.29371 * 26 25 24 43 43 H 1.08996 * 110.48355 * 203.40405 * 27 26 25 44 44 H 1.08996 * 110.59565 * 80.81737 * 27 26 25 45 45 H 1.09001 * 110.03101 * 238.57003 * 28 24 9 46 46 H 1.09005 * 110.03437 * 359.94215 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7076 1.3465 0.0006 5 1 1.8889 2.3966 -1.2124 6 1 1.8889 2.3965 1.2125 7 6 2.0089 -1.2041 -0.0005 8 1 3.0814 -1.2085 0.1268 9 7 1.3341 -2.3839 -0.1623 10 6 0.5292 -2.5590 -1.2291 11 8 -0.1521 -3.5621 -1.3185 12 6 0.4746 -1.5321 -2.2897 13 6 1.6023 -0.7599 -2.5772 14 6 1.5446 0.1966 -3.5690 15 6 0.3724 0.3927 -4.2782 16 6 -0.7485 -0.3686 -3.9986 17 6 -2.0202 -0.1483 -4.7767 18 7 -2.0266 -1.0153 -5.9575 19 6 -2.9774 -1.9011 -6.3015 20 7 -2.6155 -2.4704 -7.4225 21 6 -1.4449 -1.9759 -7.8231 22 7 -1.0437 -1.0815 -6.9585 23 6 -0.7062 -1.3255 -3.0057 24 6 1.4868 -3.4564 0.8239 25 6 1.1870 -2.9198 2.2388 26 6 2.2055 -3.6545 3.1466 27 6 3.4784 -3.7016 2.2653 28 6 2.9429 -3.9536 0.8407 29 1 -0.4850 0.8369 -0.0730 30 1 2.5174 -0.9114 -2.0239 31 1 2.4157 0.7947 -3.7921 32 1 0.3325 1.1434 -5.0536 33 1 -2.0780 0.8939 -5.0907 34 1 -2.8773 -0.3861 -4.1467 35 1 -3.8825 -2.1065 -5.7493 36 1 -0.9133 -2.2675 -8.7169 37 1 -1.5832 -1.9158 -2.7852 38 1 0.8137 -4.2801 0.5865 39 1 1.3473 -1.8424 2.2801 40 1 0.1665 -3.1662 2.5319 41 1 1.8590 -4.6616 3.3787 42 1 2.3895 -3.0906 4.0610 43 1 4.1291 -4.5180 2.5783 44 1 4.0111 -2.7517 2.3101 45 1 2.9764 -5.0189 0.6123 46 1 3.5358 -3.3976 0.1143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599540310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:32 Heat of formation + Delta-G solvation = 85.877806 kcal Electronic energy + Delta-G solvation = -30044.049607 eV Core-core repulsion = 26128.579865 eV Total energy + Delta-G solvation = -3915.469741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.88651 -39.52792 -38.12150 -36.52082 -34.62041 -33.94253 -31.47493 -31.07709 -30.56105 -30.25915 -28.02038 -27.19168 -26.15157 -25.02782 -22.86566 -22.18217 -21.80853 -20.76364 -20.08887 -19.65664 -19.38081 -17.36328 -16.89470 -15.92785 -15.67841 -15.58595 -15.34981 -14.86587 -14.70771 -14.47610 -14.33374 -14.09784 -13.80121 -13.34526 -13.25933 -12.78990 -12.72271 -12.59252 -12.50932 -11.92407 -11.69422 -11.57472 -11.23986 -11.16953 -11.00858 -10.85248 -10.63612 -10.56232 -10.52131 -10.43125 -10.39972 -10.06400 -9.92392 -9.72469 -9.64948 -9.54586 -9.11041 -8.59515 -8.19275 -7.85879 -7.32153 -6.44867 -4.29134 1.66563 1.84731 1.99182 2.67959 3.05611 3.09667 3.14270 3.16287 3.89594 4.03531 4.41444 4.51033 4.61060 4.83080 4.97163 4.99081 5.02018 5.29494 5.31360 5.34722 5.42463 5.50124 5.63923 5.64473 6.00226 6.02614 6.17014 6.20176 6.24193 6.25333 6.27703 6.34314 6.38020 6.45168 6.47713 6.56116 6.64207 6.65904 6.67251 6.83315 6.91111 7.00335 7.07079 7.14357 7.24022 7.34713 7.36791 7.65714 7.89148 8.20452 8.55590 8.85238 9.48069 9.91420 10.58732 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014489 B = 0.003746 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.998624 B = 7473.002134 C = 8588.485583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.281 1.281 7 C -0.347 4.347 8 H 0.083 0.917 9 N -0.441 5.441 10 C 0.555 3.445 11 O -0.605 6.605 12 C -0.054 4.054 13 C -0.046 4.046 14 C -0.154 4.154 15 C -0.080 4.080 16 C -0.143 4.143 17 C 0.177 3.823 18 N -0.366 5.366 19 C 0.249 3.751 20 N -0.553 5.553 21 C 0.186 3.814 22 N -0.308 5.308 23 C -0.049 4.049 24 C 0.134 3.866 25 C -0.119 4.119 26 C -0.123 4.123 27 C -0.116 4.116 28 C -0.128 4.128 29 H 0.270 0.730 30 H 0.148 0.852 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.216 0.784 36 H 0.212 0.788 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.197 1.286 -4.191 4.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.206 1.206 7 C -0.475 4.475 8 H 0.101 0.899 9 N -0.160 5.160 10 C 0.345 3.655 11 O -0.492 6.492 12 C -0.057 4.057 13 C -0.064 4.064 14 C -0.172 4.172 15 C -0.099 4.099 16 C -0.144 4.144 17 C 0.057 3.943 18 N -0.157 5.157 19 C -0.047 4.047 20 N -0.281 5.281 21 C -0.117 4.117 22 N -0.136 5.136 23 C -0.068 4.068 24 C 0.030 3.970 25 C -0.158 4.158 26 C -0.161 4.161 27 C -0.154 4.154 28 C -0.167 4.167 29 H 0.081 0.919 30 H 0.166 0.834 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.232 0.768 36 H 0.229 0.771 37 H 0.133 0.867 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.224 1.130 -4.296 4.448 hybrid contribution 0.137 1.190 0.433 1.274 sum -0.087 2.320 -3.863 4.507 Atomic orbital electron populations 1.69822 1.05981 1.28056 1.44098 1.25546 0.95217 0.99474 0.94374 0.86393 0.80338 0.82920 0.78476 1.18917 1.19695 1.20637 1.19049 0.91725 0.82375 1.54328 0.89938 1.43149 1.42062 1.13259 1.17525 1.18227 0.80590 0.84722 0.81922 1.90591 1.46293 1.31957 1.80315 1.19593 0.93614 0.97168 0.95328 1.21932 1.00150 0.91684 0.92664 1.20999 0.97687 1.00572 0.97920 1.20827 0.92597 0.98331 0.98179 1.19273 0.94932 1.00690 0.99505 1.20676 0.98066 0.93598 0.81975 1.50751 1.15085 1.30782 1.19042 1.26029 0.95905 0.89074 0.93722 1.70487 1.15233 1.29413 1.12980 1.25930 0.92339 0.93639 0.99765 1.78052 1.12364 1.23307 0.99841 1.20825 0.97436 0.95138 0.93446 1.21583 0.94926 0.91298 0.89222 1.22563 0.97250 1.02235 0.93712 1.22455 0.96172 0.99683 0.97779 1.22251 0.97025 1.00777 0.95322 1.22435 0.97404 0.99768 0.97044 0.91901 0.83440 0.86831 0.87161 0.88925 0.87485 0.76780 0.77136 0.86683 0.90397 0.89251 0.93043 0.92503 0.92390 0.92925 0.91692 0.92842 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.83 11.72 55.50 0.65 -20.18 16 2 C 0.06 1.46 3.23 -17.45 -0.06 1.40 16 3 Si 0.89 18.22 28.87 -169.99 -4.91 13.31 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 7 C -0.35 -7.90 4.42 -15.00 -0.07 -7.97 16 8 H 0.08 1.84 7.43 -52.48 -0.39 1.45 16 9 N -0.44 -10.32 2.34 -107.65 -0.25 -10.57 16 10 C 0.55 13.90 6.68 -12.38 -0.08 13.81 16 11 O -0.61 -16.55 16.11 5.28 0.09 -16.47 16 12 C -0.05 -1.22 3.97 -104.97 -0.42 -1.64 16 13 C -0.05 -0.94 6.59 -39.17 -0.26 -1.20 16 14 C -0.15 -2.80 10.03 -39.64 -0.40 -3.20 16 15 C -0.08 -1.37 9.69 -39.48 -0.38 -1.76 16 16 C -0.14 -2.45 5.34 -104.68 -0.56 -3.01 16 17 C 0.18 2.31 6.67 -5.19 -0.03 2.28 16 18 N -0.37 -5.19 3.68 -63.81 -0.23 -5.42 16 19 C 0.25 3.19 12.63 -90.66 -1.14 2.04 16 20 N -0.55 -8.04 11.19 -15.83 -0.18 -8.22 16 21 C 0.19 2.61 13.03 -91.82 -1.20 1.41 16 22 N -0.31 -4.82 12.56 29.29 0.37 -4.45 16 23 C -0.05 -0.99 9.25 -39.17 -0.36 -1.36 16 24 C 0.13 2.82 3.29 -66.81 -0.22 2.60 16 25 C -0.12 -2.32 6.40 -25.03 -0.16 -2.49 16 26 C -0.12 -1.92 6.91 -24.69 -0.17 -2.09 16 27 C -0.12 -1.78 6.83 -25.07 -0.17 -1.96 16 28 C -0.13 -2.28 6.30 -25.62 -0.16 -2.44 16 29 H 0.27 6.45 8.32 -40.82 -0.34 6.11 16 30 H 0.15 3.07 5.68 -52.48 -0.30 2.78 16 31 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.09 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.11 1.13 8.03 -51.93 -0.42 0.71 16 35 H 0.22 1.80 8.06 -52.49 -0.42 1.37 16 36 H 0.21 2.16 8.06 -52.49 -0.42 1.73 16 37 H 0.12 2.37 7.94 -52.49 -0.42 1.96 16 38 H 0.08 1.77 6.95 -51.93 -0.36 1.41 16 39 H 0.09 1.95 6.86 -51.93 -0.36 1.59 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 1.30 7.22 -51.93 -0.37 0.93 16 LS Contribution 376.65 15.07 5.68 5.68 Total: -1.00 -30.31 376.65 -11.03 -41.34 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.40 Total: 10.53 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -5.84 Total: -5.55 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.35 Total: -48.84 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.09 Total: -16.47 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -4.91 Total: 13.31 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.31 -11.03 -41.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599540310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.221 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds