Wall clock time and date at job start Sat Apr 11 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31361 * 1 3 3 Si 1.86811 * 119.99916 * 2 1 4 4 H 1.48499 * 109.46911 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47306 * 300.00182 * 3 2 1 6 6 H 1.48502 * 109.46952 * 60.00130 * 3 2 1 7 7 C 1.39045 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99928 * 187.82305 * 7 2 1 9 9 N 1.36867 * 119.99950 * 7.82042 * 7 2 1 10 10 C 1.34780 * 119.99796 * 54.47332 * 9 7 2 11 11 O 1.21596 * 120.00050 * 185.88235 * 10 9 7 12 12 C 1.47724 * 120.00046 * 5.87731 * 10 9 7 13 13 C 1.39669 * 120.15067 * 30.95202 * 12 10 9 14 14 C 1.37907 * 119.84820 * 179.97438 * 13 12 10 15 15 C 1.38399 * 120.15088 * 0.02562 * 14 13 12 16 16 C 1.38352 * 120.30709 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.92740 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47071 * 89.99734 * 17 16 15 19 19 C 1.34425 * 126.82019 * 125.00317 * 18 17 16 20 20 N 1.30831 * 108.07708 * 179.73505 * 19 18 17 21 21 C 1.33239 * 109.82875 * 359.97438 * 20 19 18 22 22 N 1.30712 * 108.94528 * 0.02562 * 21 20 19 23 23 C 1.37959 * 120.14988 * 0.27272 * 16 15 14 24 24 C 1.46505 * 120.00415 * 234.47111 * 9 7 2 25 25 C 1.54264 * 110.02863 * 53.52051 * 24 9 7 26 26 C 1.54970 * 104.15769 * 217.13932 * 25 24 9 27 27 C 1.54893 * 102.77819 * 37.88840 * 26 25 24 28 28 C 1.53873 * 110.03052 * 296.30645 * 24 9 7 29 29 H 0.97003 * 120.00193 * 4.98716 * 1 2 3 30 30 H 1.08005 * 120.07259 * 359.95242 * 13 12 10 31 31 H 1.07997 * 119.92570 * 179.97438 * 14 13 12 32 32 H 1.08001 * 119.84722 * 179.97438 * 15 14 13 33 33 H 1.09004 * 109.46611 * 329.99911 * 17 16 15 34 34 H 1.08997 * 109.46851 * 209.99944 * 17 16 15 35 35 H 1.08001 * 125.96248 * 359.76932 * 19 18 17 36 36 H 1.07997 * 125.52643 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.07790 * 179.70823 * 23 16 15 38 38 H 1.08995 * 110.01534 * 174.91414 * 24 9 7 39 39 H 1.09005 * 110.48678 * 335.78170 * 25 24 9 40 40 H 1.08993 * 110.48681 * 98.43298 * 25 24 9 41 41 H 1.09000 * 110.71854 * 279.57666 * 26 25 24 42 42 H 1.08994 * 110.92281 * 156.29371 * 26 25 24 43 43 H 1.08996 * 110.48355 * 203.40405 * 27 26 25 44 44 H 1.08996 * 110.59565 * 80.81737 * 27 26 25 45 45 H 1.09001 * 110.03101 * 238.57003 * 28 24 9 46 46 H 1.09005 * 110.03437 * 359.94215 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7076 1.3465 0.0006 5 1 1.8889 2.3966 -1.2124 6 1 1.8889 2.3965 1.2125 7 6 2.0089 -1.2041 -0.0005 8 1 3.0814 -1.2085 0.1268 9 7 1.3341 -2.3839 -0.1623 10 6 0.5292 -2.5590 -1.2291 11 8 -0.1521 -3.5621 -1.3185 12 6 0.4746 -1.5321 -2.2897 13 6 1.6023 -0.7599 -2.5772 14 6 1.5446 0.1966 -3.5690 15 6 0.3724 0.3927 -4.2782 16 6 -0.7485 -0.3686 -3.9986 17 6 -2.0202 -0.1483 -4.7767 18 7 -2.0266 -1.0153 -5.9575 19 6 -2.9774 -1.9011 -6.3015 20 7 -2.6155 -2.4704 -7.4225 21 6 -1.4449 -1.9759 -7.8231 22 7 -1.0437 -1.0815 -6.9585 23 6 -0.7062 -1.3255 -3.0057 24 6 1.4868 -3.4564 0.8239 25 6 1.1870 -2.9198 2.2388 26 6 2.2055 -3.6545 3.1466 27 6 3.4784 -3.7016 2.2653 28 6 2.9429 -3.9536 0.8407 29 1 -0.4850 0.8369 -0.0730 30 1 2.5174 -0.9114 -2.0239 31 1 2.4157 0.7947 -3.7921 32 1 0.3325 1.1434 -5.0536 33 1 -2.0780 0.8939 -5.0907 34 1 -2.8773 -0.3861 -4.1467 35 1 -3.8825 -2.1065 -5.7493 36 1 -0.9133 -2.2675 -8.7169 37 1 -1.5832 -1.9158 -2.7852 38 1 0.8137 -4.2801 0.5865 39 1 1.3473 -1.8424 2.2801 40 1 0.1665 -3.1662 2.5319 41 1 1.8590 -4.6616 3.3787 42 1 2.3895 -3.0906 4.0610 43 1 4.1291 -4.5180 2.5783 44 1 4.0111 -2.7517 2.3101 45 1 2.9764 -5.0189 0.6123 46 1 3.5358 -3.3976 0.1143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599540310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:31 Heat of formation + Delta-G solvation = 72.121600 kcal Electronic energy + Delta-G solvation = -30044.646120 eV Core-core repulsion = 26128.579865 eV Total energy + Delta-G solvation = -3916.066255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.92380 -41.21519 -39.61609 -38.17440 -36.23184 -35.26657 -33.24672 -32.15256 -31.88781 -31.76899 -29.48583 -28.70544 -27.38154 -26.82387 -24.42949 -23.38185 -22.83943 -22.10961 -21.52082 -21.24121 -21.02775 -18.82243 -18.09332 -17.61777 -17.16449 -17.11059 -16.74056 -16.30563 -16.12127 -15.80723 -15.75745 -15.41968 -15.01010 -14.93451 -14.74285 -14.31919 -14.21386 -14.09558 -13.66763 -13.45926 -13.27291 -13.02758 -12.83937 -12.63601 -12.55699 -12.41147 -12.23294 -12.04968 -11.91613 -11.90189 -11.84280 -11.42947 -11.33879 -11.02048 -10.84814 -10.73300 -10.64212 -10.42578 -9.69579 -9.46674 -9.10335 -8.23379 -6.12214 0.26062 0.48261 0.78731 1.41822 1.47665 1.55543 1.59048 2.06592 2.19074 2.35733 2.91176 3.09623 3.29227 3.52879 3.56317 3.83072 3.85077 3.90257 4.07241 4.12290 4.16822 4.21841 4.38304 4.40970 4.49431 4.59174 4.67766 4.71880 4.76833 4.79224 4.82751 4.90894 5.05212 5.12981 5.14938 5.17999 5.23672 5.31572 5.39621 5.46377 5.54077 5.55192 5.59832 5.62879 5.67179 5.80972 5.93703 6.08704 6.18506 6.71881 7.05465 7.17158 7.62426 8.08751 8.80905 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014489 B = 0.003746 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.998624 B = 7473.002134 C = 8588.485583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.288 1.288 7 C -0.348 4.348 8 H 0.087 0.913 9 N -0.442 5.442 10 C 0.533 3.467 11 O -0.648 6.648 12 C -0.082 4.082 13 C -0.059 4.059 14 C -0.153 4.153 15 C -0.078 4.078 16 C -0.131 4.131 17 C 0.178 3.822 18 N -0.374 5.374 19 C 0.253 3.747 20 N -0.578 5.578 21 C 0.184 3.816 22 N -0.341 5.341 23 C -0.066 4.066 24 C 0.120 3.880 25 C -0.115 4.115 26 C -0.111 4.111 27 C -0.107 4.107 28 C -0.122 4.122 29 H 0.269 0.731 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.253 0.747 36 H 0.239 0.761 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.712 2.614 -4.547 5.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.167 4.167 3 Si 0.767 3.233 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.215 1.215 7 C -0.475 4.475 8 H 0.105 0.895 9 N -0.159 5.159 10 C 0.325 3.675 11 O -0.538 6.538 12 C -0.085 4.085 13 C -0.078 4.078 14 C -0.171 4.171 15 C -0.096 4.096 16 C -0.132 4.132 17 C 0.058 3.942 18 N -0.164 5.164 19 C -0.043 4.043 20 N -0.306 5.306 21 C -0.119 4.119 22 N -0.169 5.169 23 C -0.086 4.086 24 C 0.016 3.984 25 C -0.154 4.154 26 C -0.149 4.149 27 C -0.145 4.145 28 C -0.161 4.161 29 H 0.078 0.922 30 H 0.156 0.844 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.269 0.731 36 H 0.255 0.745 37 H 0.119 0.881 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.723 2.463 -4.633 5.297 hybrid contribution -0.203 0.730 0.503 0.910 sum 0.520 3.193 -4.130 5.246 Atomic orbital electron populations 1.69939 1.07411 1.28462 1.45201 1.26047 0.95469 1.01634 0.93580 0.85624 0.80006 0.79581 0.78095 1.17622 1.19115 1.21463 1.19165 0.91803 0.82386 1.54165 0.89549 1.43367 1.41274 1.13883 1.17377 1.18855 0.80667 0.85032 0.82927 1.90528 1.48216 1.33691 1.81391 1.19585 0.95332 0.97794 0.95758 1.21822 0.99163 0.92693 0.94078 1.21323 0.99205 0.99699 0.96864 1.21210 0.91937 0.98393 0.98092 1.19609 0.96844 0.98639 0.98116 1.20839 0.96767 0.94927 0.81669 1.50741 1.15305 1.31369 1.19032 1.26829 0.96477 0.87665 0.93294 1.70525 1.15812 1.30244 1.14067 1.26534 0.92232 0.92868 1.00227 1.77981 1.13607 1.24579 1.00773 1.20865 0.96474 0.96454 0.94797 1.21820 0.96699 0.90227 0.89612 1.22464 0.97985 1.01013 0.93916 1.22423 0.94691 1.00231 0.97568 1.22224 0.97159 1.02006 0.93072 1.22370 0.94766 1.00075 0.98842 0.92157 0.84367 0.84166 0.84245 0.86497 0.85019 0.73110 0.74541 0.88078 0.93120 0.91750 0.94355 0.90831 0.90416 0.89699 0.91788 0.91690 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.14 11.72 21.68 0.25 -43.89 16 2 C 0.04 1.84 3.23 84.96 0.27 2.11 16 3 Si 0.94 36.76 28.87 68.60 1.98 38.74 16 4 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 5 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.29 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.35 -16.18 4.42 84.10 0.37 -15.81 16 8 H 0.09 3.89 7.43 -2.91 -0.02 3.87 16 9 N -0.44 -21.60 2.34 -612.74 -1.44 -23.04 16 10 C 0.53 28.24 6.68 86.75 0.58 28.82 16 11 O -0.65 -37.91 16.11 -4.02 -0.06 -37.97 16 12 C -0.08 -3.83 3.97 -20.09 -0.08 -3.91 16 13 C -0.06 -2.45 6.59 22.54 0.15 -2.30 16 14 C -0.15 -5.34 10.03 22.23 0.22 -5.12 16 15 C -0.08 -2.48 9.69 22.34 0.22 -2.27 16 16 C -0.13 -4.34 5.34 -19.90 -0.11 -4.44 16 17 C 0.18 4.23 6.67 85.63 0.57 4.80 16 18 N -0.37 -9.88 3.68 -355.80 -1.31 -11.19 16 19 C 0.25 6.00 12.63 180.36 2.28 8.28 16 20 N -0.58 -15.98 11.19 -204.01 -2.28 -18.26 16 21 C 0.18 4.90 13.03 180.77 2.36 7.25 16 22 N -0.34 -10.15 12.56 -61.25 -0.77 -10.92 16 23 C -0.07 -2.76 9.25 22.54 0.21 -2.55 16 24 C 0.12 5.26 3.29 45.71 0.15 5.41 16 25 C -0.12 -4.60 6.40 31.70 0.20 -4.40 16 26 C -0.11 -3.28 6.91 31.91 0.22 -3.06 16 27 C -0.11 -3.06 6.83 31.67 0.22 -2.84 16 28 C -0.12 -4.33 6.30 31.32 0.20 -4.14 16 29 H 0.27 13.04 8.32 -92.71 -0.77 12.27 16 30 H 0.14 5.86 5.68 -2.91 -0.02 5.85 16 31 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 32 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.12 2.24 8.08 -2.39 -0.02 2.22 16 34 H 0.13 2.45 8.03 -2.39 -0.02 2.44 16 35 H 0.25 3.55 8.06 -2.91 -0.02 3.53 16 36 H 0.24 4.49 8.06 -2.91 -0.02 4.46 16 37 H 0.10 4.38 7.94 -2.91 -0.02 4.36 16 38 H 0.05 2.46 6.95 -2.39 -0.02 2.44 16 39 H 0.06 2.89 6.86 -2.38 -0.02 2.87 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 43 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 46 H 0.06 2.18 7.22 -2.38 -0.02 2.17 16 Total: -1.00 -69.43 376.65 5.39 -64.04 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.99 Total: 36.64 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 8.03 Total: 5.85 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -5.54 Total: -107.30 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.06 Total: -37.97 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 1.98 Total: 38.74 kcal Total: -69.43 5.39 -64.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599540310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.160 kcal (2) G-P(sol) polarization free energy of solvation -69.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds