Wall clock time and date at job start Sat Apr 11 2020 06:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 120.00101 * 2 1 4 4 H 1.48508 * 109.47012 * 270.00475 * 3 2 1 5 5 H 1.48505 * 109.46940 * 30.00186 * 3 2 1 6 6 H 1.48497 * 109.47159 * 150.00389 * 3 2 1 7 7 C 1.38809 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00227 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99654 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99520 * 180.02562 * 9 7 2 11 11 H 1.08987 * 109.47349 * 34.99790 * 10 9 7 12 12 C 1.53003 * 109.46729 * 274.99473 * 10 9 7 13 13 C 1.53005 * 109.46570 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47550 * 60.00319 * 13 12 10 15 15 C 1.53005 * 109.46998 * 300.00016 * 14 13 12 16 16 H 1.09004 * 109.47083 * 299.99744 * 15 14 13 17 17 N 1.46502 * 109.47250 * 179.97438 * 15 14 13 18 18 C 1.34773 * 119.99863 * 84.99695 * 17 15 14 19 19 O 1.21502 * 120.00265 * 359.97438 * 18 17 15 20 20 C 1.48283 * 119.99861 * 180.02562 * 18 17 15 21 21 C 1.40369 * 119.18773 * 180.02562 * 20 18 17 22 22 C 1.36554 * 119.82374 * 179.97438 * 21 20 18 23 23 C 1.40554 * 118.05916 * 359.97438 * 22 21 20 24 24 C 1.40519 * 122.20077 * 180.02562 * 23 22 21 25 25 C 1.36256 * 118.68284 * 180.22713 * 24 23 22 26 26 N 1.32590 * 121.79714 * 359.47287 * 25 24 23 27 27 C 1.31113 * 122.88173 * 0.54582 * 26 25 24 28 28 C 1.40860 * 119.95536 * 359.72993 * 27 26 25 29 29 N 1.31896 * 119.18637 * 359.97438 * 20 18 17 30 30 C 1.52996 * 109.47152 * 59.99668 * 15 14 13 31 31 H 0.97008 * 120.00385 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00055 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.47155 * 300.00040 * 12 10 9 34 34 H 1.09001 * 109.46844 * 60.00550 * 12 10 9 35 35 H 1.09002 * 109.46553 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.46710 * 299.99972 * 13 12 10 37 37 H 1.08996 * 109.47497 * 179.97438 * 14 13 12 38 38 H 1.08999 * 109.47096 * 59.99354 * 14 13 12 39 39 H 0.96994 * 119.99878 * 265.00088 * 17 15 14 40 40 H 1.07997 * 120.08389 * 359.94596 * 21 20 18 41 41 H 1.08000 * 120.97213 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.65497 * 359.94487 * 24 23 22 43 43 H 1.08001 * 119.10378 * 179.74020 * 25 24 23 44 44 H 1.07997 * 120.02352 * 179.75260 * 27 26 25 45 45 H 1.08999 * 109.47389 * 60.00387 * 30 15 14 46 46 H 1.09001 * 109.47242 * 179.97438 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4002 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9687 -3.5505 0.5888 12 6 2.4218 -4.0355 -1.4376 13 6 3.1863 -5.3609 -1.4376 14 6 2.3088 -6.4560 -0.8282 15 6 1.9449 -6.0771 0.6089 16 1 2.8557 -5.9713 1.1984 17 7 1.1041 -7.1254 1.1923 18 6 1.6729 -8.2081 1.7587 19 8 2.8829 -8.3150 1.7850 20 6 0.8218 -9.2694 2.3487 21 6 1.4321 -10.3894 2.9347 22 6 0.6609 -11.3743 3.4824 23 6 -0.7357 -11.2229 3.4363 24 6 -1.6110 -12.1820 3.9734 25 6 -2.9532 -11.9647 3.8851 26 7 -3.4484 -10.8732 3.3181 27 6 -2.6933 -9.9369 2.7965 28 6 -1.2909 -10.0648 2.8292 29 7 -0.4900 -9.1372 2.3108 30 6 1.1804 -4.7519 0.6089 31 1 -0.4851 0.8401 0.0004 32 1 0.3555 -2.3880 0.0002 33 1 1.5111 -4.1418 -2.0269 34 1 3.0467 -3.2552 -1.8719 35 1 3.4459 -5.6305 -2.4614 36 1 4.0970 -5.2549 -0.8481 37 1 2.8533 -7.4002 -0.8286 38 1 1.3981 -6.5618 -1.4177 39 1 0.1382 -7.0403 1.1709 40 1 2.5088 -10.4722 2.9520 41 1 1.1109 -12.2437 3.9384 42 1 -1.2275 -13.0760 4.4427 43 1 -3.6323 -12.6995 4.2919 44 1 -3.1462 -9.0680 2.3423 45 1 0.2697 -4.8577 0.0195 46 1 0.9208 -4.4822 1.6326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981222823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:44 Heat of formation + Delta-G solvation = 30.946146 kcal Electronic energy + Delta-G solvation = -28168.453246 eV Core-core repulsion = 24250.601489 eV Total energy + Delta-G solvation = -3917.851757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.75040 -40.09467 -38.51794 -37.67341 -34.84664 -34.29873 -33.30712 -32.02631 -31.15098 -31.01391 -29.30899 -27.79825 -26.03104 -24.81187 -23.72746 -23.18458 -22.28437 -21.67385 -20.47055 -19.70451 -18.90301 -18.31516 -17.92027 -17.05599 -16.47214 -16.12121 -15.66068 -15.35476 -15.08397 -14.80647 -14.65608 -14.43160 -14.28650 -13.83939 -13.71374 -13.55831 -13.52423 -13.13847 -13.00198 -12.66951 -12.57110 -12.14667 -12.06619 -11.37511 -11.03929 -10.99075 -10.87009 -10.82334 -10.71405 -10.35644 -10.29205 -10.17445 -10.11451 -9.95980 -9.81412 -9.72810 -9.59869 -9.07213 -8.94327 -8.85416 -6.95094 -5.75664 -3.04279 -0.44781 0.06247 1.27483 2.06111 2.86176 2.95767 3.44471 3.49257 3.50375 3.51366 3.61616 3.85140 3.95918 4.12907 4.21023 4.35203 4.58917 4.64075 4.77805 4.97270 5.00850 5.07831 5.14547 5.22985 5.31326 5.35726 5.50972 5.59920 5.61633 5.69198 5.74089 5.79769 5.87652 5.97490 6.02206 6.03552 6.14156 6.28055 6.32943 6.50393 6.53408 6.61515 6.73474 6.97386 6.98703 7.13532 7.39799 7.47979 7.71851 8.02881 8.43001 9.54206 10.11598 10.46359 11.47031 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.002147 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.055451 B =13038.534205 C =14099.627266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.146 3.854 16 H 0.090 0.910 17 N -0.698 5.698 18 C 0.567 3.433 19 O -0.530 6.530 20 C 0.121 3.879 21 C -0.106 4.106 22 C -0.066 4.066 23 C -0.065 4.065 24 C -0.149 4.149 25 C 0.082 3.918 26 N -0.476 5.476 27 C 0.178 3.822 28 C 0.065 3.935 29 N -0.423 5.423 30 C -0.130 4.130 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.410 0.590 40 H 0.157 0.843 41 H 0.151 0.849 42 H 0.144 0.856 43 H 0.160 0.840 44 H 0.178 0.822 45 H 0.066 0.934 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.947 -28.184 6.406 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.042 3.958 16 H 0.108 0.892 17 N -0.347 5.347 18 C 0.350 3.650 19 O -0.405 6.405 20 C -0.033 4.033 21 C -0.128 4.128 22 C -0.092 4.092 23 C -0.071 4.071 24 C -0.169 4.169 25 C -0.059 4.059 26 N -0.184 5.184 27 C 0.005 3.995 28 C -0.061 4.061 29 N -0.136 5.136 30 C -0.169 4.169 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.246 0.754 40 H 0.174 0.826 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.177 0.823 44 H 0.195 0.805 45 H 0.085 0.915 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.349 -27.396 6.122 28.170 hybrid contribution 0.896 0.070 0.376 0.974 sum -1.453 -27.326 6.498 28.126 Atomic orbital electron populations 1.69657 1.05090 1.25617 1.57824 1.24737 0.95513 0.97669 1.03115 0.86209 0.78678 0.83932 0.77496 1.21761 1.21824 1.20763 1.19241 0.91010 0.84057 1.42474 0.91146 1.42403 1.05766 0.99688 1.88597 1.20095 0.94083 0.85521 0.92969 0.93332 1.22299 0.99759 0.95217 1.00495 1.21483 0.98487 0.95338 0.99969 1.21886 1.00255 0.98880 0.95247 1.21152 0.94451 0.86019 0.94130 0.89166 1.46050 1.11534 1.20070 1.57095 1.17834 0.86941 0.81705 0.78534 1.90800 1.13233 1.77940 1.58547 1.21591 0.89854 0.95037 0.96864 1.21924 1.02936 0.92515 0.95401 1.21440 0.91598 0.99177 0.97022 1.19098 0.95058 0.95388 0.97605 1.21918 0.94303 0.99723 1.00969 1.22374 0.93677 0.94562 0.95336 1.67544 1.40413 1.01819 1.08664 1.23309 0.87170 0.96808 0.92262 1.19904 0.95831 0.91520 0.98805 1.67764 1.04187 1.27639 1.14020 1.22098 0.99420 0.93120 1.02214 0.93547 0.78300 0.92610 0.91856 0.92455 0.92130 0.92142 0.91898 0.75358 0.82568 0.83105 0.83861 0.82282 0.80522 0.91517 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 2 C -0.01 -0.41 5.50 -17.44 -0.10 -0.51 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 9 N -0.72 -17.78 5.12 -53.42 -0.27 -18.05 16 10 C 0.18 3.54 2.77 -67.92 -0.19 3.35 16 11 H 0.05 0.97 8.08 -51.94 -0.42 0.56 16 12 C -0.14 -2.39 5.50 -26.73 -0.15 -2.54 16 13 C -0.11 -1.61 5.92 -26.73 -0.16 -1.77 16 14 C -0.12 -1.66 5.49 -26.73 -0.15 -1.80 16 15 C 0.15 2.04 2.45 -67.93 -0.17 1.87 16 16 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 17 N -0.70 -8.72 5.06 -54.61 -0.28 -9.00 16 18 C 0.57 7.39 7.78 -12.13 -0.09 7.29 16 19 O -0.53 -8.17 15.94 5.36 0.09 -8.09 16 20 C 0.12 1.34 6.75 -82.91 -0.56 0.78 16 21 C -0.11 -0.93 9.54 -39.39 -0.38 -1.31 16 22 C -0.07 -0.45 9.93 -39.32 -0.39 -0.84 16 23 C -0.06 -0.53 5.75 -106.70 -0.61 -1.14 16 24 C -0.15 -0.90 9.88 -39.44 -0.39 -1.29 16 25 C 0.08 0.56 11.07 -17.94 -0.20 0.36 16 26 N -0.48 -4.29 10.28 -13.05 -0.13 -4.43 16 27 C 0.18 1.59 11.26 -16.87 -0.19 1.40 16 28 C 0.07 0.64 6.62 -84.88 -0.56 0.07 16 29 N -0.42 -4.55 9.49 -7.51 -0.07 -4.62 16 30 C -0.13 -2.05 4.86 -26.73 -0.13 -2.18 16 31 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.41 4.63 7.90 -40.82 -0.32 4.30 16 40 H 0.16 1.23 7.60 -52.49 -0.40 0.83 16 41 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 43 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 383.30 15.07 5.78 5.78 Total: -1.00 -32.81 383.30 -10.22 -43.03 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.47 Total: 10.23 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -4.56 Total: -4.89 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -0.03 Total: -63.42 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.09 Total: -8.09 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.81 -10.22 -43.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981222823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.977 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds