Wall clock time and date at job start Sat Apr 11 2020 06:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86793 * 120.00078 * 2 1 4 4 H 1.48500 * 109.47328 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47274 * 239.99499 * 3 2 1 6 6 H 1.48505 * 109.47631 * 119.99927 * 3 2 1 7 7 C 1.38812 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00123 * 205.59771 * 7 2 1 9 9 N 1.36941 * 119.99875 * 25.59882 * 7 2 1 10 10 C 1.43464 * 118.93992 * 214.75665 * 9 7 2 11 11 C 1.53798 * 107.95974 * 273.61306 * 10 9 7 12 12 C 1.47140 * 111.84030 * 281.66498 * 11 10 9 13 13 N 1.48222 * 110.34025 * 58.29566 * 12 11 10 14 14 C 1.34771 * 119.96557 * 102.47436 * 13 12 11 15 15 O 1.21693 * 120.00489 * 356.85368 * 14 13 12 16 16 C 1.46704 * 119.99960 * 176.86331 * 14 13 12 17 17 C 1.36706 * 126.85596 * 15.70851 * 16 14 13 18 18 N 1.33317 * 107.83882 * 179.84080 * 17 16 14 19 19 C 1.30870 * 109.73961 * 0.43991 * 18 17 16 20 20 N 1.34734 * 109.13769 * 359.72890 * 19 18 17 21 21 C 1.40107 * 126.50429 * 180.02562 * 20 19 18 22 22 C 1.38851 * 120.06944 * 126.07155 * 21 20 19 23 23 C 1.38119 * 119.93473 * 179.74748 * 22 21 20 24 24 C 1.38284 * 120.06456 * 0.52525 * 23 22 21 25 25 C 1.38281 * 120.13715 * 359.74487 * 24 23 22 26 26 C 1.38116 * 120.06567 * 359.97438 * 25 24 23 27 27 C 1.43622 * 120.06305 * 282.49110 * 13 12 11 28 28 C 1.48860 * 118.93919 * 34.48979 * 9 7 2 29 29 H 0.96996 * 120.00583 * 183.62767 * 1 2 3 30 30 H 1.08999 * 109.75993 * 33.22815 * 10 9 7 31 31 H 1.08999 * 109.75903 * 153.94315 * 10 9 7 32 32 H 1.09000 * 109.00844 * 42.26768 * 11 10 9 33 33 H 1.08998 * 109.00467 * 161.05943 * 11 10 9 34 34 H 1.08990 * 109.32644 * 178.56244 * 12 11 10 35 35 H 1.09003 * 109.32503 * 298.21335 * 12 11 10 36 36 H 1.08005 * 126.07617 * 0.02562 * 17 16 14 37 37 H 1.08001 * 125.43063 * 179.74831 * 19 18 17 38 38 H 1.07996 * 120.03544 * 0.02562 * 22 21 20 39 39 H 1.07991 * 119.97126 * 180.24883 * 23 22 21 40 40 H 1.08000 * 119.93599 * 179.72646 * 24 23 22 41 41 H 1.08004 * 119.97088 * 179.97438 * 25 24 23 42 42 H 1.08002 * 120.03542 * 180.02562 * 26 25 24 43 43 H 1.09000 * 108.87113 * 211.44581 * 27 13 12 44 44 H 1.09000 * 108.87427 * 329.98581 * 27 13 12 45 45 H 1.09002 * 109.47919 * 260.62734 * 28 9 7 46 46 H 1.09004 * 109.48032 * 20.65733 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6963 -1.2124 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0107 -1.2479 0.4047 9 7 1.4262 -2.3301 -0.5114 10 6 1.7118 -3.5972 0.0978 11 6 2.9956 -4.1523 -0.5418 12 6 2.7376 -4.7405 -1.8656 13 7 2.1409 -3.7299 -2.7710 14 6 2.9030 -3.1321 -3.7081 15 8 4.0928 -3.3794 -3.7735 16 6 2.2984 -2.1830 -4.6493 17 6 1.0789 -1.5765 -4.5323 18 7 0.9110 -0.7885 -5.5945 19 6 1.9558 -0.8743 -6.3779 20 7 2.8459 -1.7279 -5.8353 21 6 4.0903 -2.0860 -6.3704 22 6 5.2414 -1.9506 -5.6058 23 6 6.4660 -2.3094 -6.1343 24 6 6.5477 -2.7930 -7.4273 25 6 5.4038 -2.9238 -8.1932 26 6 4.1756 -2.5721 -7.6683 27 6 0.7515 -3.3869 -2.6503 28 6 0.5109 -2.2012 -1.6782 29 1 -0.4851 -0.8383 0.0531 30 1 1.8610 -3.4657 1.1694 31 1 0.8846 -4.2851 -0.0774 32 1 3.7180 -3.3429 -0.6478 33 1 3.4152 -4.9176 0.1110 34 1 3.6757 -5.0968 -2.2911 35 1 2.0481 -5.5781 -1.7600 36 1 0.3775 -1.7095 -3.7218 37 1 2.0842 -0.3450 -7.3106 38 1 5.1787 -1.5692 -4.5974 39 1 7.3611 -2.2081 -5.5388 40 1 7.5069 -3.0688 -7.8399 41 1 5.4708 -3.3013 -9.2028 42 1 3.2825 -2.6748 -8.2667 43 1 0.3675 -3.1196 -3.6348 44 1 0.2046 -4.2553 -2.2829 45 1 -0.5228 -2.2143 -1.3325 46 1 0.7098 -1.2619 -2.1942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981333410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:56 Heat of formation + Delta-G solvation = 120.942995 kcal Electronic energy + Delta-G solvation = -30989.411168 eV Core-core repulsion = 27075.461967 eV Total energy + Delta-G solvation = -3913.949201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.43084 -39.60803 -39.07936 -37.10860 -34.65003 -34.00089 -33.16574 -31.21091 -30.97355 -29.79514 -29.12832 -27.86025 -25.46043 -23.84224 -23.58791 -23.05422 -22.91549 -21.44280 -20.71568 -19.83201 -19.26116 -17.84574 -17.28935 -16.47845 -16.38179 -16.10672 -15.75999 -15.22318 -14.98200 -14.50548 -14.28831 -14.23794 -13.87734 -13.68151 -13.58872 -13.46942 -13.19069 -13.02976 -12.91048 -12.48735 -12.25583 -11.91623 -11.73693 -11.38284 -11.27010 -10.99922 -10.69913 -10.48174 -10.39090 -10.33444 -10.29865 -10.03656 -9.98921 -9.54794 -9.36049 -9.06968 -8.76160 -8.43347 -8.30596 -8.18725 -6.82208 -6.06610 -3.32334 0.82657 1.22432 1.63885 2.50113 2.99186 3.42028 3.49046 3.54386 3.54940 3.59615 3.71177 4.58075 4.63026 4.66723 4.69799 4.75152 4.94188 5.07559 5.12710 5.19697 5.28608 5.34448 5.45983 5.47511 5.55051 5.60302 5.63296 5.78374 5.82678 5.87751 5.91556 5.98694 6.14171 6.16226 6.32785 6.33548 6.35128 6.41132 6.57713 6.60367 6.70801 6.76203 6.84072 6.88778 7.12508 7.27206 7.74144 7.97595 8.13323 8.46853 8.59276 9.15963 9.82767 10.25349 11.18338 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012111 B = 0.004423 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.352590 B = 6328.620682 C = 6863.379709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.011 4.011 3 Si 1.057 2.943 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.360 4.360 8 H 0.048 0.952 9 N -0.589 5.589 10 C 0.164 3.836 11 C -0.169 4.169 12 C 0.135 3.865 13 N -0.568 5.568 14 C 0.596 3.404 15 O -0.551 6.551 16 C -0.072 4.072 17 C 0.025 3.975 18 N -0.489 5.489 19 C 0.206 3.794 20 N -0.387 5.387 21 C 0.108 3.892 22 C -0.058 4.058 23 C -0.111 4.111 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.112 4.112 27 C 0.058 3.942 28 C 0.127 3.873 29 H 0.268 0.732 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.209 0.791 37 H 0.211 0.789 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.041 0.959 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.969 -8.456 -14.687 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.215 4.215 3 Si 0.887 3.113 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.489 4.489 8 H 0.066 0.934 9 N -0.311 5.311 10 C 0.036 3.964 11 C -0.210 4.210 12 C 0.014 3.986 13 N -0.298 5.298 14 C 0.384 3.616 15 O -0.431 6.431 16 C -0.186 4.186 17 C -0.126 4.126 18 N -0.206 5.206 19 C -0.074 4.074 20 N -0.066 5.066 21 C 0.017 3.983 22 C -0.078 4.078 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.137 4.137 26 C -0.131 4.131 27 C -0.067 4.067 28 C 0.001 3.999 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.225 0.775 37 H 0.227 0.773 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.806 -6.499 -14.920 17.640 hybrid contribution 0.888 -2.027 0.341 2.239 sum 7.694 -8.526 -14.580 18.560 Atomic orbital electron populations 1.70826 1.06613 1.30146 1.46842 1.25830 0.96416 1.01490 0.97762 0.83637 0.75054 0.76390 0.76233 1.20940 1.22160 1.21902 1.19784 0.98032 0.88887 1.42200 0.93375 1.43557 1.54468 1.03066 1.30019 1.20322 0.92795 0.87579 0.95732 1.21837 1.02661 1.00771 0.95751 1.20606 0.98655 0.89073 0.90256 1.46963 1.10245 1.40159 1.32385 1.16649 0.85625 0.79257 0.80047 1.90755 1.14394 1.64190 1.73747 1.20903 0.97609 1.07962 0.92142 1.24028 0.95404 0.94923 0.98261 1.70264 1.23906 1.21773 1.04635 1.25262 0.86004 0.95196 1.00986 1.42683 1.13819 1.33170 1.16916 1.17684 0.83366 1.03161 0.94060 1.21232 0.90715 0.96232 0.99588 1.21065 0.97355 0.99014 0.95487 1.21267 0.98629 0.98680 0.94319 1.20938 0.91741 1.00821 1.00167 1.21021 0.98937 0.99222 0.93957 1.22718 0.81691 1.00588 1.01728 1.22384 0.94168 0.95748 0.87641 0.92052 0.93304 0.95103 0.91183 0.92445 0.90287 0.91766 0.77513 0.77270 0.84729 0.85239 0.85603 0.85307 0.85468 0.89239 0.91231 0.94148 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.38 12.96 55.49 0.72 -25.66 16 2 C -0.01 -0.31 4.65 -17.43 -0.08 -0.39 16 3 Si 1.06 25.86 29.99 -169.99 -5.10 20.76 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.36 -9.85 9.03 -15.06 -0.14 -9.99 16 8 H 0.05 1.38 7.95 -52.49 -0.42 0.96 16 9 N -0.59 -13.90 2.27 -171.78 -0.39 -14.29 16 10 C 0.16 3.29 5.63 -5.23 -0.03 3.26 16 11 C -0.17 -3.03 5.64 -29.13 -0.16 -3.20 16 12 C 0.14 2.21 5.68 -5.91 -0.03 2.18 16 13 N -0.57 -10.23 2.46 -177.97 -0.44 -10.67 16 14 C 0.60 11.64 7.61 -12.84 -0.10 11.54 16 15 O -0.55 -11.45 12.79 5.20 0.07 -11.38 16 16 C -0.07 -1.34 6.56 -82.07 -0.54 -1.88 16 17 C 0.02 0.46 8.98 -17.46 -0.16 0.30 16 18 N -0.49 -8.58 11.20 -14.36 -0.16 -8.74 16 19 C 0.21 3.03 12.28 -90.35 -1.11 1.92 16 20 N -0.39 -6.24 2.86 -58.64 -0.17 -6.41 16 21 C 0.11 1.57 5.61 -83.62 -0.47 1.10 16 22 C -0.06 -0.88 7.65 -39.40 -0.30 -1.18 16 23 C -0.11 -1.33 10.04 -39.61 -0.40 -1.72 16 24 C -0.11 -1.09 10.04 -39.55 -0.40 -1.49 16 25 C -0.12 -1.13 10.04 -39.61 -0.40 -1.53 16 26 C -0.11 -1.28 9.74 -39.40 -0.38 -1.66 16 27 C 0.06 0.99 4.72 -4.40 -0.02 0.97 16 28 C 0.13 2.70 4.44 -1.57 -0.01 2.69 16 29 H 0.27 7.76 6.56 -40.82 -0.27 7.49 16 30 H 0.05 1.03 8.02 -51.93 -0.42 0.61 16 31 H 0.03 0.56 7.59 -51.93 -0.39 0.16 16 32 H 0.07 1.52 7.91 -51.93 -0.41 1.11 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.31 7.16 -51.93 -0.37 0.94 16 35 H 0.06 0.88 8.05 -51.93 -0.42 0.47 16 36 H 0.21 3.81 3.12 -52.48 -0.16 3.65 16 37 H 0.21 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.13 2.39 7.14 -52.49 -0.37 2.01 16 39 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 43 H 0.09 1.42 4.37 -51.93 -0.23 1.19 16 44 H 0.07 1.04 7.72 -51.93 -0.40 0.64 16 45 H 0.04 0.88 7.15 -51.93 -0.37 0.51 16 46 H 0.07 1.76 5.39 -51.93 -0.28 1.48 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -33.30 360.74 -10.60 -43.90 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.85 Total: 6.12 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -4.72 Total: 0.94 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: -0.44 Total: -65.77 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.38 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.10 Total: 20.76 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.30 -10.60 -43.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981333410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.843 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds