Wall clock time and date at job start Sat Apr 11 2020 06:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86793 * 120.00078 * 2 1 4 4 H 1.48500 * 109.47328 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47274 * 239.99499 * 3 2 1 6 6 H 1.48505 * 109.47631 * 119.99927 * 3 2 1 7 7 C 1.38812 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00123 * 205.59771 * 7 2 1 9 9 N 1.36941 * 119.99875 * 25.59882 * 7 2 1 10 10 C 1.43464 * 118.93992 * 214.75665 * 9 7 2 11 11 C 1.53798 * 107.95974 * 273.61306 * 10 9 7 12 12 C 1.47140 * 111.84030 * 281.66498 * 11 10 9 13 13 N 1.48222 * 110.34025 * 58.29566 * 12 11 10 14 14 C 1.34771 * 119.96557 * 102.47436 * 13 12 11 15 15 O 1.21693 * 120.00489 * 356.85368 * 14 13 12 16 16 C 1.46704 * 119.99960 * 176.86331 * 14 13 12 17 17 C 1.36706 * 126.85596 * 15.70851 * 16 14 13 18 18 N 1.33317 * 107.83882 * 179.84080 * 17 16 14 19 19 C 1.30870 * 109.73961 * 0.43991 * 18 17 16 20 20 N 1.34734 * 109.13769 * 359.72890 * 19 18 17 21 21 C 1.40107 * 126.50429 * 180.02562 * 20 19 18 22 22 C 1.38851 * 120.06944 * 126.07155 * 21 20 19 23 23 C 1.38119 * 119.93473 * 179.74748 * 22 21 20 24 24 C 1.38284 * 120.06456 * 0.52525 * 23 22 21 25 25 C 1.38281 * 120.13715 * 359.74487 * 24 23 22 26 26 C 1.38116 * 120.06567 * 359.97438 * 25 24 23 27 27 C 1.43622 * 120.06305 * 282.49110 * 13 12 11 28 28 C 1.48860 * 118.93919 * 34.48979 * 9 7 2 29 29 H 0.96996 * 120.00583 * 183.62767 * 1 2 3 30 30 H 1.08999 * 109.75993 * 33.22815 * 10 9 7 31 31 H 1.08999 * 109.75903 * 153.94315 * 10 9 7 32 32 H 1.09000 * 109.00844 * 42.26768 * 11 10 9 33 33 H 1.08998 * 109.00467 * 161.05943 * 11 10 9 34 34 H 1.08990 * 109.32644 * 178.56244 * 12 11 10 35 35 H 1.09003 * 109.32503 * 298.21335 * 12 11 10 36 36 H 1.08005 * 126.07617 * 0.02562 * 17 16 14 37 37 H 1.08001 * 125.43063 * 179.74831 * 19 18 17 38 38 H 1.07996 * 120.03544 * 0.02562 * 22 21 20 39 39 H 1.07991 * 119.97126 * 180.24883 * 23 22 21 40 40 H 1.08000 * 119.93599 * 179.72646 * 24 23 22 41 41 H 1.08004 * 119.97088 * 179.97438 * 25 24 23 42 42 H 1.08002 * 120.03542 * 180.02562 * 26 25 24 43 43 H 1.09000 * 108.87113 * 211.44581 * 27 13 12 44 44 H 1.09000 * 108.87427 * 329.98581 * 27 13 12 45 45 H 1.09002 * 109.47919 * 260.62734 * 28 9 7 46 46 H 1.09004 * 109.48032 * 20.65733 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6963 -1.2124 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0107 -1.2479 0.4047 9 7 1.4262 -2.3301 -0.5114 10 6 1.7118 -3.5972 0.0978 11 6 2.9956 -4.1523 -0.5418 12 6 2.7376 -4.7405 -1.8656 13 7 2.1409 -3.7299 -2.7710 14 6 2.9030 -3.1321 -3.7081 15 8 4.0928 -3.3794 -3.7735 16 6 2.2984 -2.1830 -4.6493 17 6 1.0789 -1.5765 -4.5323 18 7 0.9110 -0.7885 -5.5945 19 6 1.9558 -0.8743 -6.3779 20 7 2.8459 -1.7279 -5.8353 21 6 4.0903 -2.0860 -6.3704 22 6 5.2414 -1.9506 -5.6058 23 6 6.4660 -2.3094 -6.1343 24 6 6.5477 -2.7930 -7.4273 25 6 5.4038 -2.9238 -8.1932 26 6 4.1756 -2.5721 -7.6683 27 6 0.7515 -3.3869 -2.6503 28 6 0.5109 -2.2012 -1.6782 29 1 -0.4851 -0.8383 0.0531 30 1 1.8610 -3.4657 1.1694 31 1 0.8846 -4.2851 -0.0774 32 1 3.7180 -3.3429 -0.6478 33 1 3.4152 -4.9176 0.1110 34 1 3.6757 -5.0968 -2.2911 35 1 2.0481 -5.5781 -1.7600 36 1 0.3775 -1.7095 -3.7218 37 1 2.0842 -0.3450 -7.3106 38 1 5.1787 -1.5692 -4.5974 39 1 7.3611 -2.2081 -5.5388 40 1 7.5069 -3.0688 -7.8399 41 1 5.4708 -3.3013 -9.2028 42 1 3.2825 -2.6748 -8.2667 43 1 0.3675 -3.1196 -3.6348 44 1 0.2046 -4.2553 -2.2829 45 1 -0.5228 -2.2143 -1.3325 46 1 0.7098 -1.2619 -2.1942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981333410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:55 Heat of formation + Delta-G solvation = 102.911552 kcal Electronic energy + Delta-G solvation = -30990.193070 eV Core-core repulsion = 27075.461967 eV Total energy + Delta-G solvation = -3914.731103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.68667 -41.04193 -40.04549 -38.72600 -36.29374 -35.29083 -34.63641 -32.91983 -32.07640 -31.02410 -30.28414 -29.49500 -27.12801 -25.61869 -24.91692 -24.23886 -23.99297 -22.69777 -22.02524 -21.53307 -20.47621 -19.39642 -18.94343 -17.92838 -17.54421 -17.32604 -16.97243 -16.58563 -16.37828 -15.94084 -15.81146 -15.58620 -15.39040 -15.00039 -14.96889 -14.83485 -14.57928 -14.42240 -14.11808 -13.87253 -13.76039 -13.40240 -13.07254 -12.77734 -12.63710 -12.38999 -12.32202 -12.11513 -12.06593 -11.97266 -11.83719 -11.68174 -11.32069 -11.23062 -10.95157 -10.41789 -9.99848 -9.96002 -9.64681 -9.59610 -8.84217 -8.20099 -5.47183 -0.21933 0.32633 0.44244 1.31253 1.47386 1.54142 1.70111 1.72761 2.06874 2.18384 2.57237 2.66665 3.15336 3.34628 3.50692 3.59174 3.81223 3.87603 3.89377 3.99166 4.05341 4.10306 4.15986 4.17773 4.31775 4.38045 4.40758 4.44667 4.54947 4.62692 4.67021 4.76144 4.82329 4.92639 4.94572 4.97358 5.09351 5.15504 5.24203 5.34821 5.37405 5.38994 5.46201 5.62245 5.78981 5.91322 6.16762 6.28926 6.44509 6.69011 7.02334 7.16164 7.79370 8.20813 8.98424 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012111 B = 0.004423 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.352590 B = 6328.620682 C = 6863.379709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.053 4.053 3 Si 1.094 2.906 4 H -0.284 1.284 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.359 4.359 8 H 0.027 0.973 9 N -0.603 5.603 10 C 0.159 3.841 11 C -0.153 4.153 12 C 0.133 3.867 13 N -0.570 5.570 14 C 0.586 3.414 15 O -0.571 6.571 16 C -0.098 4.098 17 C 0.017 3.983 18 N -0.517 5.517 19 C 0.223 3.777 20 N -0.386 5.386 21 C 0.079 3.921 22 C -0.087 4.087 23 C -0.120 4.120 24 C -0.100 4.100 25 C -0.107 4.107 26 C -0.108 4.108 27 C 0.071 3.929 28 C 0.134 3.866 29 H 0.260 0.740 30 H 0.033 0.967 31 H 0.061 0.939 32 H 0.023 0.977 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.201 0.799 37 H 0.256 0.744 38 H 0.091 0.909 39 H 0.139 0.861 40 H 0.163 0.837 41 H 0.170 0.830 42 H 0.149 0.851 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.034 0.966 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 -10.284 -17.533 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.253 4.253 3 Si 0.921 3.079 4 H -0.209 1.209 5 H -0.226 1.226 6 H -0.201 1.201 7 C -0.490 4.490 8 H 0.044 0.956 9 N -0.327 5.327 10 C 0.033 3.967 11 C -0.194 4.194 12 C 0.012 3.988 13 N -0.299 5.299 14 C 0.375 3.625 15 O -0.453 6.453 16 C -0.212 4.212 17 C -0.134 4.134 18 N -0.235 5.235 19 C -0.058 4.058 20 N -0.064 5.064 21 C -0.011 4.011 22 C -0.107 4.107 23 C -0.139 4.139 24 C -0.118 4.118 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.054 4.054 28 C 0.009 3.991 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.217 0.783 37 H 0.272 0.728 38 H 0.109 0.891 39 H 0.156 0.844 40 H 0.180 0.820 41 H 0.187 0.813 42 H 0.167 0.833 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.051 0.949 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.662 -8.367 -17.755 21.070 hybrid contribution 0.742 -1.498 1.166 2.038 sum 8.403 -9.865 -16.589 21.051 Atomic orbital electron populations 1.70905 1.07076 1.29652 1.49159 1.26742 0.96614 1.03887 0.98010 0.83110 0.74322 0.73892 0.76585 1.20914 1.22617 1.20119 1.19841 0.97080 0.90587 1.41458 0.95567 1.43744 1.54506 1.03265 1.31149 1.20470 0.94704 0.86743 0.94825 1.21635 1.00247 1.00034 0.97441 1.20762 0.99785 0.89549 0.88663 1.47122 1.10469 1.40128 1.32214 1.16968 0.85571 0.79399 0.80551 1.90733 1.15179 1.64930 1.74473 1.20891 0.98021 1.08850 0.93471 1.23939 0.95466 0.95454 0.98558 1.70246 1.25627 1.22492 1.05111 1.26140 0.84608 0.93619 1.01392 1.42836 1.14477 1.32890 1.16181 1.17974 0.82261 1.05341 0.95508 1.21043 0.92729 0.98684 0.98239 1.21268 0.96454 0.99147 0.96981 1.21695 1.00565 0.96580 0.92925 1.21450 0.90584 0.98826 1.01628 1.21317 1.00780 0.98134 0.92478 1.22558 0.81720 0.99793 1.01356 1.22240 0.93053 0.96370 0.87469 0.92922 0.94906 0.92085 0.95840 0.89222 0.90470 0.87703 0.78264 0.72803 0.89095 0.84363 0.81984 0.81282 0.83343 0.87856 0.87955 0.94855 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.69 12.96 21.65 0.28 -55.41 16 2 C -0.05 -3.06 4.65 84.86 0.40 -2.66 16 3 Si 1.09 54.06 29.99 68.60 2.06 56.11 16 4 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.36 -20.47 9.03 84.03 0.76 -19.71 16 8 H 0.03 1.59 7.95 -2.91 -0.02 1.57 16 9 N -0.60 -29.22 2.27 -697.38 -1.58 -30.81 16 10 C 0.16 6.34 5.63 87.21 0.49 6.83 16 11 C -0.15 -5.41 5.64 29.04 0.16 -5.24 16 12 C 0.13 4.15 5.68 84.23 0.48 4.62 16 13 N -0.57 -20.41 2.46 -835.19 -2.06 -22.47 16 14 C 0.59 23.52 7.61 86.46 0.66 24.18 16 15 O -0.57 -24.72 12.79 -4.33 -0.06 -24.78 16 16 C -0.10 -3.72 6.56 39.97 0.26 -3.46 16 17 C 0.02 0.66 8.98 84.11 0.76 1.41 16 18 N -0.52 -18.23 11.20 -199.34 -2.23 -20.46 16 19 C 0.22 6.35 12.28 180.25 2.21 8.57 16 20 N -0.39 -12.47 2.86 -339.43 -0.97 -13.45 16 21 C 0.08 2.26 5.61 38.11 0.21 2.47 16 22 C -0.09 -2.73 7.65 22.39 0.17 -2.56 16 23 C -0.12 -2.79 10.04 22.25 0.22 -2.57 16 24 C -0.10 -1.62 10.04 22.29 0.22 -1.39 16 25 C -0.11 -1.59 10.04 22.25 0.22 -1.36 16 26 C -0.11 -2.15 9.74 22.39 0.22 -1.93 16 27 C 0.07 2.37 4.72 87.67 0.41 2.78 16 28 C 0.13 5.88 4.44 86.68 0.39 6.27 16 29 H 0.26 15.56 6.56 -92.71 -0.61 14.95 16 30 H 0.03 1.39 8.02 -2.39 -0.02 1.37 16 31 H 0.06 2.07 7.59 -2.39 -0.02 2.05 16 32 H 0.02 1.03 7.91 -2.39 -0.02 1.01 16 33 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.08 2.48 7.16 -2.39 -0.02 2.46 16 35 H 0.10 2.48 8.05 -2.39 -0.02 2.46 16 36 H 0.20 7.67 3.12 -2.91 -0.01 7.66 16 37 H 0.26 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.09 3.56 7.14 -2.91 -0.02 3.54 16 39 H 0.14 2.80 8.06 -2.92 -0.02 2.77 16 40 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 42 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 43 H 0.10 3.25 4.37 -2.39 -0.01 3.24 16 44 H 0.10 2.77 7.72 -2.39 -0.02 2.75 16 45 H 0.03 1.50 7.15 -2.39 -0.02 1.48 16 46 H 0.04 2.00 5.39 -2.38 -0.01 1.98 16 Total: -1.00 -78.08 360.74 4.86 -73.22 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 1.17 Total: 21.79 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 8.25 Total: 16.25 kcal Atomic # 7 Polarization: -136.03 SS G_CDS: -6.56 Total: -142.59 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.06 Total: -24.78 kcal Atomic # 14 Polarization: 54.06 SS G_CDS: 2.06 Total: 56.11 kcal Total: -78.08 4.86 -73.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981333410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.129 kcal (2) G-P(sol) polarization free energy of solvation -78.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds