Wall clock time and date at job start Sat Apr 11 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00135 * 2 1 4 4 H 1.48499 * 109.46935 * 275.28911 * 3 2 1 5 5 H 1.48499 * 109.47345 * 35.28512 * 3 2 1 6 6 H 1.48504 * 109.47215 * 155.28967 * 3 2 1 7 7 C 1.38816 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99723 * 338.47367 * 7 2 1 9 9 N 1.36931 * 119.99646 * 158.48139 * 7 2 1 10 10 C 1.43468 * 118.94198 * 320.77788 * 9 7 2 11 11 C 1.53797 * 107.95498 * 273.63292 * 10 9 7 12 12 C 1.47715 * 111.83900 * 281.59308 * 11 10 9 13 13 N 1.48216 * 110.06255 * 58.37424 * 12 11 10 14 14 C 1.34781 * 119.97212 * 102.59207 * 13 12 11 15 15 O 1.21608 * 119.99494 * 4.78155 * 14 13 12 16 16 C 1.47408 * 119.99996 * 184.78245 * 14 13 12 17 17 C 1.41332 * 126.41047 * 6.87982 * 16 14 13 18 18 N 1.30478 * 108.06450 * 180.02562 * 17 16 14 19 19 N 1.39934 * 108.91835 * 359.97438 * 18 17 16 20 20 C 1.40154 * 125.77427 * 179.97438 * 19 18 17 21 21 C 1.38847 * 120.06971 * 180.02562 * 20 19 18 22 22 C 1.38113 * 119.92838 * 180.02562 * 21 20 19 23 23 C 1.38274 * 120.07160 * 359.97438 * 22 21 20 24 24 C 1.38274 * 120.13762 * 0.02562 * 23 22 21 25 25 C 1.38118 * 120.06529 * 0.02562 * 24 23 22 26 26 C 1.34537 * 108.45373 * 0.24829 * 19 18 17 27 27 C 1.43623 * 120.05962 * 282.31725 * 13 12 11 28 28 C 1.48861 * 118.93847 * 140.76118 * 9 7 2 29 29 H 0.97005 * 120.00080 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.75944 * 33.24715 * 10 9 7 31 31 H 1.09003 * 109.76121 * 153.96854 * 10 9 7 32 32 H 1.08998 * 109.00745 * 42.27996 * 11 10 9 33 33 H 1.09006 * 109.00096 * 161.13525 * 11 10 9 34 34 H 1.08997 * 109.40356 * 298.23076 * 12 11 10 35 35 H 1.08999 * 109.53026 * 178.59400 * 12 11 10 36 36 H 1.07999 * 125.96494 * 0.02562 * 17 16 14 37 37 H 1.07997 * 120.03245 * 0.02562 * 21 20 19 38 38 H 1.08003 * 119.96127 * 180.25267 * 22 21 20 39 39 H 1.08001 * 119.93100 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.97306 * 179.97438 * 24 23 22 41 41 H 1.08005 * 120.03495 * 179.97438 * 25 24 23 42 42 H 1.08006 * 126.31085 * 179.73664 * 26 19 18 43 43 H 1.09004 * 108.87014 * 211.70258 * 27 13 12 44 44 H 1.09001 * 108.87353 * 330.23291 * 27 13 12 45 45 H 1.08998 * 109.48182 * 20.63252 * 28 9 7 46 46 H 1.09006 * 109.48738 * 260.60543 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3859 2.1108 -1.3941 5 1 1.5080 2.6178 0.8087 6 1 3.5992 1.4104 0.5853 7 6 2.0102 -1.2022 -0.0005 8 1 1.5266 -2.1050 0.3423 9 7 3.3079 -1.2434 -0.4355 10 6 3.6844 -0.4537 -1.5727 11 6 3.3903 -1.2756 -2.8389 12 6 4.4301 -2.2953 -3.0859 13 7 4.5325 -3.2090 -1.9233 14 6 3.9814 -4.4376 -1.9819 15 8 3.4768 -4.8289 -3.0169 16 6 3.9903 -5.3069 -0.7915 17 6 4.4126 -4.9456 0.5080 18 7 4.2700 -5.9852 1.2834 19 7 3.7566 -7.0465 0.5296 20 6 3.4681 -8.3302 1.0125 21 6 2.9602 -9.2978 0.1559 22 6 2.6764 -10.5617 0.6349 23 6 2.8980 -10.8641 1.9659 24 6 3.4037 -9.9027 2.8214 25 6 3.6885 -8.6366 2.3486 26 6 3.5925 -6.6279 -0.7384 27 6 5.2235 -2.7885 -0.7365 28 6 4.2828 -2.1057 0.2869 29 1 -0.4850 0.8401 0.0004 30 1 3.1041 0.4689 -1.5890 31 1 4.7478 -0.2195 -1.5230 32 1 2.4260 -1.7706 -2.7249 33 1 3.3448 -0.6033 -3.6958 34 1 5.3898 -1.8032 -3.2435 35 1 4.1723 -2.8706 -3.9751 36 1 4.7879 -3.9780 0.8069 37 1 2.7874 -9.0623 -0.8838 38 1 2.2852 -11.3160 -0.0318 39 1 2.6757 -11.8534 2.3380 40 1 3.5753 -10.1417 3.8605 41 1 4.0831 -7.8859 3.0174 42 1 3.2170 -7.2163 -1.5626 43 1 5.6816 -3.6596 -0.2680 44 1 6.0082 -2.0854 -1.0159 45 1 3.7455 -2.8677 0.8514 46 1 4.8719 -1.4946 0.9707 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981574853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:13 Heat of formation + Delta-G solvation = 146.482145 kcal Electronic energy + Delta-G solvation = -29847.442614 eV Core-core repulsion = 25934.600874 eV Total energy + Delta-G solvation = -3912.841740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.82590 -39.79265 -38.94872 -37.12396 -34.60132 -33.91939 -32.52470 -31.54643 -31.51475 -30.28933 -29.16289 -28.04184 -25.87766 -24.28713 -23.84055 -23.31530 -22.25467 -21.22043 -20.62240 -20.13152 -19.12267 -18.04431 -16.80182 -16.69432 -16.21645 -15.99940 -15.70913 -15.43391 -15.24628 -14.98128 -14.55750 -14.35703 -14.01368 -13.84693 -13.44213 -13.23783 -13.00449 -12.96065 -12.89405 -12.72701 -12.11277 -12.04499 -11.87206 -11.59931 -11.57562 -11.23005 -11.03770 -10.90550 -10.72560 -10.48630 -10.30353 -10.11944 -9.77847 -9.60014 -9.43383 -9.35802 -9.18697 -8.51770 -8.30016 -8.10938 -6.78559 -5.97880 -3.41456 0.54264 0.99599 1.85095 2.15908 2.26686 3.30136 3.36599 3.45528 3.47451 3.49609 3.73291 4.26722 4.49229 4.51429 4.65424 4.67985 4.81522 4.87045 4.96725 5.01619 5.11384 5.24581 5.31400 5.38170 5.42361 5.45372 5.52642 5.63547 5.65914 5.76054 5.86025 5.91953 5.97961 6.00661 6.11896 6.14353 6.31650 6.37598 6.38682 6.41176 6.44327 6.54959 6.73949 6.94424 6.96533 7.20628 7.47543 7.85027 8.10920 8.38799 8.60136 9.03273 9.71958 10.08429 11.17648 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.003110 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.795409 B = 9001.561452 C = 9733.532690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.037 3.963 3 Si 0.883 3.117 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.268 4.268 8 H 0.074 0.926 9 N -0.597 5.597 10 C 0.152 3.848 11 C -0.166 4.166 12 C 0.131 3.869 13 N -0.580 5.580 14 C 0.600 3.400 15 O -0.557 6.557 16 C -0.265 4.265 17 C 0.068 3.932 18 N -0.294 5.294 19 N -0.317 5.317 20 C 0.160 3.840 21 C -0.141 4.141 22 C -0.093 4.093 23 C -0.131 4.131 24 C -0.097 4.097 25 C -0.116 4.116 26 C 0.120 3.880 27 C 0.072 3.928 28 C 0.108 3.892 29 H 0.263 0.737 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.227 0.773 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.189 0.811 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.748 -17.385 1.074 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.164 4.164 3 Si 0.713 3.287 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.321 5.321 10 C 0.025 3.975 11 C -0.207 4.207 12 C 0.010 3.990 13 N -0.310 5.310 14 C 0.389 3.611 15 O -0.437 6.437 16 C -0.279 4.279 17 C -0.119 4.119 18 N -0.111 5.111 19 N -0.089 5.089 20 C 0.068 3.932 21 C -0.161 4.161 22 C -0.112 4.112 23 C -0.150 4.150 24 C -0.115 4.115 25 C -0.136 4.136 26 C -0.027 4.027 27 C -0.054 4.054 28 C -0.018 4.018 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.242 0.758 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.158 0.842 42 H 0.206 0.794 43 H 0.103 0.897 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.480 -17.985 1.747 21.409 hybrid contribution 0.085 1.544 -0.745 1.717 sum 11.565 -16.441 1.002 20.126 Atomic orbital electron populations 1.69874 1.06028 1.26646 1.51490 1.25484 0.95061 0.97762 0.98090 0.86859 0.80461 0.84580 0.76767 1.21437 1.23125 1.19541 1.18748 0.85843 0.94062 1.41073 0.90854 1.43763 1.07143 1.51576 1.29593 1.20679 0.96755 0.93711 0.86343 1.21842 1.00922 0.98345 0.99569 1.20742 0.98961 0.91135 0.88136 1.47058 1.54900 1.13673 1.15393 1.17074 0.77174 0.80782 0.86044 1.90716 1.46848 1.74532 1.31580 1.20340 1.16762 0.94970 0.95814 1.25801 0.96377 0.98869 0.90890 1.77279 1.20083 0.94608 1.19131 1.45693 1.47677 1.08848 1.06726 1.17624 1.00222 0.81158 0.94193 1.20916 1.02167 0.93170 0.99892 1.20977 0.98773 0.95507 0.95918 1.21243 1.00167 0.99844 0.93729 1.21089 0.97955 0.92317 1.00185 1.20964 1.01266 0.97913 0.93481 1.22916 0.96765 0.95172 0.87830 1.22343 0.95433 0.99979 0.87662 1.22505 0.91993 0.94320 0.92976 0.92745 0.93166 0.94476 0.90182 0.92415 0.91962 0.89919 0.75792 0.84989 0.84939 0.85443 0.85032 0.84212 0.79445 0.89745 0.90838 0.91194 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.97 55.49 0.78 -26.79 16 2 C 0.04 1.05 5.30 -17.43 -0.09 0.95 16 3 Si 0.88 21.98 25.05 -169.99 -4.26 17.72 16 4 H -0.29 -6.94 6.70 56.52 0.38 -6.56 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.27 -7.40 9.55 -15.06 -0.14 -7.54 16 8 H 0.07 2.26 8.06 -52.49 -0.42 1.83 16 9 N -0.60 -13.50 2.10 -171.99 -0.36 -13.87 16 10 C 0.15 3.16 4.55 -5.23 -0.02 3.13 16 11 C -0.17 -3.18 5.65 -28.87 -0.16 -3.34 16 12 C 0.13 2.15 5.77 -5.65 -0.03 2.12 16 13 N -0.58 -9.83 2.45 -177.62 -0.43 -10.27 16 14 C 0.60 11.10 7.66 -12.53 -0.10 11.00 16 15 O -0.56 -11.69 16.33 5.27 0.09 -11.61 16 16 C -0.27 -4.37 5.93 -105.05 -0.62 -4.99 16 17 C 0.07 1.04 8.66 -16.95 -0.15 0.89 16 18 N -0.29 -4.55 11.77 30.88 0.36 -4.19 16 19 N -0.32 -4.55 3.77 -10.21 -0.04 -4.59 16 20 C 0.16 1.95 6.68 -83.60 -0.56 1.39 16 21 C -0.14 -1.39 9.45 -39.40 -0.37 -1.76 16 22 C -0.09 -0.73 10.04 -39.61 -0.40 -1.13 16 23 C -0.13 -0.98 10.04 -39.56 -0.40 -1.37 16 24 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 25 C -0.12 -1.28 9.65 -39.40 -0.38 -1.66 16 26 C 0.12 1.75 10.61 -16.43 -0.17 1.58 16 27 C 0.07 1.04 4.69 -4.58 -0.02 1.02 16 28 C 0.11 1.93 5.93 -1.75 -0.01 1.92 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 30 H 0.05 1.17 3.12 -51.93 -0.16 1.01 16 31 H 0.04 0.67 7.59 -51.93 -0.39 0.27 16 32 H 0.08 1.87 7.91 -51.93 -0.41 1.46 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.08 1.39 7.08 -51.93 -0.37 1.02 16 36 H 0.23 3.10 2.99 -52.49 -0.16 2.94 16 37 H 0.13 1.11 6.71 -52.49 -0.35 0.76 16 38 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.14 1.57 7.68 -52.48 -0.40 1.17 16 42 H 0.19 2.26 7.01 -52.48 -0.37 1.89 16 43 H 0.08 1.04 4.68 -51.93 -0.24 0.80 16 44 H 0.07 0.93 7.72 -51.93 -0.40 0.53 16 45 H 0.07 1.30 5.39 -51.93 -0.28 1.02 16 46 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 359.33 15.07 5.41 5.41 Total: -1.00 -34.96 359.33 -8.14 -43.10 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.65 Total: 4.05 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -4.03 Total: 1.02 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.30 Total: -59.70 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.26 Total: 17.72 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.96 -8.14 -43.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981574853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.583 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds