Wall clock time and date at job start Sat Apr 11 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00135 * 2 1 4 4 H 1.48499 * 109.46935 * 275.28911 * 3 2 1 5 5 H 1.48499 * 109.47345 * 35.28512 * 3 2 1 6 6 H 1.48504 * 109.47215 * 155.28967 * 3 2 1 7 7 C 1.38816 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99723 * 338.47367 * 7 2 1 9 9 N 1.36931 * 119.99646 * 158.48139 * 7 2 1 10 10 C 1.43468 * 118.94198 * 320.77788 * 9 7 2 11 11 C 1.53797 * 107.95498 * 273.63292 * 10 9 7 12 12 C 1.47715 * 111.83900 * 281.59308 * 11 10 9 13 13 N 1.48216 * 110.06255 * 58.37424 * 12 11 10 14 14 C 1.34781 * 119.97212 * 102.59207 * 13 12 11 15 15 O 1.21608 * 119.99494 * 4.78155 * 14 13 12 16 16 C 1.47408 * 119.99996 * 184.78245 * 14 13 12 17 17 C 1.41332 * 126.41047 * 6.87982 * 16 14 13 18 18 N 1.30478 * 108.06450 * 180.02562 * 17 16 14 19 19 N 1.39934 * 108.91835 * 359.97438 * 18 17 16 20 20 C 1.40154 * 125.77427 * 179.97438 * 19 18 17 21 21 C 1.38847 * 120.06971 * 180.02562 * 20 19 18 22 22 C 1.38113 * 119.92838 * 180.02562 * 21 20 19 23 23 C 1.38274 * 120.07160 * 359.97438 * 22 21 20 24 24 C 1.38274 * 120.13762 * 0.02562 * 23 22 21 25 25 C 1.38118 * 120.06529 * 0.02562 * 24 23 22 26 26 C 1.34537 * 108.45373 * 0.24829 * 19 18 17 27 27 C 1.43623 * 120.05962 * 282.31725 * 13 12 11 28 28 C 1.48861 * 118.93847 * 140.76118 * 9 7 2 29 29 H 0.97005 * 120.00080 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.75944 * 33.24715 * 10 9 7 31 31 H 1.09003 * 109.76121 * 153.96854 * 10 9 7 32 32 H 1.08998 * 109.00745 * 42.27996 * 11 10 9 33 33 H 1.09006 * 109.00096 * 161.13525 * 11 10 9 34 34 H 1.08997 * 109.40356 * 298.23076 * 12 11 10 35 35 H 1.08999 * 109.53026 * 178.59400 * 12 11 10 36 36 H 1.07999 * 125.96494 * 0.02562 * 17 16 14 37 37 H 1.07997 * 120.03245 * 0.02562 * 21 20 19 38 38 H 1.08003 * 119.96127 * 180.25267 * 22 21 20 39 39 H 1.08001 * 119.93100 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.97306 * 179.97438 * 24 23 22 41 41 H 1.08005 * 120.03495 * 179.97438 * 25 24 23 42 42 H 1.08006 * 126.31085 * 179.73664 * 26 19 18 43 43 H 1.09004 * 108.87014 * 211.70258 * 27 13 12 44 44 H 1.09001 * 108.87353 * 330.23291 * 27 13 12 45 45 H 1.08998 * 109.48182 * 20.63252 * 28 9 7 46 46 H 1.09006 * 109.48738 * 260.60543 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3859 2.1108 -1.3941 5 1 1.5080 2.6178 0.8087 6 1 3.5992 1.4104 0.5853 7 6 2.0102 -1.2022 -0.0005 8 1 1.5266 -2.1050 0.3423 9 7 3.3079 -1.2434 -0.4355 10 6 3.6844 -0.4537 -1.5727 11 6 3.3903 -1.2756 -2.8389 12 6 4.4301 -2.2953 -3.0859 13 7 4.5325 -3.2090 -1.9233 14 6 3.9814 -4.4376 -1.9819 15 8 3.4768 -4.8289 -3.0169 16 6 3.9903 -5.3069 -0.7915 17 6 4.4126 -4.9456 0.5080 18 7 4.2700 -5.9852 1.2834 19 7 3.7566 -7.0465 0.5296 20 6 3.4681 -8.3302 1.0125 21 6 2.9602 -9.2978 0.1559 22 6 2.6764 -10.5617 0.6349 23 6 2.8980 -10.8641 1.9659 24 6 3.4037 -9.9027 2.8214 25 6 3.6885 -8.6366 2.3486 26 6 3.5925 -6.6279 -0.7384 27 6 5.2235 -2.7885 -0.7365 28 6 4.2828 -2.1057 0.2869 29 1 -0.4850 0.8401 0.0004 30 1 3.1041 0.4689 -1.5890 31 1 4.7478 -0.2195 -1.5230 32 1 2.4260 -1.7706 -2.7249 33 1 3.3448 -0.6033 -3.6958 34 1 5.3898 -1.8032 -3.2435 35 1 4.1723 -2.8706 -3.9751 36 1 4.7879 -3.9780 0.8069 37 1 2.7874 -9.0623 -0.8838 38 1 2.2852 -11.3160 -0.0318 39 1 2.6757 -11.8534 2.3380 40 1 3.5753 -10.1417 3.8605 41 1 4.0831 -7.8859 3.0174 42 1 3.2170 -7.2163 -1.5626 43 1 5.6816 -3.6596 -0.2680 44 1 6.0082 -2.0854 -1.0159 45 1 3.7455 -2.8677 0.8514 46 1 4.8719 -1.4946 0.9707 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981574853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:11 Heat of formation + Delta-G solvation = 124.125235 kcal Electronic energy + Delta-G solvation = -29848.412082 eV Core-core repulsion = 25934.600874 eV Total energy + Delta-G solvation = -3913.811208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.95811 -41.02560 -39.84118 -38.69371 -36.16223 -35.10749 -33.81680 -33.55698 -32.31395 -31.37141 -30.13133 -29.60914 -27.40729 -25.60295 -25.40891 -24.22856 -23.42419 -22.30817 -21.83577 -21.66311 -20.30004 -19.16525 -18.66942 -17.90916 -17.46282 -17.22064 -17.00165 -16.80551 -16.54053 -16.06331 -15.76749 -15.38536 -15.36695 -14.91725 -14.85425 -14.62338 -14.52296 -14.39073 -14.06668 -13.85067 -13.74061 -13.43546 -13.19734 -12.71228 -12.67658 -12.50265 -12.49990 -12.30704 -12.08328 -11.93982 -11.84523 -11.59734 -11.45152 -11.36701 -10.86435 -10.59538 -10.32840 -10.05921 -9.59297 -9.17330 -8.66147 -8.17452 -5.57064 -0.36170 0.29824 0.76442 1.10144 1.16255 1.33135 1.43421 1.55383 2.08025 2.39148 2.44010 2.75332 3.08643 3.27628 3.36972 3.55424 3.77679 3.83171 3.88135 4.08750 4.10030 4.12295 4.18531 4.21436 4.33964 4.39230 4.43415 4.49541 4.52369 4.61413 4.62112 4.72353 4.83796 4.96541 4.98959 5.00014 5.05807 5.09230 5.18075 5.31480 5.36589 5.48066 5.48452 5.67767 5.73219 5.98942 6.02678 6.16893 6.33506 6.52613 7.07424 7.22290 7.69862 8.03809 9.03122 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.003110 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.795409 B = 9001.561452 C = 9733.532690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.027 4.027 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.315 1.315 6 H -0.248 1.248 7 C -0.253 4.253 8 H 0.019 0.981 9 N -0.608 5.608 10 C 0.144 3.856 11 C -0.155 4.155 12 C 0.131 3.869 13 N -0.582 5.582 14 C 0.592 3.408 15 O -0.594 6.594 16 C -0.295 4.295 17 C 0.067 3.933 18 N -0.311 5.311 19 N -0.311 5.311 20 C 0.118 3.882 21 C -0.147 4.147 22 C -0.092 4.092 23 C -0.120 4.120 24 C -0.098 4.098 25 C -0.132 4.132 26 C 0.123 3.877 27 C 0.075 3.925 28 C 0.103 3.897 29 H 0.261 0.739 30 H 0.027 0.973 31 H 0.083 0.917 32 H 0.021 0.979 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.238 0.762 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.128 0.872 42 H 0.207 0.793 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.053 0.947 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.796 -18.400 1.198 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.222 4.222 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.244 1.244 6 H -0.171 1.171 7 C -0.383 4.383 8 H 0.037 0.963 9 N -0.332 5.332 10 C 0.018 3.982 11 C -0.196 4.196 12 C 0.010 3.990 13 N -0.311 5.311 14 C 0.382 3.618 15 O -0.477 6.477 16 C -0.309 4.309 17 C -0.119 4.119 18 N -0.129 5.129 19 N -0.083 5.083 20 C 0.027 3.973 21 C -0.167 4.167 22 C -0.110 4.110 23 C -0.138 4.138 24 C -0.116 4.116 25 C -0.152 4.152 26 C -0.026 4.026 27 C -0.050 4.050 28 C -0.022 4.022 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.040 0.960 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.092 0.908 36 H 0.253 0.747 37 H 0.158 0.842 38 H 0.181 0.819 39 H 0.179 0.821 40 H 0.174 0.826 41 H 0.146 0.854 42 H 0.224 0.776 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.071 0.929 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.599 -19.022 1.897 24.053 hybrid contribution -0.947 1.563 -0.731 1.969 sum 13.652 -17.459 1.166 22.193 Atomic orbital electron populations 1.70044 1.08167 1.27378 1.54566 1.26191 0.95646 1.01752 0.98641 0.85636 0.79489 0.79042 0.77147 1.20131 1.24446 1.17102 1.18513 0.88172 0.92088 1.39514 0.96312 1.43852 1.06101 1.52477 1.30764 1.20832 0.98851 0.92553 0.85918 1.21716 0.98913 0.98932 1.00042 1.20812 1.00169 0.90307 0.87695 1.47210 1.54415 1.13183 1.16300 1.17439 0.76677 0.81564 0.86081 1.90676 1.48547 1.75505 1.32970 1.20339 1.19089 0.95723 0.95731 1.25920 0.96381 0.99275 0.90350 1.77212 1.20787 0.95113 1.19801 1.45871 1.46645 1.09388 1.06419 1.18062 1.03012 0.80792 0.95389 1.21188 1.01744 0.93591 1.00174 1.21404 0.97732 0.95113 0.96786 1.21708 0.97923 1.00915 0.93301 1.21424 0.97202 0.91302 1.01683 1.21069 1.02080 0.99036 0.93023 1.23238 0.95840 0.94989 0.88503 1.22443 0.94824 1.01597 0.86147 1.22720 0.91668 0.93748 0.94055 0.93042 0.95505 0.89932 0.95976 0.90199 0.87258 0.90776 0.74696 0.84167 0.81931 0.82061 0.82572 0.85444 0.77607 0.87333 0.87100 0.92860 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.68 13.97 21.65 0.30 -61.38 16 2 C -0.03 -1.57 5.30 84.86 0.45 -1.12 16 3 Si 0.96 45.91 25.05 68.60 1.72 47.63 16 4 H -0.27 -12.46 6.70 99.48 0.67 -11.80 16 5 H -0.32 -15.58 7.11 99.48 0.71 -14.87 16 6 H -0.25 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.25 -14.48 9.55 84.04 0.80 -13.68 16 8 H 0.02 1.27 8.06 -2.91 -0.02 1.24 16 9 N -0.61 -27.09 2.10 -698.05 -1.47 -28.56 16 10 C 0.14 5.66 4.55 87.21 0.40 6.05 16 11 C -0.16 -5.80 5.65 29.21 0.17 -5.63 16 12 C 0.13 4.02 5.77 84.39 0.49 4.50 16 13 N -0.58 -18.95 2.45 -834.12 -2.04 -21.00 16 14 C 0.59 22.21 7.66 86.66 0.66 22.88 16 15 O -0.59 -25.75 16.33 -4.06 -0.07 -25.82 16 16 C -0.29 -9.94 5.93 -20.14 -0.12 -10.06 16 17 C 0.07 2.08 8.66 85.66 0.74 2.82 16 18 N -0.31 -9.89 11.77 -56.23 -0.66 -10.55 16 19 N -0.31 -9.17 3.77 -186.20 -0.70 -9.87 16 20 C 0.12 2.89 6.68 38.10 0.25 3.15 16 21 C -0.15 -2.74 9.45 22.39 0.21 -2.53 16 22 C -0.09 -1.20 10.04 22.25 0.22 -0.97 16 23 C -0.12 -1.40 10.04 22.29 0.22 -1.17 16 24 C -0.10 -1.44 10.04 22.25 0.22 -1.22 16 25 C -0.13 -2.88 9.65 22.39 0.22 -2.67 16 26 C 0.12 3.69 10.61 84.24 0.89 4.58 16 27 C 0.07 1.95 4.69 87.55 0.41 2.36 16 28 C 0.10 3.50 5.93 86.56 0.51 4.01 16 29 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 30 H 0.03 1.19 3.12 -2.39 -0.01 1.19 16 31 H 0.08 2.53 7.59 -2.39 -0.02 2.51 16 32 H 0.02 1.05 7.91 -2.39 -0.02 1.03 16 33 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 34 H 0.11 2.39 8.05 -2.39 -0.02 2.37 16 35 H 0.07 2.43 7.08 -2.39 -0.02 2.41 16 36 H 0.24 6.38 2.99 -2.91 -0.01 6.37 16 37 H 0.14 2.26 6.71 -2.91 -0.02 2.24 16 38 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 40 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.13 2.99 7.68 -2.91 -0.02 2.96 16 42 H 0.21 5.10 7.01 -2.91 -0.02 5.08 16 43 H 0.11 2.39 4.68 -2.38 -0.01 2.38 16 44 H 0.11 2.16 7.72 -2.39 -0.02 2.14 16 45 H 0.05 1.99 5.39 -2.39 -0.01 1.98 16 46 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -82.97 359.33 4.82 -78.15 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.98 Total: 20.09 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 6.76 Total: 11.31 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -4.57 Total: -131.36 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.07 Total: -25.82 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.72 Total: 47.63 kcal Total: -82.97 4.82 -78.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981574853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.277 kcal (2) G-P(sol) polarization free energy of solvation -82.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds