Wall clock time and date at job start Sat Apr 11 2020 06:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99631 * 2 1 4 4 H 1.48498 * 109.47437 * 269.99964 * 3 2 1 5 5 H 1.48502 * 109.47158 * 30.00412 * 3 2 1 6 6 H 1.48500 * 109.46771 * 149.99664 * 3 2 1 7 7 C 1.38811 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99768 * 154.71991 * 7 2 1 9 9 N 1.36930 * 119.99903 * 334.72244 * 7 2 1 10 10 C 1.46905 * 120.69184 * 328.00883 * 9 7 2 11 11 C 1.52669 * 109.34446 * 235.31140 * 10 9 7 12 12 C 1.53192 * 109.42918 * 303.76974 * 11 10 9 13 13 C 1.52629 * 109.35250 * 58.92815 * 12 11 10 14 14 C 1.53458 * 113.68593 * 74.05988 * 13 12 11 15 15 N 1.47676 * 85.96619 * 91.17555 * 14 13 12 16 16 C 1.34778 * 134.45142 * 204.28772 * 15 14 13 17 17 O 1.21599 * 119.99771 * 174.44613 * 16 15 14 18 18 C 1.47522 * 119.99810 * 354.44561 * 16 15 14 19 19 C 1.46499 * 120.17177 * 355.35411 * 18 16 15 20 20 C 1.35533 * 119.05006 * 179.72671 * 19 18 16 21 21 C 1.41231 * 119.42125 * 0.55475 * 20 19 18 22 22 C 1.37909 * 132.96724 * 179.72789 * 21 20 19 23 23 N 1.33457 * 107.66117 * 179.97438 * 22 21 20 24 24 C 1.30740 * 109.93109 * 0.02562 * 23 22 21 25 25 N 1.35923 * 109.21381 * 359.97438 * 24 23 22 26 26 C 1.36328 * 120.16419 * 175.63255 * 18 16 15 27 27 C 1.47667 * 91.09165 * 24.28781 * 15 14 13 28 28 C 1.47121 * 120.68825 * 148.28366 * 9 7 2 29 29 H 0.97001 * 120.00346 * 174.12758 * 1 2 3 30 30 H 1.09003 * 109.53263 * 355.23480 * 10 9 7 31 31 H 1.08996 * 109.53382 * 115.47759 * 10 9 7 32 32 H 1.08996 * 109.56337 * 183.71552 * 11 10 9 33 33 H 1.08999 * 109.34694 * 63.68936 * 11 10 9 34 34 H 1.08997 * 109.48749 * 298.96441 * 12 11 10 35 35 H 1.08998 * 109.48769 * 178.89234 * 12 11 10 36 36 H 1.09002 * 113.79499 * 205.43761 * 14 13 12 37 37 H 1.09000 * 113.78948 * 336.91448 * 14 13 12 38 38 H 1.07999 * 120.47300 * 0.02562 * 19 18 16 39 39 H 1.07997 * 120.28854 * 180.27209 * 20 19 18 40 40 H 1.08004 * 126.17466 * 359.96809 * 22 21 20 41 41 H 1.08005 * 125.39313 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.74473 * 359.97438 * 26 18 16 43 43 H 1.09003 * 113.78944 * 221.44629 * 27 15 14 44 44 H 1.08998 * 113.79509 * 89.97501 * 27 15 14 45 45 H 1.08994 * 109.63884 * 248.30551 * 28 9 7 46 46 H 1.08999 * 109.63900 * 8.92504 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0127 -1.2467 -0.4000 9 7 1.4239 -2.3314 0.5053 10 6 0.4669 -2.2460 1.6166 11 6 0.9352 -3.1457 2.7576 12 6 1.1096 -4.5768 2.2394 13 6 2.1292 -4.5826 1.1036 14 6 3.5787 -4.4057 1.5755 15 7 3.6261 -5.8801 1.6446 16 6 4.3649 -6.7692 2.3376 17 8 4.1128 -7.9566 2.2653 18 6 5.4793 -6.3018 3.1837 19 6 5.8512 -4.8848 3.1949 20 6 6.8750 -4.4794 3.9850 21 6 7.5658 -5.4304 4.7680 22 6 8.6255 -5.3343 5.6454 23 7 8.8760 -6.5588 6.1133 24 6 8.0424 -7.4167 5.5857 25 7 7.2037 -6.7629 4.7392 26 6 6.1720 -7.1873 3.9548 27 6 2.5399 -5.9898 0.6503 28 6 1.7439 -3.6562 -0.0488 29 1 -0.4851 -0.8356 -0.0859 30 1 0.4074 -1.2158 1.9679 31 1 -0.5156 -2.5740 1.2774 32 1 0.1946 -3.1363 3.5573 33 1 1.8878 -2.7786 3.1393 34 1 0.1535 -4.9494 1.8718 35 1 1.4628 -5.2160 3.0485 36 1 4.2383 -3.9794 0.8196 37 1 3.6687 -3.9169 2.5456 38 1 5.3139 -4.1728 2.5861 39 1 7.1631 -3.4389 4.0121 40 1 9.1569 -4.4311 5.9066 41 1 8.0232 -8.4771 5.7902 42 1 5.9016 -8.2328 3.9444 43 1 1.8048 -6.7596 0.8853 44 1 2.8904 -6.0348 -0.3808 45 1 0.8721 -4.0574 -0.5655 46 1 2.5786 -3.5704 -0.7445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981893763.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:39 Heat of formation + Delta-G solvation = 119.502555 kcal Electronic energy + Delta-G solvation = -29582.136080 eV Core-core repulsion = 25668.124418 eV Total energy + Delta-G solvation = -3914.011663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.00265 -40.89621 -38.77057 -37.00658 -36.16295 -33.77872 -32.92440 -31.53236 -30.70601 -29.84454 -28.46596 -26.56869 -26.34791 -25.26449 -23.94232 -23.13565 -22.42849 -22.09587 -20.93041 -19.66798 -18.36547 -18.17714 -17.45285 -17.32495 -16.39365 -16.20503 -16.17073 -15.74590 -15.04267 -14.88179 -14.61677 -14.25030 -14.11030 -13.80416 -13.76097 -13.64657 -13.43061 -13.26936 -12.85777 -12.48051 -12.18772 -12.04124 -11.99599 -11.79407 -11.51457 -11.17236 -11.05316 -10.80583 -10.64199 -10.51932 -10.37362 -10.16855 -10.10534 -9.94118 -9.86328 -9.59016 -9.35425 -8.75045 -8.43085 -7.86451 -6.95292 -6.15671 -3.37206 0.32157 0.73829 2.11275 2.42874 2.77061 2.84952 3.30840 3.43578 3.46944 3.61874 4.04402 4.12393 4.28089 4.35103 4.48800 4.50311 4.57717 4.65430 4.87795 4.98665 5.08882 5.17704 5.20748 5.38207 5.39537 5.46522 5.48264 5.53339 5.59079 5.62092 5.68521 5.79663 5.83143 5.87285 6.05044 6.14264 6.18446 6.26622 6.32922 6.37593 6.48550 6.56766 6.60870 6.77503 6.96367 7.09737 7.52222 7.57764 7.92724 7.95333 8.49462 9.01191 9.73827 10.20293 11.11632 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.003050 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.498430 B = 9177.557073 C =10562.414610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.018 4.018 3 Si 1.063 2.937 4 H -0.294 1.294 5 H -0.286 1.286 6 H -0.291 1.291 7 C -0.355 4.355 8 H 0.054 0.946 9 N -0.594 5.594 10 C 0.151 3.849 11 C -0.136 4.136 12 C -0.084 4.084 13 C -0.101 4.101 14 C 0.113 3.887 15 N -0.630 5.630 16 C 0.589 3.411 17 O -0.549 6.549 18 C -0.144 4.144 19 C -0.113 4.113 20 C -0.078 4.078 21 C 0.007 3.993 22 C -0.020 4.020 23 N -0.452 5.452 24 C 0.149 3.851 25 N -0.377 5.377 26 C 0.123 3.877 27 C 0.117 3.883 28 C 0.163 3.837 29 H 0.270 0.730 30 H 0.075 0.925 31 H 0.017 0.983 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.183 0.817 41 H 0.214 0.786 42 H 0.179 0.821 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.024 0.976 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.480 -11.543 7.300 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.221 4.221 3 Si 0.893 3.107 4 H -0.221 1.221 5 H -0.212 1.212 6 H -0.218 1.218 7 C -0.484 4.484 8 H 0.072 0.928 9 N -0.317 5.317 10 C 0.025 3.975 11 C -0.175 4.175 12 C -0.121 4.121 13 C -0.104 4.104 14 C -0.009 4.009 15 N -0.364 5.364 16 C 0.379 3.621 17 O -0.429 6.429 18 C -0.151 4.151 19 C -0.133 4.133 20 C -0.098 4.098 21 C -0.100 4.100 22 C -0.173 4.173 23 N -0.166 5.166 24 C -0.126 4.126 25 N -0.050 5.050 26 C 0.000 4.000 27 C -0.005 4.005 28 C 0.036 3.964 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.174 0.826 39 H 0.171 0.829 40 H 0.200 0.800 41 H 0.231 0.769 42 H 0.196 0.804 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.041 0.959 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.933 -10.949 8.041 17.438 hybrid contribution -0.350 -1.559 -0.695 1.742 sum 10.584 -12.508 7.346 17.957 Atomic orbital electron populations 1.70749 1.06750 1.30464 1.46904 1.25876 0.96463 1.01596 0.98213 0.83575 0.74753 0.75936 0.76464 1.22124 1.21194 1.21793 1.19861 0.97482 0.88317 1.42702 0.92848 1.44061 1.51516 1.01337 1.34806 1.20807 0.91147 0.98773 0.86752 1.21996 1.01095 0.95223 0.99205 1.21120 0.97572 0.97656 0.95775 1.22612 0.94450 0.94350 0.98955 1.23487 0.96748 0.78679 1.01952 1.49940 1.36598 1.08280 1.41540 1.17285 0.80460 0.84734 0.79647 1.90788 1.70057 1.15734 1.66278 1.20423 0.99229 0.94009 1.01414 1.22767 0.97265 0.93958 0.99349 1.20506 0.95067 0.99023 0.95206 1.19825 1.01514 0.83961 1.04738 1.22602 0.98470 0.96384 0.99849 1.69962 1.22686 1.00841 1.23062 1.25204 0.91626 1.00098 0.95693 1.42984 1.22842 1.09304 1.29835 1.21666 0.86950 1.00711 0.90677 1.23307 0.87075 0.97863 0.92268 1.20803 0.98182 0.86058 0.91399 0.91933 0.90638 0.96518 0.92814 0.92384 0.91911 0.93068 0.88920 0.89448 0.82628 0.82897 0.80022 0.76921 0.80387 0.90025 0.89340 0.95863 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.66 12.56 55.49 0.70 -24.96 16 2 C -0.02 -0.48 4.65 -17.43 -0.08 -0.56 16 3 Si 1.06 23.56 29.99 -169.99 -5.10 18.47 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.35 -8.89 9.45 -15.06 -0.14 -9.03 16 8 H 0.05 1.34 7.95 -52.49 -0.42 0.92 16 9 N -0.59 -13.00 2.80 -172.74 -0.48 -13.48 16 10 C 0.15 3.15 4.70 -3.99 -0.02 3.13 16 11 C -0.14 -2.25 5.99 -26.80 -0.16 -2.41 16 12 C -0.08 -1.22 5.02 -26.82 -0.13 -1.36 16 13 C -0.10 -1.45 0.87 -154.43 -0.13 -1.58 16 14 C 0.11 1.48 5.21 -3.17 -0.02 1.46 16 15 N -0.63 -8.38 3.44 -181.71 -0.63 -9.00 16 16 C 0.59 8.33 7.99 -12.48 -0.10 8.23 16 17 O -0.55 -9.14 17.03 5.28 0.09 -9.05 16 18 C -0.14 -1.75 5.98 -103.47 -0.62 -2.37 16 19 C -0.11 -1.24 9.26 -37.22 -0.34 -1.58 16 20 C -0.08 -0.79 10.09 -39.41 -0.40 -1.18 16 21 C 0.01 0.08 6.78 -84.02 -0.57 -0.49 16 22 C -0.02 -0.22 12.00 -16.97 -0.20 -0.43 16 23 N -0.45 -5.35 11.19 -13.78 -0.15 -5.50 16 24 C 0.15 1.48 12.76 -89.37 -1.14 0.34 16 25 N -0.38 -4.11 2.94 -61.93 -0.18 -4.29 16 26 C 0.12 1.34 10.50 -16.22 -0.17 1.17 16 27 C 0.12 1.50 7.98 -3.18 -0.03 1.47 16 28 C 0.16 2.88 5.71 -3.81 -0.02 2.86 16 29 H 0.27 7.68 7.00 -40.82 -0.29 7.39 16 30 H 0.08 1.81 6.53 -51.93 -0.34 1.47 16 31 H 0.02 0.36 7.96 -51.93 -0.41 -0.05 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.97 7.37 -51.93 -0.38 0.59 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.72 8.02 -51.93 -0.42 0.31 16 36 H 0.09 1.18 7.91 -51.93 -0.41 0.77 16 37 H 0.09 1.13 5.94 -51.93 -0.31 0.82 16 38 H 0.16 1.63 4.12 -52.49 -0.22 1.42 16 39 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.18 1.46 8.06 -52.48 -0.42 1.04 16 41 H 0.21 1.28 8.06 -52.48 -0.42 0.85 16 42 H 0.18 1.65 7.57 -52.49 -0.40 1.25 16 43 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 44 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 1.06 7.78 -51.93 -0.40 0.65 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -31.50 369.12 -10.64 -42.13 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.16 Total: 2.44 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -4.28 Total: -2.32 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.75 Total: -57.24 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.10 Total: 18.47 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.50 -10.64 -42.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981893763.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.636 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds