Wall clock time and date at job start Sat Apr 11 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99631 * 2 1 4 4 H 1.48498 * 109.47437 * 269.99964 * 3 2 1 5 5 H 1.48502 * 109.47158 * 30.00412 * 3 2 1 6 6 H 1.48500 * 109.46771 * 149.99664 * 3 2 1 7 7 C 1.38811 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99768 * 154.71991 * 7 2 1 9 9 N 1.36930 * 119.99903 * 334.72244 * 7 2 1 10 10 C 1.46905 * 120.69184 * 328.00883 * 9 7 2 11 11 C 1.52669 * 109.34446 * 235.31140 * 10 9 7 12 12 C 1.53192 * 109.42918 * 303.76974 * 11 10 9 13 13 C 1.52629 * 109.35250 * 58.92815 * 12 11 10 14 14 C 1.53458 * 113.68593 * 74.05988 * 13 12 11 15 15 N 1.47676 * 85.96619 * 91.17555 * 14 13 12 16 16 C 1.34778 * 134.45142 * 204.28772 * 15 14 13 17 17 O 1.21599 * 119.99771 * 174.44613 * 16 15 14 18 18 C 1.47522 * 119.99810 * 354.44561 * 16 15 14 19 19 C 1.46499 * 120.17177 * 355.35411 * 18 16 15 20 20 C 1.35533 * 119.05006 * 179.72671 * 19 18 16 21 21 C 1.41231 * 119.42125 * 0.55475 * 20 19 18 22 22 C 1.37909 * 132.96724 * 179.72789 * 21 20 19 23 23 N 1.33457 * 107.66117 * 179.97438 * 22 21 20 24 24 C 1.30740 * 109.93109 * 0.02562 * 23 22 21 25 25 N 1.35923 * 109.21381 * 359.97438 * 24 23 22 26 26 C 1.36328 * 120.16419 * 175.63255 * 18 16 15 27 27 C 1.47667 * 91.09165 * 24.28781 * 15 14 13 28 28 C 1.47121 * 120.68825 * 148.28366 * 9 7 2 29 29 H 0.97001 * 120.00346 * 174.12758 * 1 2 3 30 30 H 1.09003 * 109.53263 * 355.23480 * 10 9 7 31 31 H 1.08996 * 109.53382 * 115.47759 * 10 9 7 32 32 H 1.08996 * 109.56337 * 183.71552 * 11 10 9 33 33 H 1.08999 * 109.34694 * 63.68936 * 11 10 9 34 34 H 1.08997 * 109.48749 * 298.96441 * 12 11 10 35 35 H 1.08998 * 109.48769 * 178.89234 * 12 11 10 36 36 H 1.09002 * 113.79499 * 205.43761 * 14 13 12 37 37 H 1.09000 * 113.78948 * 336.91448 * 14 13 12 38 38 H 1.07999 * 120.47300 * 0.02562 * 19 18 16 39 39 H 1.07997 * 120.28854 * 180.27209 * 20 19 18 40 40 H 1.08004 * 126.17466 * 359.96809 * 22 21 20 41 41 H 1.08005 * 125.39313 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.74473 * 359.97438 * 26 18 16 43 43 H 1.09003 * 113.78944 * 221.44629 * 27 15 14 44 44 H 1.08998 * 113.79509 * 89.97501 * 27 15 14 45 45 H 1.08994 * 109.63884 * 248.30551 * 28 9 7 46 46 H 1.08999 * 109.63900 * 8.92504 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0127 -1.2467 -0.4000 9 7 1.4239 -2.3314 0.5053 10 6 0.4669 -2.2460 1.6166 11 6 0.9352 -3.1457 2.7576 12 6 1.1096 -4.5768 2.2394 13 6 2.1292 -4.5826 1.1036 14 6 3.5787 -4.4057 1.5755 15 7 3.6261 -5.8801 1.6446 16 6 4.3649 -6.7692 2.3376 17 8 4.1128 -7.9566 2.2653 18 6 5.4793 -6.3018 3.1837 19 6 5.8512 -4.8848 3.1949 20 6 6.8750 -4.4794 3.9850 21 6 7.5658 -5.4304 4.7680 22 6 8.6255 -5.3343 5.6454 23 7 8.8760 -6.5588 6.1133 24 6 8.0424 -7.4167 5.5857 25 7 7.2037 -6.7629 4.7392 26 6 6.1720 -7.1873 3.9548 27 6 2.5399 -5.9898 0.6503 28 6 1.7439 -3.6562 -0.0488 29 1 -0.4851 -0.8356 -0.0859 30 1 0.4074 -1.2158 1.9679 31 1 -0.5156 -2.5740 1.2774 32 1 0.1946 -3.1363 3.5573 33 1 1.8878 -2.7786 3.1393 34 1 0.1535 -4.9494 1.8718 35 1 1.4628 -5.2160 3.0485 36 1 4.2383 -3.9794 0.8196 37 1 3.6687 -3.9169 2.5456 38 1 5.3139 -4.1728 2.5861 39 1 7.1631 -3.4389 4.0121 40 1 9.1569 -4.4311 5.9066 41 1 8.0232 -8.4771 5.7902 42 1 5.9016 -8.2328 3.9444 43 1 1.8048 -6.7596 0.8853 44 1 2.8904 -6.0348 -0.3808 45 1 0.8721 -4.0574 -0.5655 46 1 2.5786 -3.5704 -0.7445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981893763.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:38 Heat of formation + Delta-G solvation = 103.684822 kcal Electronic energy + Delta-G solvation = -29582.821989 eV Core-core repulsion = 25668.124418 eV Total energy + Delta-G solvation = -3914.697571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.78962 -42.02091 -39.90982 -37.91938 -37.64473 -34.71880 -34.40544 -32.53877 -32.23752 -31.15568 -29.25823 -27.67033 -27.49185 -27.03217 -24.88949 -23.99656 -23.93399 -22.88574 -22.38581 -20.76198 -19.45948 -19.24684 -19.11549 -18.27916 -17.39987 -17.16722 -17.07697 -16.75669 -16.26926 -15.96076 -15.76351 -15.61984 -15.42501 -15.29459 -14.96479 -14.74272 -14.53335 -14.36177 -13.97019 -13.81439 -13.43642 -13.28104 -12.96212 -12.92704 -12.79921 -12.66722 -12.42694 -11.95312 -11.87372 -11.83129 -11.76961 -11.65094 -11.43245 -11.29645 -11.09141 -11.01206 -10.45633 -10.36711 -9.80948 -8.82002 -8.64161 -8.14655 -5.35477 -0.52114 -0.04717 1.27751 1.51579 1.64686 1.71100 1.79993 1.87626 2.03237 2.42379 2.70364 3.10153 3.22510 3.32859 3.36128 3.59604 3.65310 3.69495 3.76734 3.79644 3.86965 3.93279 4.15356 4.20826 4.28045 4.41518 4.47654 4.48128 4.51520 4.59666 4.66466 4.72547 4.75726 4.86258 4.89231 4.91555 5.02574 5.06428 5.10482 5.21300 5.25902 5.35560 5.37923 5.50483 5.51778 5.96700 6.01251 6.47634 6.51561 6.74252 6.88790 7.14039 7.84489 8.32144 9.08175 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.003050 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.498430 B = 9177.557073 C =10562.414610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.073 4.073 3 Si 1.109 2.891 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.346 4.346 8 H 0.055 0.945 9 N -0.609 5.609 10 C 0.158 3.842 11 C -0.124 4.124 12 C -0.077 4.077 13 C -0.097 4.097 14 C 0.120 3.880 15 N -0.628 5.628 16 C 0.589 3.411 17 O -0.579 6.579 18 C -0.160 4.160 19 C -0.124 4.124 20 C -0.072 4.072 21 C -0.013 4.013 22 C -0.025 4.025 23 N -0.482 5.482 24 C 0.156 3.844 25 N -0.385 5.385 26 C 0.131 3.869 27 C 0.122 3.878 28 C 0.163 3.837 29 H 0.254 0.746 30 H 0.039 0.961 31 H 0.001 0.999 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.159 0.841 39 H 0.177 0.823 40 H 0.203 0.797 41 H 0.248 0.752 42 H 0.192 0.808 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.018 0.982 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.376 -12.471 8.159 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.270 4.270 3 Si 0.934 3.066 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.476 4.476 8 H 0.073 0.927 9 N -0.333 5.333 10 C 0.032 3.968 11 C -0.163 4.163 12 C -0.114 4.114 13 C -0.100 4.100 14 C -0.001 4.001 15 N -0.360 5.360 16 C 0.380 3.620 17 O -0.461 6.461 18 C -0.166 4.166 19 C -0.144 4.144 20 C -0.092 4.092 21 C -0.120 4.120 22 C -0.176 4.176 23 N -0.195 5.195 24 C -0.119 4.119 25 N -0.057 5.057 26 C 0.008 3.992 27 C 0.000 4.000 28 C 0.038 3.962 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.019 0.981 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.176 0.824 39 H 0.195 0.805 40 H 0.220 0.780 41 H 0.264 0.736 42 H 0.209 0.791 43 H 0.104 0.896 44 H 0.121 0.879 45 H 0.036 0.964 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.853 -11.891 8.899 19.641 hybrid contribution -0.891 -1.358 -0.945 1.879 sum 11.962 -13.248 7.954 19.542 Atomic orbital electron populations 1.70872 1.07844 1.29451 1.50410 1.27060 0.96481 1.04829 0.98593 0.82954 0.74395 0.72495 0.76731 1.21465 1.22350 1.19492 1.20129 0.97331 0.89323 1.40841 0.92705 1.44255 1.51395 1.02167 1.35484 1.20648 0.90590 0.97649 0.87939 1.21831 1.01331 0.95380 0.97720 1.21054 0.97881 0.96314 0.96156 1.22417 0.95213 0.94687 0.97658 1.23458 0.95637 0.78662 1.02366 1.49882 1.36488 1.08264 1.41403 1.17520 0.80644 0.84294 0.79491 1.90768 1.71064 1.16881 1.67398 1.20321 0.99300 0.94893 1.02129 1.22751 0.98006 0.93453 1.00170 1.20778 0.94234 1.00019 0.94127 1.20112 1.02081 0.84410 1.05425 1.23046 0.98337 0.96924 0.99329 1.69997 1.23774 1.01587 1.24149 1.25970 0.90373 1.01319 0.94278 1.43118 1.23012 1.09494 1.30089 1.21820 0.86380 1.01132 0.89849 1.23320 0.87107 0.96580 0.93028 1.20875 0.97966 0.84674 0.92727 0.93641 0.94278 0.98120 0.91261 0.92281 0.91745 0.91717 0.88305 0.88946 0.82396 0.80538 0.78024 0.73629 0.79120 0.89565 0.87908 0.96404 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.86 12.56 21.65 0.27 -54.59 16 2 C -0.07 -3.85 4.65 84.86 0.39 -3.46 16 3 Si 1.11 47.68 29.99 68.60 2.06 49.74 16 4 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.35 -17.35 9.45 84.03 0.79 -16.56 16 8 H 0.06 2.70 7.95 -2.91 -0.02 2.68 16 9 N -0.61 -26.69 2.80 -700.44 -1.96 -28.65 16 10 C 0.16 6.68 4.70 86.19 0.41 7.09 16 11 C -0.12 -3.95 5.99 30.55 0.18 -3.76 16 12 C -0.08 -2.09 5.02 30.54 0.15 -1.94 16 13 C -0.10 -2.62 0.87 -52.04 -0.05 -2.66 16 14 C 0.12 2.88 5.21 86.30 0.45 3.33 16 15 N -0.63 -15.39 3.44 -847.05 -2.92 -18.31 16 16 C 0.59 15.66 7.99 86.69 0.69 16.35 16 17 O -0.58 -18.46 17.03 -4.03 -0.07 -18.53 16 18 C -0.16 -3.59 5.98 -19.12 -0.11 -3.71 16 19 C -0.12 -2.46 9.26 23.80 0.22 -2.24 16 20 C -0.07 -1.29 10.09 22.38 0.23 -1.06 16 21 C -0.01 -0.26 6.78 38.81 0.26 0.00 16 22 C -0.02 -0.49 12.00 84.37 1.01 0.53 16 23 N -0.48 -10.46 11.19 -197.50 -2.21 -12.67 16 24 C 0.16 2.74 12.76 179.91 2.30 5.04 16 25 N -0.38 -7.58 2.94 -349.86 -1.03 -8.61 16 26 C 0.13 2.61 10.50 83.54 0.88 3.49 16 27 C 0.12 2.86 7.98 86.30 0.69 3.54 16 28 C 0.16 5.65 5.71 86.19 0.49 6.15 16 29 H 0.25 15.06 7.00 -92.71 -0.65 14.42 16 30 H 0.04 1.93 6.53 -2.39 -0.02 1.91 16 31 H 0.00 0.04 7.96 -2.39 -0.02 0.02 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 1.88 7.37 -2.39 -0.02 1.86 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.65 8.02 -2.39 -0.02 1.63 16 36 H 0.10 2.29 7.91 -2.39 -0.02 2.27 16 37 H 0.09 2.17 5.94 -2.39 -0.01 2.15 16 38 H 0.16 2.98 4.12 -2.91 -0.01 2.97 16 39 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.20 2.82 8.06 -2.91 -0.02 2.79 16 41 H 0.25 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.19 3.17 7.57 -2.91 -0.02 3.15 16 43 H 0.09 1.99 8.09 -2.39 -0.02 1.97 16 44 H 0.10 2.14 8.09 -2.39 -0.02 2.13 16 45 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.06 2.12 7.78 -2.39 -0.02 2.10 16 Total: -1.00 -68.63 369.12 4.26 -64.37 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.12 Total: 17.11 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 8.99 Total: 10.12 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -7.84 Total: -122.82 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.07 Total: -18.53 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.06 Total: 49.74 kcal Total: -68.63 4.26 -64.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981893763.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.058 kcal (2) G-P(sol) polarization free energy of solvation -68.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds