Wall clock time and date at job start Sat Apr 11 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99976 * 2 1 4 4 H 1.48504 * 109.47105 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47679 * 240.00462 * 3 2 1 6 6 H 1.48500 * 109.47081 * 120.00311 * 3 2 1 7 7 C 1.38807 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99924 * 213.96837 * 7 2 1 9 9 N 1.36934 * 120.00420 * 33.96500 * 7 2 1 10 10 C 1.43460 * 118.94487 * 204.21484 * 9 7 2 11 11 C 1.53795 * 107.96370 * 273.61272 * 10 9 7 12 12 C 1.47142 * 111.84019 * 281.66554 * 11 10 9 13 13 N 1.48210 * 110.34212 * 58.29451 * 12 11 10 14 14 C 1.34770 * 119.97026 * 102.47091 * 13 12 11 15 15 O 1.21553 * 120.00132 * 352.31510 * 14 13 12 16 16 C 1.47863 * 120.00330 * 172.31686 * 14 13 12 17 17 C 1.39618 * 120.10918 * 23.45488 * 16 14 13 18 18 C 1.37977 * 119.98762 * 179.97438 * 17 16 14 19 19 C 1.38262 * 120.21721 * 359.97438 * 18 17 16 20 20 C 1.38921 * 120.22863 * 0.02562 * 19 18 17 21 21 N 1.40211 * 119.99720 * 179.97438 * 20 19 18 22 22 C 1.35219 * 126.05126 * 4.99426 * 21 20 19 23 23 C 1.35321 * 107.71055 * 180.02562 * 22 21 20 24 24 C 1.39921 * 107.93254 * 0.02562 * 23 22 21 25 25 N 1.30879 * 108.23983 * 359.71621 * 24 23 22 26 26 C 1.38597 * 120.00469 * 359.74331 * 20 19 18 27 27 C 1.43621 * 120.06215 * 282.49060 * 13 12 11 28 28 C 1.48859 * 118.93869 * 23.94843 * 9 7 2 29 29 H 0.97006 * 119.99819 * 185.91118 * 1 2 3 30 30 H 1.09002 * 109.75888 * 33.22670 * 10 9 7 31 31 H 1.08997 * 109.76405 * 153.94247 * 10 9 7 32 32 H 1.09004 * 109.00246 * 42.26789 * 11 10 9 33 33 H 1.08993 * 109.01098 * 161.05081 * 11 10 9 34 34 H 1.09002 * 109.32490 * 178.56114 * 12 11 10 35 35 H 1.09001 * 109.32148 * 298.20420 * 12 11 10 36 36 H 1.08002 * 120.00548 * 0.02562 * 17 16 14 37 37 H 1.07999 * 119.89232 * 179.97438 * 18 17 16 38 38 H 1.07997 * 119.88629 * 179.97438 * 19 18 17 39 39 H 1.07995 * 126.14400 * 0.02728 * 22 21 20 40 40 H 1.08000 * 126.03443 * 180.02562 * 23 22 21 41 41 H 1.08000 * 125.88061 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.10925 * 180.25859 * 26 20 19 43 43 H 1.09003 * 108.87519 * 211.44723 * 27 13 12 44 44 H 1.09006 * 108.87394 * 329.98821 * 27 13 12 45 45 H 1.08995 * 109.48092 * 260.62784 * 28 9 7 46 46 H 1.09003 * 109.47957 * 20.66055 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6966 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 2.9521 -1.2821 0.5221 9 7 1.5009 -2.2866 -0.6635 10 6 1.9005 -3.6019 -0.2531 11 6 3.2047 -3.9526 -0.9889 12 6 2.9554 -4.3602 -2.3806 13 7 2.2573 -3.2798 -3.1167 14 6 2.9441 -2.4922 -3.9678 15 8 4.1554 -2.5739 -4.0282 16 6 2.2243 -1.5287 -4.8280 17 6 0.9596 -1.0679 -4.4574 18 6 0.2904 -0.1684 -5.2617 19 6 0.8683 0.2797 -6.4351 20 6 2.1263 -0.1729 -6.8125 21 7 2.7076 0.2844 -8.0037 22 6 2.1995 1.2308 -8.8249 23 6 3.0582 1.3818 -9.8599 24 6 4.1260 0.4987 -9.6661 25 7 3.9197 -0.1551 -8.5512 26 6 2.8089 -1.0727 -6.0092 27 6 0.8495 -3.0710 -2.9236 28 6 0.5457 -2.0630 -1.7831 29 1 -0.4850 -0.8356 0.0865 30 1 2.0694 -3.6165 0.8237 31 1 1.1243 -4.3211 -0.5141 32 1 3.8592 -3.0809 -0.9861 33 1 3.7004 -4.7686 -0.4633 34 1 3.9059 -4.5740 -2.8696 35 1 2.3360 -5.2570 -2.3883 36 1 0.5055 -1.4147 -3.5409 37 1 -0.6881 0.1868 -4.9738 38 1 0.3396 0.9835 -7.0608 39 1 1.2747 1.7695 -8.6808 40 1 2.9400 2.0635 -10.6892 41 1 4.9768 0.3807 -10.3209 42 1 3.7888 -1.4225 -6.2989 43 1 0.4183 -2.6947 -3.8513 44 1 0.3818 -4.0248 -2.6793 45 1 -0.4736 -2.2095 -1.4260 46 1 0.6569 -1.0455 -2.1581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982214963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:55 Heat of formation + Delta-G solvation = 157.712942 kcal Electronic energy + Delta-G solvation = -30289.954366 eV Core-core repulsion = 26377.599630 eV Total energy + Delta-G solvation = -3912.354736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.64727 -40.56029 -38.41802 -37.19123 -34.65475 -34.10653 -32.69289 -31.34480 -31.06055 -30.20570 -28.94118 -27.96353 -25.59708 -24.05475 -23.84312 -23.45224 -22.05272 -21.05030 -20.62609 -19.86717 -19.25538 -18.12397 -17.37168 -16.76308 -16.26707 -16.08598 -15.45594 -15.19231 -14.98303 -14.50996 -14.47347 -14.11656 -13.79891 -13.69142 -13.60920 -13.38094 -13.05534 -13.00606 -12.85118 -12.62822 -12.43460 -12.15056 -11.69617 -11.53239 -11.18320 -10.90726 -10.80341 -10.67312 -10.43023 -10.37957 -10.24146 -10.22354 -10.02417 -9.54896 -9.48503 -9.27277 -9.03446 -8.31360 -8.22451 -8.09318 -6.99606 -6.19203 -3.24197 0.67552 1.04472 2.03562 2.23691 2.61969 3.06733 3.32039 3.47728 3.54922 3.70051 3.85400 4.34175 4.53745 4.54877 4.67157 4.82741 4.90584 4.96677 5.13762 5.21507 5.29615 5.35950 5.39745 5.44250 5.49890 5.54580 5.58364 5.73315 5.78681 5.81478 5.86398 5.88108 6.05855 6.11261 6.27173 6.30157 6.35567 6.38829 6.47499 6.52209 6.57488 6.69409 6.73048 6.87896 7.05692 7.11524 7.48591 7.76895 8.01927 8.48403 8.50360 9.05571 9.77195 10.15712 11.08499 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.003897 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.919061 B = 7183.500213 C = 8241.545725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.012 4.012 3 Si 1.040 2.960 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.359 4.359 8 H 0.056 0.944 9 N -0.588 5.588 10 C 0.164 3.836 11 C -0.170 4.170 12 C 0.132 3.868 13 N -0.576 5.576 14 C 0.564 3.436 15 O -0.541 6.541 16 C -0.101 4.101 17 C -0.135 4.135 18 C -0.099 4.099 19 C -0.120 4.120 20 C 0.138 3.862 21 N -0.316 5.316 22 C 0.053 3.947 23 C -0.267 4.267 24 C 0.049 3.951 25 N -0.287 5.287 26 C -0.064 4.064 27 C 0.052 3.948 28 C 0.122 3.878 29 H 0.267 0.733 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.191 0.809 37 H 0.142 0.858 38 H 0.131 0.869 39 H 0.177 0.823 40 H 0.153 0.847 41 H 0.188 0.812 42 H 0.146 0.854 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.040 0.960 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.751 -2.509 -15.944 16.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.215 4.215 3 Si 0.870 3.130 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.488 4.488 8 H 0.074 0.926 9 N -0.311 5.311 10 C 0.036 3.964 11 C -0.211 4.211 12 C 0.011 3.989 13 N -0.306 5.306 14 C 0.352 3.648 15 O -0.420 6.420 16 C -0.105 4.105 17 C -0.153 4.153 18 C -0.117 4.117 19 C -0.141 4.141 20 C 0.047 3.953 21 N -0.092 5.092 22 C -0.091 4.091 23 C -0.296 4.296 24 C -0.137 4.137 25 N -0.106 5.106 26 C -0.084 4.084 27 C -0.073 4.073 28 C -0.004 4.004 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.207 0.793 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.195 0.805 40 H 0.170 0.830 41 H 0.205 0.795 42 H 0.163 0.837 43 H 0.116 0.884 44 H 0.087 0.913 45 H 0.058 0.942 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.869 -1.840 -15.157 15.293 hybrid contribution -0.019 -0.781 -0.450 0.901 sum -0.888 -2.621 -15.606 15.850 Atomic orbital electron populations 1.70850 1.06770 1.29875 1.46551 1.25559 0.96024 1.01067 0.98876 0.83889 0.75516 0.76960 0.76640 1.21041 1.22022 1.21845 1.19860 1.03794 0.91421 1.33738 0.92621 1.43612 1.52682 1.01670 1.33095 1.20303 0.92572 0.86882 0.96677 1.21836 1.02195 1.01552 0.95522 1.20605 0.97406 0.87878 0.93032 1.47154 1.09185 1.32903 1.41406 1.18078 0.86756 0.80136 0.79794 1.90732 1.13385 1.68320 1.69542 1.19817 0.95349 0.99702 0.95612 1.23505 0.93917 0.95466 1.02406 1.21048 1.00789 0.96597 0.93299 1.20964 0.93199 1.01379 0.98580 1.17343 0.93386 0.99189 0.85404 1.45880 1.16578 1.29531 1.17172 1.22639 1.00751 0.93786 0.91877 1.21570 0.97428 1.07629 1.02928 1.24070 0.99683 0.95071 0.94913 1.77535 0.98315 1.23107 1.11641 1.20850 1.00095 0.95064 0.92411 1.22924 0.81797 1.01542 1.01044 1.22423 0.93376 0.97724 0.86871 0.92240 0.93297 0.94973 0.90945 0.92441 0.90312 0.91850 0.79309 0.84059 0.85096 0.80546 0.82975 0.79488 0.83659 0.88396 0.91336 0.94199 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.09 12.66 55.49 0.70 -24.39 16 2 C -0.01 -0.33 4.38 -17.43 -0.08 -0.40 16 3 Si 1.04 25.21 30.03 -169.99 -5.10 20.10 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.36 -9.67 9.05 -15.06 -0.14 -9.80 16 8 H 0.06 1.57 8.02 -52.48 -0.42 1.15 16 9 N -0.59 -13.55 2.41 -171.78 -0.41 -13.97 16 10 C 0.16 3.22 5.63 -5.24 -0.03 3.19 16 11 C -0.17 -3.07 5.64 -29.13 -0.16 -3.24 16 12 C 0.13 2.18 5.65 -5.91 -0.03 2.15 16 13 N -0.58 -10.37 2.46 -177.83 -0.44 -10.80 16 14 C 0.56 11.28 7.52 -12.32 -0.09 11.18 16 15 O -0.54 -12.37 16.08 5.32 0.09 -12.29 16 16 C -0.10 -1.80 5.69 -104.99 -0.60 -2.40 16 17 C -0.14 -2.15 7.18 -39.16 -0.28 -2.43 16 18 C -0.10 -1.29 10.02 -39.67 -0.40 -1.69 16 19 C -0.12 -1.49 9.45 -39.32 -0.37 -1.86 16 20 C 0.14 2.06 6.67 -83.64 -0.56 1.50 16 21 N -0.32 -4.46 3.80 -10.73 -0.04 -4.50 16 22 C 0.05 0.56 10.79 -17.10 -0.18 0.38 16 23 C -0.27 -2.59 10.81 -39.99 -0.43 -3.02 16 24 C 0.05 0.55 12.03 -17.33 -0.21 0.34 16 25 N -0.29 -4.26 11.87 30.64 0.36 -3.90 16 26 C -0.06 -1.09 9.20 -38.99 -0.36 -1.45 16 27 C 0.05 0.84 4.70 -4.39 -0.02 0.82 16 28 C 0.12 2.47 4.42 -1.56 -0.01 2.47 16 29 H 0.27 7.41 7.01 -40.82 -0.29 7.12 16 30 H 0.05 1.00 8.02 -51.93 -0.42 0.59 16 31 H 0.03 0.56 7.59 -51.93 -0.39 0.17 16 32 H 0.07 1.60 7.91 -51.93 -0.41 1.18 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.34 7.22 -51.93 -0.38 0.96 16 35 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 36 H 0.19 3.12 1.66 -52.85 -0.09 3.03 16 37 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.13 1.16 6.75 -52.49 -0.35 0.81 16 39 H 0.18 1.25 7.06 -52.49 -0.37 0.88 16 40 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.19 1.40 8.06 -52.49 -0.42 0.97 16 42 H 0.15 2.68 7.47 -52.48 -0.39 2.29 16 43 H 0.10 1.40 4.31 -51.94 -0.22 1.18 16 44 H 0.07 0.97 7.72 -51.93 -0.40 0.57 16 45 H 0.04 0.82 7.39 -51.93 -0.38 0.43 16 46 H 0.08 1.87 4.91 -51.93 -0.26 1.62 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -33.77 362.85 -9.00 -42.77 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.68 Total: 5.76 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -3.95 Total: -4.25 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.17 Total: -57.57 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.10 Total: 20.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.77 -9.00 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982214963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.480 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds